Wall clock time and date at job start Mon Mar 30 2020 02:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 179.97438 * 3 2 1 5 5 H 1.09002 * 110.27574 * 307.09062 * 4 3 2 6 6 C 1.54948 * 110.31116 * 184.99837 * 4 3 2 7 7 C 1.55304 * 100.94261 * 204.63814 * 6 4 3 8 8 C 1.54381 * 102.25245 * 34.13548 * 7 6 4 9 9 C 1.53002 * 109.82904 * 219.13187 * 8 7 6 10 10 C 1.50691 * 109.83453 * 98.15533 * 8 7 6 11 11 H 1.07997 * 120.00210 * 0.02562 * 10 8 7 12 12 C 1.37880 * 120.00427 * 179.97438 * 10 8 7 13 13 N 1.31516 * 119.99454 * 359.97438 * 12 10 8 14 14 Si 1.86795 * 120.00484 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.46846 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.47188 * 119.99780 * 14 12 10 17 17 H 1.48498 * 109.47136 * 240.00267 * 14 12 10 18 18 O 1.43238 * 107.58695 * 338.63774 * 8 7 6 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 22 22 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 23 23 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 24 24 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 25 25 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 26 26 H 1.08999 * 111.12374 * 322.56223 * 6 4 3 27 27 H 1.09000 * 111.12226 * 86.71687 * 6 4 3 28 28 H 1.09006 * 110.84492 * 152.32145 * 7 6 4 29 29 H 1.08993 * 110.84703 * 275.74067 * 7 6 4 30 30 H 1.09002 * 109.47345 * 59.99161 * 9 8 7 31 31 H 1.08997 * 109.47407 * 179.97438 * 9 8 7 32 32 H 1.09003 * 109.46587 * 299.99573 * 9 8 7 33 33 H 0.97005 * 119.99560 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9474 0.8260 0.8165 6 6 4.1078 2.8902 0.1273 7 6 5.5102 2.7416 -0.5232 8 6 5.2519 1.6879 -1.6215 9 6 6.4398 0.7276 -1.7090 10 6 5.0468 2.3721 -2.9484 11 1 5.0940 3.4491 -3.0136 12 6 4.7997 1.6233 -4.0794 13 7 4.7437 0.3117 -4.0003 14 14 4.5447 2.4714 -5.7241 15 1 4.6570 3.9414 -5.5455 16 1 5.5785 2.0096 -6.6848 17 1 3.1964 2.1377 -6.2493 18 8 4.0692 0.9659 -1.2591 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 1.8934 -0.5137 0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 1.6767 1.9564 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 3.4872 3.5901 -0.4323 27 1 4.1891 3.1890 1.1723 28 1 5.8370 3.6853 -0.9601 29 1 6.2381 2.3795 0.2027 30 1 6.5717 0.2245 -0.7511 31 1 6.2513 -0.0138 -2.4855 32 1 7.3426 1.2878 -1.9525 33 1 4.5695 -0.2152 -4.7959 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307453751.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:40 Heat of formation + Delta-G solvation = -86.200504 kcal Electronic energy + Delta-G solvation = -13442.862119 eV Core-core repulsion = 11274.056127 eV Total energy + Delta-G solvation = -2168.805992 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.16288 -36.06817 -34.49848 -32.63533 -31.71464 -28.53967 -27.24875 -24.74582 -22.19279 -21.83687 -20.92370 -18.75155 -17.03481 -16.62720 -15.73157 -15.50419 -14.99153 -14.61577 -14.19206 -13.64565 -13.57811 -13.22301 -13.12785 -12.82782 -12.76537 -12.41077 -12.19434 -12.12867 -12.04281 -11.79823 -11.46731 -11.28247 -11.00467 -10.87556 -10.54626 -9.65491 -7.99334 -6.22090 1.39118 1.41229 1.51740 2.44141 3.13760 3.62133 3.93134 4.03622 4.24423 4.31709 4.36776 4.55523 4.60227 4.81815 4.87355 4.93560 4.95154 5.02363 5.07424 5.10122 5.15097 5.27328 5.35608 5.38082 5.44506 5.56485 5.62604 5.72411 6.13790 6.39240 6.72024 7.22531 7.53927 9.01155 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.030184 B = 0.012982 C = 0.010817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.429716 B = 2156.308780 C = 2587.859665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 C -0.106 4.106 4 C 0.062 3.938 5 H 0.053 0.947 6 C -0.136 4.136 7 C -0.140 4.140 8 C 0.211 3.789 9 C -0.136 4.136 10 C -0.545 4.545 11 H 0.052 0.948 12 C 0.031 3.969 13 N -0.891 5.891 14 Si 0.947 3.053 15 H -0.267 1.267 16 H -0.278 1.278 17 H -0.284 1.284 18 O -0.384 6.384 19 H 0.059 0.941 20 H 0.044 0.956 21 H 0.070 0.930 22 H 0.065 0.935 23 H 0.033 0.967 24 H 0.044 0.956 25 H 0.091 0.909 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.026 0.974 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.043 2.438 8.272 9.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.157 4.157 3 C -0.143 4.143 4 C 0.004 3.996 5 H 0.071 0.929 6 C -0.173 4.173 7 C -0.178 4.178 8 C 0.173 3.827 9 C -0.193 4.193 10 C -0.583 4.583 11 H 0.070 0.930 12 C -0.171 4.171 13 N -0.528 5.528 14 Si 0.772 3.228 15 H -0.191 1.191 16 H -0.204 1.204 17 H -0.210 1.210 18 O -0.304 6.304 19 H 0.078 0.922 20 H 0.063 0.937 21 H 0.089 0.911 22 H 0.084 0.916 23 H 0.051 0.949 24 H 0.062 0.938 25 H 0.109 0.891 26 H 0.081 0.919 27 H 0.114 0.886 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.150 2.118 8.046 9.298 hybrid contribution 0.146 0.310 -1.128 1.179 sum -4.004 2.428 6.918 8.354 Atomic orbital electron populations 1.21727 0.94488 1.01939 1.01915 1.21412 0.96685 0.96589 1.00984 1.21662 0.93554 0.97391 1.01738 1.23031 0.94759 0.93746 0.88065 0.92901 1.23131 0.95975 0.96977 1.01218 1.23119 0.97295 0.99787 0.97599 1.19738 0.82984 0.87899 0.92052 1.21912 0.97430 1.00565 0.99438 1.21634 1.50544 0.92612 0.93534 0.92977 1.25728 0.94058 0.95313 1.01998 1.70122 1.48104 1.05570 1.29049 0.85705 0.77537 0.79136 0.80373 1.19102 1.20423 1.21040 1.88677 1.44427 1.61499 1.35816 0.92180 0.93710 0.91115 0.91594 0.94851 0.93754 0.89063 0.91904 0.88640 0.91671 0.91429 0.95533 0.92284 0.94111 0.93477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.91 71.98 0.71 -3.05 16 2 C -0.12 -3.93 5.87 30.60 0.18 -3.75 16 3 C -0.11 -3.65 4.94 30.60 0.15 -3.50 16 4 C 0.06 2.48 3.40 31.26 0.11 2.58 16 5 H 0.05 1.98 8.14 -2.39 -0.02 1.97 16 6 C -0.14 -4.89 6.57 32.05 0.21 -4.68 16 7 C -0.14 -5.79 6.07 31.85 0.19 -5.59 16 8 C 0.21 10.80 0.82 -11.07 -0.01 10.79 16 9 C -0.14 -6.86 8.53 71.98 0.61 -6.25 16 10 C -0.55 -30.75 8.23 25.60 0.21 -30.54 16 11 H 0.05 2.89 7.48 -2.91 -0.02 2.87 16 12 C 0.03 1.75 5.26 84.66 0.45 2.20 16 13 N -0.89 -53.25 10.92 21.45 0.23 -53.01 16 14 Si 0.95 44.66 29.54 68.60 2.03 46.68 16 15 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 16 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 18 O -0.38 -20.11 9.64 -148.98 -1.44 -21.55 16 19 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 20 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 21 H 0.07 1.52 8.14 -2.38 -0.02 1.51 16 22 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.03 1.35 7.99 -2.39 -0.02 1.33 16 24 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.06 2.35 8.06 -2.39 -0.02 2.33 16 27 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 28 H 0.06 2.66 7.61 -2.38 -0.02 2.64 16 29 H 0.07 2.50 7.86 -2.39 -0.02 2.48 16 30 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 3.35 6.01 -2.39 -0.01 3.34 16 32 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 Total: -1.00 -63.73 265.75 4.68 -59.05 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 1.04 Total: 10.61 kcal Atomic # 6 Polarization: -44.59 SS G_CDS: 2.82 Total: -41.78 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.23 Total: -53.01 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -1.44 Total: -21.55 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -63.73 4.68 -59.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307453751.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.151 kcal (2) G-P(sol) polarization free energy of solvation -63.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds