Wall clock time and date at job start Mon Mar 30 2020 02:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47191 * 2 1 4 4 C 1.52994 * 109.47090 * 179.97438 * 3 2 1 5 5 H 1.09002 * 110.67916 * 56.51435 * 4 3 2 6 6 C 1.54996 * 110.61535 * 179.47663 * 4 3 2 7 7 C 1.55152 * 102.14551 * 155.47555 * 6 4 3 8 8 C 1.54103 * 104.02712 * 339.21365 * 7 6 4 9 9 C 1.52999 * 109.88145 * 238.36817 * 8 7 6 10 10 C 1.50694 * 109.88042 * 117.36244 * 8 7 6 11 11 H 1.08002 * 120.00179 * 0.30610 * 10 8 7 12 12 C 1.37879 * 120.00472 * 180.30928 * 10 8 7 13 13 N 1.31514 * 119.99350 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 120.00608 * 179.97438 * 12 10 8 15 15 H 1.48490 * 109.47339 * 179.97438 * 14 12 10 16 16 H 1.48493 * 109.47239 * 300.00306 * 14 12 10 17 17 H 1.48504 * 109.46636 * 59.99865 * 14 12 10 18 18 O 1.43745 * 107.41881 * 357.86373 * 8 7 6 19 19 H 1.09000 * 109.46808 * 60.00589 * 1 2 3 20 20 H 1.09005 * 109.46765 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47469 * 299.99849 * 1 2 3 22 22 H 1.09002 * 109.47588 * 239.99714 * 2 1 3 23 23 H 1.09006 * 109.46932 * 119.99856 * 2 1 3 24 24 H 1.08996 * 109.46791 * 59.99736 * 3 2 1 25 25 H 1.09000 * 109.46921 * 300.00209 * 3 2 1 26 26 H 1.08998 * 110.90753 * 273.71610 * 6 4 3 27 27 H 1.08995 * 110.90896 * 37.29530 * 6 4 3 28 28 H 1.08999 * 110.59574 * 220.58135 * 7 6 4 29 29 H 1.08996 * 110.54049 * 97.82410 * 7 6 4 30 30 H 1.08998 * 109.46670 * 299.69058 * 9 8 7 31 31 H 1.08996 * 109.47020 * 59.69099 * 9 8 7 32 32 H 1.08999 * 109.47131 * 179.69049 * 9 8 7 33 33 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9552 0.8797 -0.8496 6 6 4.1157 2.8931 -0.0126 7 6 5.5220 2.7186 0.6192 8 6 5.4234 1.3866 1.3879 9 6 5.7335 1.6161 2.8685 10 6 6.3934 0.3885 0.8102 11 1 7.0258 0.6680 -0.0195 12 6 6.4735 -0.8816 1.3406 13 7 5.7037 -1.2219 2.3512 14 14 7.6753 -2.1191 0.6240 15 1 7.5681 -3.4006 1.3665 16 1 7.3553 -2.3479 -0.8079 17 1 9.0586 -1.5923 0.7440 18 8 4.0779 0.9028 1.2398 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 1.6766 1.9563 0.8899 25 1 1.6766 1.9563 -0.8900 26 1 4.1913 3.2710 -1.0322 27 1 3.4943 3.5481 0.5980 28 1 5.7393 3.5387 1.3035 29 1 6.2848 2.6556 -0.1568 30 1 6.7442 2.0113 2.9709 31 1 5.0208 2.3292 3.2827 32 1 5.6566 0.6713 3.4065 33 1 5.7598 -2.1156 2.7241 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307453753.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:43 Heat of formation + Delta-G solvation = -86.211595 kcal Electronic energy + Delta-G solvation = -13443.162379 eV Core-core repulsion = 11274.355906 eV Total energy + Delta-G solvation = -2168.806473 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.12653 -36.06201 -34.47581 -32.60898 -31.72022 -28.53311 -27.27712 -24.74635 -22.29702 -21.55785 -21.12014 -18.44418 -17.16153 -16.61139 -15.80314 -15.55163 -15.13540 -14.50633 -14.23339 -13.69243 -13.47120 -13.22957 -12.92828 -12.85622 -12.76851 -12.51148 -12.32165 -12.16003 -11.90694 -11.80232 -11.47199 -11.19687 -10.97766 -10.92659 -10.54862 -9.75662 -7.99743 -6.23901 1.39595 1.40348 1.47818 2.42857 3.16178 3.61934 3.90381 4.08126 4.23971 4.37046 4.39969 4.50512 4.67428 4.79087 4.88915 4.94281 4.97895 5.01385 5.08409 5.10017 5.16014 5.27087 5.32497 5.42107 5.48090 5.57028 5.61632 5.74032 6.10081 6.34653 6.73007 7.06806 7.52019 8.99602 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.030986 B = 0.012899 C = 0.010661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.428949 B = 2170.262062 C = 2625.840661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.121 4.121 3 C -0.099 4.099 4 C 0.068 3.932 5 H 0.032 0.968 6 C -0.138 4.138 7 C -0.141 4.141 8 C 0.207 3.793 9 C -0.124 4.124 10 C -0.559 4.559 11 H 0.049 0.951 12 C 0.033 3.967 13 N -0.889 5.889 14 Si 0.945 3.055 15 H -0.284 1.284 16 H -0.275 1.275 17 H -0.269 1.269 18 O -0.381 6.381 19 H 0.069 0.931 20 H 0.055 0.945 21 H 0.055 0.945 22 H 0.050 0.950 23 H 0.034 0.966 24 H 0.062 0.938 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.029 0.971 32 H 0.058 0.942 33 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.183 5.439 -4.719 9.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C -0.136 4.136 4 C 0.009 3.991 5 H 0.050 0.950 6 C -0.176 4.176 7 C -0.179 4.179 8 C 0.169 3.831 9 C -0.182 4.182 10 C -0.597 4.597 11 H 0.067 0.933 12 C -0.169 4.169 13 N -0.526 5.526 14 Si 0.770 3.230 15 H -0.210 1.210 16 H -0.201 1.201 17 H -0.194 1.194 18 O -0.301 6.301 19 H 0.088 0.912 20 H 0.074 0.926 21 H 0.074 0.926 22 H 0.068 0.932 23 H 0.053 0.947 24 H 0.081 0.919 25 H 0.111 0.889 26 H 0.104 0.896 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.336 5.161 -4.435 9.298 hybrid contribution 1.064 -0.895 -0.274 1.417 sum -5.273 4.266 -4.708 8.256 Atomic orbital electron populations 1.21715 0.93887 1.01882 1.02314 1.21405 0.96942 0.96902 1.00672 1.21573 0.92267 0.97156 1.02609 1.23004 0.94726 0.92625 0.88705 0.94973 1.23125 0.95949 0.96979 1.01517 1.23046 0.97415 0.97919 0.99533 1.19726 0.81043 0.89696 0.92632 1.21683 0.97953 1.00579 0.97981 1.21799 1.21961 0.98542 1.17416 0.93313 1.25706 0.96485 0.99908 0.94840 1.70104 1.38787 1.19441 1.24289 0.85849 0.79962 0.78598 0.78561 1.20962 1.20053 1.19411 1.88958 1.29743 1.73238 1.38209 0.91214 0.92616 0.92611 0.93152 0.94737 0.91890 0.88934 0.89624 0.90356 0.91430 0.92382 0.93857 0.95213 0.92299 0.93415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 9.91 71.98 0.71 -2.87 16 2 C -0.12 -4.14 5.85 30.59 0.18 -3.96 16 3 C -0.10 -3.27 4.99 30.59 0.15 -3.12 16 4 C 0.07 2.81 3.27 31.28 0.10 2.92 16 5 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 6 C -0.14 -4.90 6.60 32.01 0.21 -4.69 16 7 C -0.14 -5.89 6.29 31.71 0.20 -5.69 16 8 C 0.21 10.63 0.74 -11.17 -0.01 10.62 16 9 C -0.12 -6.27 8.44 71.98 0.61 -5.66 16 10 C -0.56 -31.57 8.18 25.60 0.21 -31.36 16 11 H 0.05 2.71 7.33 -2.91 -0.02 2.69 16 12 C 0.03 1.86 5.26 84.66 0.45 2.30 16 13 N -0.89 -53.00 10.93 21.45 0.23 -52.76 16 14 Si 0.94 44.61 29.54 68.60 2.03 46.63 16 15 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 16 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 17 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 18 O -0.38 -20.01 9.74 -148.98 -1.45 -21.46 16 19 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 20 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 21 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.03 1.43 7.92 -2.38 -0.02 1.41 16 24 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 27 H 0.08 2.50 8.06 -2.39 -0.02 2.48 16 28 H 0.07 2.55 7.70 -2.39 -0.02 2.54 16 29 H 0.06 2.42 7.39 -2.39 -0.02 2.40 16 30 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 3.33 6.03 -2.39 -0.01 3.31 16 33 H 0.26 14.66 8.31 -92.70 -0.77 13.89 16 Total: -1.00 -63.53 265.23 4.67 -58.87 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 1.05 Total: 10.23 kcal Atomic # 6 Polarization: -44.32 SS G_CDS: 2.81 Total: -41.51 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: 0.23 Total: -52.76 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -1.45 Total: -21.46 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -63.53 4.67 -58.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307453753.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.345 kcal (2) G-P(sol) polarization free energy of solvation -63.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds