Wall clock time and date at job start Mon Mar 30 2020 02:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.46786 * 2 1 4 4 C 1.52998 * 109.47315 * 240.00140 * 2 1 3 5 5 C 1.53004 * 109.47032 * 180.02562 * 4 2 1 6 6 C 1.52992 * 109.47438 * 59.99870 * 5 4 2 7 7 C 1.53010 * 109.47083 * 299.99759 * 6 5 4 8 8 C 1.53001 * 109.46891 * 60.00204 * 7 6 5 9 9 H 1.09001 * 109.47272 * 59.99537 * 8 7 6 10 10 C 1.52997 * 109.47278 * 180.02562 * 8 7 6 11 11 H 1.08999 * 109.47179 * 66.19733 * 10 8 7 12 12 O 1.42895 * 109.47252 * 186.19913 * 10 8 7 13 13 C 1.50700 * 109.47095 * 306.20130 * 10 8 7 14 14 H 1.08006 * 119.99914 * 0.02562 * 13 10 8 15 15 C 1.37869 * 120.00374 * 179.97438 * 13 10 8 16 16 N 1.31516 * 120.00578 * 180.02562 * 15 13 10 17 17 Si 1.86798 * 119.99887 * 359.97438 * 15 13 10 18 18 H 1.48504 * 109.47274 * 90.00250 * 17 15 13 19 19 H 1.48504 * 109.47488 * 210.00411 * 17 15 13 20 20 H 1.48503 * 109.47382 * 329.99924 * 17 15 13 21 21 H 1.09003 * 109.47252 * 189.03410 * 1 2 3 22 22 H 1.09004 * 109.47636 * 309.03237 * 1 2 3 23 23 H 1.09003 * 109.47252 * 69.03193 * 1 2 3 24 24 H 1.08995 * 109.47428 * 59.99549 * 4 2 1 25 25 H 1.09003 * 109.46589 * 299.99816 * 4 2 1 26 26 H 1.08995 * 109.46837 * 299.99173 * 5 4 2 27 27 H 1.09002 * 109.46573 * 179.97438 * 5 4 2 28 28 H 1.09003 * 109.47439 * 59.99616 * 6 5 4 29 29 H 1.08998 * 109.47480 * 180.02562 * 6 5 4 30 30 H 1.08994 * 109.47318 * 179.97438 * 7 6 5 31 31 H 1.08995 * 109.46912 * 300.00526 * 7 6 5 32 32 H 0.96701 * 114.00134 * 60.00192 * 12 10 8 33 33 H 0.97001 * 120.00369 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7217 -1.2488 6 6 4.0795 -1.4433 0.0003 7 6 3.5695 -0.7220 1.2497 8 6 2.0395 -0.7215 1.2493 9 1 1.6758 -1.7491 1.2491 10 6 1.5294 0.0003 2.4982 11 1 1.7996 1.0549 2.4442 12 8 0.1078 -0.1240 2.5729 13 6 2.1527 -0.6158 3.7242 14 1 2.8439 -1.4395 3.6227 15 6 1.8414 -0.1273 4.9753 16 7 2.3857 -0.6645 6.0452 17 14 0.6477 1.2987 5.1508 18 1 -0.7348 0.7734 5.2848 19 1 0.9957 2.0901 6.3582 20 1 0.7331 2.1666 3.9488 21 1 -0.3634 -1.0149 0.1614 22 1 -0.3634 0.6472 0.7983 23 1 -0.3634 0.3678 -0.9596 24 1 1.6766 -0.2075 -2.1392 25 1 1.6766 -1.7489 -1.2492 26 1 3.9336 0.3058 -1.2487 27 1 3.9333 -1.2359 -2.1386 28 1 3.7158 -2.4709 0.0002 29 1 5.1695 -1.4433 0.0008 30 1 3.9321 -1.2363 2.1396 31 1 3.9331 0.3055 1.2498 32 1 -0.2051 -1.0376 2.6237 33 1 2.1670 -0.3206 6.9255 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307471739.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:27 Heat of formation + Delta-G solvation = -103.383880 kcal Electronic energy + Delta-G solvation = -13579.966571 eV Core-core repulsion = 11410.415451 eV Total energy + Delta-G solvation = -2169.551119 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.25983 -37.17399 -34.49031 -33.15859 -32.26667 -28.84943 -26.85345 -24.53072 -22.26854 -21.70100 -20.65710 -19.14003 -16.89917 -16.56822 -15.99330 -15.54540 -15.15740 -14.73915 -14.57043 -14.44768 -13.88577 -13.36053 -13.02909 -12.93742 -12.55839 -12.43321 -12.15507 -12.00877 -11.74842 -11.62584 -11.38809 -11.17871 -11.10120 -10.83907 -10.56354 -9.83905 -8.31888 -6.43613 1.40216 1.42753 1.57383 2.39453 3.02382 3.84847 3.88296 4.00001 4.16856 4.35357 4.43314 4.63610 4.64619 4.73329 4.82030 4.84748 5.01377 5.06546 5.14278 5.20536 5.29575 5.38310 5.43084 5.48142 5.48583 5.55919 5.71196 5.78521 5.83537 6.17591 6.69418 7.20362 7.37539 8.82016 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044944 B = 0.012493 C = 0.010441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.846685 B = 2240.697921 C = 2680.988547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.083 4.083 3 H 0.053 0.947 4 C -0.108 4.108 5 C -0.115 4.115 6 C -0.115 4.115 7 C -0.105 4.105 8 C -0.086 4.086 9 H 0.056 0.944 10 C 0.201 3.799 11 H 0.042 0.958 12 O -0.581 6.581 13 C -0.550 4.550 14 H 0.046 0.954 15 C 0.025 3.975 16 N -0.942 5.942 17 Si 0.972 3.028 18 H -0.276 1.276 19 H -0.308 1.308 20 H -0.264 1.264 21 H 0.049 0.951 22 H 0.060 0.940 23 H 0.053 0.947 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.370 0.630 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.321 0.617 -14.387 14.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.145 4.145 5 C -0.152 4.152 6 C -0.152 4.152 7 C -0.143 4.143 8 C -0.105 4.105 9 H 0.074 0.926 10 C 0.144 3.856 11 H 0.060 0.940 12 O -0.389 6.389 13 C -0.587 4.587 14 H 0.064 0.936 15 C -0.174 4.174 16 N -0.582 5.582 17 Si 0.800 3.200 18 H -0.201 1.201 19 H -0.236 1.236 20 H -0.189 1.189 21 H 0.068 0.932 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.091 0.909 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.218 0.782 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.272 1.266 -14.258 14.370 hybrid contribution -0.222 -0.141 0.992 1.026 sum -1.493 1.125 -13.266 13.397 Atomic orbital electron populations 1.21906 0.94658 1.02068 1.01117 1.21124 0.96261 0.98493 0.94242 0.92880 1.21580 0.95531 1.00504 0.96904 1.21526 0.95679 1.00581 0.97406 1.21539 1.00153 0.99130 0.94384 1.21428 0.95293 0.99902 0.97653 1.21555 0.95523 0.98785 0.94644 0.92560 1.19741 0.78354 0.95481 0.92023 0.94008 1.86320 1.24221 1.32408 1.95920 1.21999 1.26994 1.18102 0.91646 0.93554 1.25820 0.96925 0.98963 0.95657 1.70082 1.45430 1.43813 0.98867 0.85323 0.79285 0.79384 0.75973 1.20129 1.23621 1.18889 0.93184 0.92067 0.92801 0.90887 0.92126 0.92265 0.90479 0.92399 0.91703 0.93894 0.93456 0.78177 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 7.96 71.98 0.57 -3.57 16 2 C -0.08 -2.56 2.25 -10.79 -0.02 -2.58 16 3 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 4 C -0.11 -2.66 5.19 30.59 0.16 -2.50 16 5 C -0.11 -2.72 5.92 30.59 0.18 -2.54 16 6 C -0.11 -3.25 5.92 30.60 0.18 -3.07 16 7 C -0.11 -3.88 4.86 30.60 0.15 -3.73 16 8 C -0.09 -3.24 1.62 -10.79 -0.02 -3.25 16 9 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 10 C 0.20 9.21 1.80 29.85 0.05 9.27 16 11 H 0.04 2.05 7.20 -2.39 -0.02 2.03 16 12 O -0.58 -24.88 7.66 -148.98 -1.14 -26.02 16 13 C -0.55 -30.56 8.61 25.60 0.22 -30.34 16 14 H 0.05 2.82 6.52 -2.91 -0.02 2.80 16 15 C 0.03 1.48 5.47 84.65 0.46 1.94 16 16 N -0.94 -58.76 13.96 21.44 0.30 -58.46 16 17 Si 0.97 48.41 26.18 68.60 1.80 50.21 16 18 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 19 H -0.31 -15.22 7.11 99.48 0.71 -14.52 16 20 H -0.26 -12.85 6.54 99.48 0.65 -12.20 16 21 H 0.05 1.42 8.12 -2.39 -0.02 1.40 16 22 H 0.06 2.09 5.98 -2.39 -0.01 2.07 16 23 H 0.05 1.34 8.12 -2.39 -0.02 1.32 16 24 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.04 1.86 6.25 -2.39 -0.01 1.84 16 31 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.37 14.17 9.04 -74.06 -0.67 13.50 16 33 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -62.89 250.98 3.24 -59.65 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.35 Total: 15.00 kcal Atomic # 6 Polarization: -42.32 SS G_CDS: 1.94 Total: -40.39 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: 0.30 Total: -58.46 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -1.14 Total: -26.02 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 1.80 Total: 50.21 kcal Total: -62.89 3.24 -59.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307471739.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.731 kcal (2) G-P(sol) polarization free energy of solvation -62.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds