Wall clock time and date at job start Mon Mar 30 2020 02:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47191 * 2 1 4 4 C 1.52994 * 109.47090 * 179.97438 * 3 2 1 5 5 H 1.09002 * 110.67916 * 56.51435 * 4 3 2 6 6 C 1.54996 * 110.61535 * 179.47663 * 4 3 2 7 7 C 1.55152 * 102.14551 * 155.47555 * 6 4 3 8 8 C 1.54103 * 104.02712 * 339.21365 * 7 6 4 9 9 C 1.52999 * 109.88145 * 238.36817 * 8 7 6 10 10 C 1.50694 * 109.88042 * 117.36244 * 8 7 6 11 11 H 1.08002 * 120.00179 * 0.30610 * 10 8 7 12 12 C 1.37879 * 120.00472 * 180.30928 * 10 8 7 13 13 N 1.31514 * 119.99350 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 120.00608 * 179.97438 * 12 10 8 15 15 H 1.48490 * 109.47339 * 179.97438 * 14 12 10 16 16 H 1.48493 * 109.47239 * 300.00306 * 14 12 10 17 17 H 1.48504 * 109.46636 * 59.99865 * 14 12 10 18 18 O 1.43745 * 107.41881 * 357.86373 * 8 7 6 19 19 H 1.09000 * 109.46808 * 60.00589 * 1 2 3 20 20 H 1.09005 * 109.46765 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47469 * 299.99849 * 1 2 3 22 22 H 1.09002 * 109.47588 * 239.99714 * 2 1 3 23 23 H 1.09006 * 109.46932 * 119.99856 * 2 1 3 24 24 H 1.08996 * 109.46791 * 59.99736 * 3 2 1 25 25 H 1.09000 * 109.46921 * 300.00209 * 3 2 1 26 26 H 1.08998 * 110.90753 * 273.71610 * 6 4 3 27 27 H 1.08995 * 110.90896 * 37.29530 * 6 4 3 28 28 H 1.08999 * 110.59574 * 220.58135 * 7 6 4 29 29 H 1.08996 * 110.54049 * 97.82410 * 7 6 4 30 30 H 1.08998 * 109.46670 * 299.69058 * 9 8 7 31 31 H 1.08996 * 109.47020 * 59.69099 * 9 8 7 32 32 H 1.08999 * 109.47131 * 179.69049 * 9 8 7 33 33 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9552 0.8797 -0.8496 6 6 4.1157 2.8931 -0.0126 7 6 5.5220 2.7186 0.6192 8 6 5.4234 1.3866 1.3879 9 6 5.7335 1.6161 2.8685 10 6 6.3934 0.3885 0.8102 11 1 7.0258 0.6680 -0.0195 12 6 6.4735 -0.8816 1.3406 13 7 5.7037 -1.2219 2.3512 14 14 7.6753 -2.1191 0.6240 15 1 7.5681 -3.4006 1.3665 16 1 7.3553 -2.3479 -0.8079 17 1 9.0586 -1.5923 0.7440 18 8 4.0779 0.9028 1.2398 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 1.6766 1.9563 0.8899 25 1 1.6766 1.9563 -0.8900 26 1 4.1913 3.2710 -1.0322 27 1 3.4943 3.5481 0.5980 28 1 5.7393 3.5387 1.3035 29 1 6.2848 2.6556 -0.1568 30 1 6.7442 2.0113 2.9709 31 1 5.0208 2.3292 3.2827 32 1 5.6566 0.6713 3.4065 33 1 5.7598 -2.1156 2.7241 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307453753.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:44 Heat of formation + Delta-G solvation = -69.352648 kcal Electronic energy + Delta-G solvation = -13442.431320 eV Core-core repulsion = 11274.355906 eV Total energy + Delta-G solvation = -2168.075414 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.34975 -34.52534 -32.54091 -30.80545 -29.97262 -26.98662 -25.15944 -23.15186 -20.78597 -19.98274 -19.24355 -16.39593 -15.51032 -14.61064 -14.22842 -13.96974 -13.34856 -12.98852 -12.43258 -12.10872 -11.98245 -11.55436 -11.31114 -11.06453 -10.85717 -10.75026 -10.55629 -10.47357 -10.29709 -10.04072 -9.93006 -9.60937 -9.24119 -9.05786 -8.41610 -7.80247 -5.87878 -4.04938 3.33955 3.38876 3.41134 4.46501 5.10473 5.30913 5.44629 5.54031 5.65496 5.74787 5.90001 5.99027 6.07632 6.23149 6.29467 6.35239 6.41185 6.57584 6.65788 6.75131 6.80880 6.87861 6.96107 7.02314 7.08784 7.19463 7.55174 7.84784 8.12699 8.43149 8.71563 9.06401 9.66552 11.13237 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.030986 B = 0.012899 C = 0.010661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.428949 B = 2170.262062 C = 2625.840661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.107 4.107 4 C 0.080 3.920 5 H 0.055 0.945 6 C -0.151 4.151 7 C -0.143 4.143 8 C 0.224 3.776 9 C -0.130 4.130 10 C -0.542 4.542 11 H 0.054 0.946 12 C 0.081 3.919 13 N -0.861 5.861 14 Si 0.885 3.115 15 H -0.287 1.287 16 H -0.277 1.277 17 H -0.277 1.277 18 O -0.350 6.350 19 H 0.046 0.954 20 H 0.048 0.952 21 H 0.050 0.950 22 H 0.055 0.945 23 H 0.075 0.925 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.036 0.964 31 H 0.013 0.987 32 H 0.089 0.911 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.483 4.351 -3.564 7.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.144 4.144 4 C 0.021 3.979 5 H 0.073 0.927 6 C -0.189 4.189 7 C -0.181 4.181 8 C 0.186 3.814 9 C -0.187 4.187 10 C -0.580 4.580 11 H 0.072 0.928 12 C -0.123 4.123 13 N -0.497 5.497 14 Si 0.713 3.287 15 H -0.213 1.213 16 H -0.203 1.203 17 H -0.203 1.203 18 O -0.270 6.270 19 H 0.065 0.935 20 H 0.067 0.933 21 H 0.069 0.931 22 H 0.074 0.926 23 H 0.094 0.906 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.032 0.968 32 H 0.108 0.892 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.639 4.062 -3.270 7.680 hybrid contribution 0.849 -0.565 -0.623 1.195 sum -4.790 3.497 -3.893 7.094 Atomic orbital electron populations 1.21786 0.96986 1.00887 1.00963 1.21444 0.94221 0.97257 1.02979 1.21584 0.95031 0.96878 1.00920 1.22746 0.92349 0.91652 0.91145 0.92739 1.23167 0.97738 0.98264 0.99691 1.23129 0.95720 0.99608 0.99601 1.19589 0.81337 0.88196 0.92245 1.21777 0.97116 1.01803 0.98022 1.21425 1.21435 0.97532 1.17583 0.92815 1.24976 0.94852 0.98070 0.94448 1.69951 1.37330 1.19283 1.23148 0.86802 0.81751 0.80814 0.79382 1.21256 1.20305 1.20311 1.89008 1.29765 1.72092 1.36112 0.93511 0.93306 0.93105 0.92606 0.90587 0.92105 0.92408 0.92453 0.92208 0.93035 0.91991 0.94496 0.96807 0.89224 0.93144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.16 0.37 -1.70 16 2 C -0.12 -2.11 5.85 -26.73 -0.16 -2.26 16 3 C -0.11 -1.87 4.99 -26.73 -0.13 -2.00 16 4 C 0.08 1.70 3.27 -25.68 -0.08 1.62 16 5 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 6 C -0.15 -2.88 6.60 -24.54 -0.16 -3.04 16 7 C -0.14 -3.09 6.29 -25.02 -0.16 -3.25 16 8 C 0.22 5.75 0.74 -91.20 -0.07 5.68 16 9 C -0.13 -3.25 8.44 37.16 0.31 -2.94 16 10 C -0.54 -15.13 8.18 -34.44 -0.28 -15.41 16 11 H 0.05 1.48 7.33 -52.49 -0.38 1.10 16 12 C 0.08 2.29 5.26 -17.82 -0.09 2.20 16 13 N -0.86 -25.02 10.93 55.43 0.61 -24.41 16 14 Si 0.88 21.49 29.54 -169.99 -5.02 16.47 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 O -0.35 -9.10 9.74 -35.23 -0.34 -9.44 16 19 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 20 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.08 1.54 7.92 -51.93 -0.41 1.13 16 24 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 1.06 8.06 -51.93 -0.42 0.65 16 28 H 0.05 1.03 7.70 -51.93 -0.40 0.63 16 29 H 0.06 1.33 7.39 -51.93 -0.38 0.95 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 2.48 6.03 -51.93 -0.31 2.16 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 265.23 15.07 4.00 4.00 Total: -1.00 -29.28 265.23 -6.89 -36.17 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -5.67 Total: -1.66 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -0.45 Total: -21.12 kcal Atomic # 7 Polarization: -25.02 SS G_CDS: 0.61 Total: -24.41 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -0.34 Total: -9.44 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.28 -6.89 -36.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307453753.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.183 kcal (2) G-P(sol) polarization free energy of solvation -29.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds