Wall clock time and date at job start Mon Mar 30 2020 02:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47303 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00257 * 2 1 3 5 5 C 1.52997 * 109.47415 * 300.00127 * 4 2 1 6 6 C 1.53006 * 109.47164 * 300.00027 * 5 4 2 7 7 C 1.52999 * 109.46626 * 59.99702 * 6 5 4 8 8 C 1.52996 * 109.47131 * 120.00621 * 2 1 3 9 9 H 1.09000 * 109.47054 * 179.97438 * 8 2 1 10 10 C 1.53002 * 109.46969 * 299.99938 * 8 2 1 11 11 H 1.09000 * 109.47312 * 60.00061 * 10 8 2 12 12 O 1.42898 * 109.46791 * 300.00018 * 10 8 2 13 13 C 1.50696 * 109.47300 * 180.02562 * 10 8 2 14 14 H 1.08008 * 119.99563 * 0.02562 * 13 10 8 15 15 C 1.37876 * 120.00339 * 179.97438 * 13 10 8 16 16 N 1.31514 * 119.99769 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 120.00300 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47057 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47389 * 120.00056 * 17 15 13 20 20 H 1.48504 * 109.47102 * 240.00405 * 17 15 13 21 21 H 1.09001 * 109.47502 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47533 * 299.99883 * 1 2 3 23 23 H 1.09002 * 109.47153 * 59.99513 * 1 2 3 24 24 H 1.09000 * 109.46986 * 180.02562 * 4 2 1 25 25 H 1.09001 * 109.47601 * 60.00732 * 4 2 1 26 26 H 1.09001 * 109.46922 * 180.02562 * 5 4 2 27 27 H 1.09000 * 109.47140 * 59.99976 * 5 4 2 28 28 H 1.08993 * 109.46955 * 180.02562 * 6 5 4 29 29 H 1.09000 * 109.47050 * 300.00004 * 6 5 4 30 30 H 1.09000 * 109.47160 * 60.00369 * 7 6 5 31 31 H 1.09002 * 109.46719 * 180.02562 * 7 6 5 32 32 H 0.96709 * 114.00178 * 299.99665 * 12 10 8 33 33 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5299 -2.1637 -1.2494 6 6 2.0399 -2.8851 -0.0002 7 6 1.5299 -2.1638 1.2490 8 6 2.0400 -0.7214 1.2491 9 1 3.1300 -0.7218 1.2489 10 6 1.5300 -0.0002 2.4984 11 1 0.4399 -0.0002 2.4985 12 8 2.0063 1.3470 2.4985 13 6 2.0328 -0.7103 3.7288 14 1 2.6543 -1.5880 3.6296 15 6 1.7002 -0.2390 4.9812 16 7 0.9438 0.8300 5.1019 17 14 2.3241 -1.1188 6.5063 18 1 3.1498 -2.2850 6.1021 19 1 3.1491 -0.1849 7.3139 20 1 1.1697 -1.5858 7.3154 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 3.1299 -0.7216 -1.2491 25 1 1.6767 -0.2073 -2.1393 26 1 1.8936 -2.6775 -2.1393 27 1 0.4399 -2.1637 -1.2494 28 1 1.6769 -3.9128 -0.0006 29 1 3.1299 -2.8851 -0.0003 30 1 0.4399 -2.1638 1.2490 31 1 1.8937 -2.6775 2.1390 32 1 2.9704 1.4234 2.4985 33 1 0.7095 1.1613 5.9829 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307471740.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:29 Heat of formation + Delta-G solvation = -85.507490 kcal Electronic energy + Delta-G solvation = -13560.178310 eV Core-core repulsion = 11391.402370 eV Total energy + Delta-G solvation = -2168.775941 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.86426 -35.13106 -32.10443 -31.27798 -30.57848 -26.78198 -25.58454 -22.99791 -21.51598 -20.21577 -17.84203 -16.79356 -15.28093 -14.50846 -14.38259 -14.29618 -13.57805 -13.19842 -12.58993 -12.36675 -12.19568 -11.81834 -11.30800 -11.08337 -11.06142 -10.89953 -10.60967 -10.51342 -10.20594 -10.00609 -9.95773 -9.44275 -9.32783 -8.68297 -8.46591 -7.91740 -5.93932 -4.10159 3.29292 3.37795 3.40943 4.43757 5.19727 5.27479 5.30952 5.34329 5.75690 5.83850 5.90491 5.94909 6.08067 6.09807 6.19656 6.27664 6.41989 6.48846 6.53809 6.57279 6.64468 6.72116 6.87188 7.00207 7.10386 7.15849 7.25109 7.85431 7.97437 8.30160 8.93114 9.47180 9.66805 11.10256 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.048522 B = 0.011112 C = 0.009806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.919513 B = 2519.237300 C = 2854.643212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 H 0.068 0.932 4 C -0.113 4.113 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.105 4.105 8 C -0.104 4.104 9 H 0.053 0.947 10 C 0.231 3.769 11 H 0.058 0.942 12 O -0.567 6.567 13 C -0.565 4.565 14 H 0.057 0.943 15 C 0.077 3.923 16 N -0.862 5.862 17 Si 0.884 3.116 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.053 0.947 22 H 0.064 0.936 23 H 0.038 0.962 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.342 0.658 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.336 -4.287 -9.474 10.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.101 4.101 3 H 0.086 0.914 4 C -0.151 4.151 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.142 4.142 8 C -0.123 4.123 9 H 0.071 0.929 10 C 0.174 3.826 11 H 0.076 0.924 12 O -0.369 6.369 13 C -0.603 4.603 14 H 0.075 0.925 15 C -0.129 4.129 16 N -0.498 5.498 17 Si 0.711 3.289 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 H 0.072 0.928 22 H 0.083 0.917 23 H 0.057 0.943 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.186 0.814 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.581 -4.037 -9.355 10.206 hybrid contribution 0.933 -0.668 0.956 1.493 sum 1.514 -4.705 -8.400 9.746 Atomic orbital electron populations 1.21929 0.96074 1.01240 1.01147 1.21040 0.95626 0.99230 0.94252 0.91406 1.21580 0.99967 0.95570 0.97944 1.21551 1.00777 0.95938 0.97300 1.21580 1.00245 0.98220 0.95639 1.21464 1.00371 0.95873 0.96509 1.21856 0.99158 0.94945 0.96292 0.92881 1.19469 0.95123 0.79128 0.88879 0.92441 1.86551 1.23413 1.29933 1.96998 1.21793 1.33604 1.13293 0.91561 0.92530 1.25057 0.94374 0.94455 0.98965 1.70090 1.35025 1.21768 1.22964 0.86700 0.78757 0.79846 0.83572 1.19768 1.21023 1.21003 0.92810 0.91746 0.94303 0.92745 0.93106 0.93329 0.92028 0.93097 0.92760 0.92470 0.91242 0.81447 0.93231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.15 37.16 0.30 -2.26 16 2 C -0.08 -1.48 2.58 -90.62 -0.23 -1.71 16 3 H 0.07 1.28 7.68 -51.93 -0.40 0.88 16 4 C -0.11 -1.69 5.45 -26.73 -0.15 -1.83 16 5 C -0.12 -1.67 5.65 -26.73 -0.15 -1.82 16 6 C -0.12 -1.83 5.92 -26.73 -0.16 -1.99 16 7 C -0.10 -1.96 4.68 -26.73 -0.13 -2.08 16 8 C -0.10 -2.09 1.70 -90.62 -0.15 -2.25 16 9 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 10 C 0.23 5.78 2.06 -27.88 -0.06 5.72 16 11 H 0.06 1.59 6.43 -51.93 -0.33 1.26 16 12 O -0.57 -14.63 12.06 -35.23 -0.42 -15.06 16 13 C -0.56 -15.38 8.03 -34.44 -0.28 -15.66 16 14 H 0.06 1.52 6.71 -52.48 -0.35 1.16 16 15 C 0.08 2.16 5.40 -17.82 -0.10 2.06 16 16 N -0.86 -25.71 12.84 55.43 0.71 -25.00 16 17 Si 0.88 21.34 29.54 -169.99 -5.02 16.32 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H 0.05 0.89 4.81 -51.93 -0.25 0.64 16 22 H 0.06 1.28 6.43 -51.93 -0.33 0.95 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.86 6.43 -51.93 -0.33 0.53 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 1.08 6.43 -51.93 -0.33 0.75 16 31 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 32 H 0.34 7.91 9.04 45.56 0.41 8.32 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 251.24 15.07 3.79 3.79 Total: -1.00 -29.44 251.24 -6.40 -35.84 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -4.36 Total: 5.92 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -1.09 Total: -21.81 kcal Atomic # 7 Polarization: -25.71 SS G_CDS: 0.71 Total: -25.00 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.42 Total: -15.06 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -29.44 -6.40 -35.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307471740.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.665 kcal (2) G-P(sol) polarization free energy of solvation -29.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds