Wall clock time and date at job start Mon Mar 30 2020 02:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47303 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00257 * 2 1 3 5 5 C 1.52997 * 109.47415 * 300.00127 * 4 2 1 6 6 C 1.53006 * 109.47164 * 300.00027 * 5 4 2 7 7 C 1.52999 * 109.46626 * 59.99702 * 6 5 4 8 8 C 1.52996 * 109.47131 * 120.00621 * 2 1 3 9 9 H 1.09000 * 109.47054 * 179.97438 * 8 2 1 10 10 C 1.53002 * 109.46969 * 299.99938 * 8 2 1 11 11 H 1.09000 * 109.47312 * 60.00061 * 10 8 2 12 12 O 1.42898 * 109.46791 * 300.00018 * 10 8 2 13 13 C 1.50696 * 109.47300 * 180.02562 * 10 8 2 14 14 H 1.08008 * 119.99563 * 0.02562 * 13 10 8 15 15 C 1.37876 * 120.00339 * 179.97438 * 13 10 8 16 16 N 1.31514 * 119.99769 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 120.00300 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47057 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47389 * 120.00056 * 17 15 13 20 20 H 1.48504 * 109.47102 * 240.00405 * 17 15 13 21 21 H 1.09001 * 109.47502 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47533 * 299.99883 * 1 2 3 23 23 H 1.09002 * 109.47153 * 59.99513 * 1 2 3 24 24 H 1.09000 * 109.46986 * 180.02562 * 4 2 1 25 25 H 1.09001 * 109.47601 * 60.00732 * 4 2 1 26 26 H 1.09001 * 109.46922 * 180.02562 * 5 4 2 27 27 H 1.09000 * 109.47140 * 59.99976 * 5 4 2 28 28 H 1.08993 * 109.46955 * 180.02562 * 6 5 4 29 29 H 1.09000 * 109.47050 * 300.00004 * 6 5 4 30 30 H 1.09000 * 109.47160 * 60.00369 * 7 6 5 31 31 H 1.09002 * 109.46719 * 180.02562 * 7 6 5 32 32 H 0.96709 * 114.00178 * 299.99665 * 12 10 8 33 33 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5299 -2.1637 -1.2494 6 6 2.0399 -2.8851 -0.0002 7 6 1.5299 -2.1638 1.2490 8 6 2.0400 -0.7214 1.2491 9 1 3.1300 -0.7218 1.2489 10 6 1.5300 -0.0002 2.4984 11 1 0.4399 -0.0002 2.4985 12 8 2.0063 1.3470 2.4985 13 6 2.0328 -0.7103 3.7288 14 1 2.6543 -1.5880 3.6296 15 6 1.7002 -0.2390 4.9812 16 7 0.9438 0.8300 5.1019 17 14 2.3241 -1.1188 6.5063 18 1 3.1498 -2.2850 6.1021 19 1 3.1491 -0.1849 7.3139 20 1 1.1697 -1.5858 7.3154 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 3.1299 -0.7216 -1.2491 25 1 1.6767 -0.2073 -2.1393 26 1 1.8936 -2.6775 -2.1393 27 1 0.4399 -2.1637 -1.2494 28 1 1.6769 -3.9128 -0.0006 29 1 3.1299 -2.8851 -0.0003 30 1 0.4399 -2.1638 1.2490 31 1 1.8937 -2.6775 2.1390 32 1 2.9704 1.4234 2.4985 33 1 0.7095 1.1613 5.9829 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307471740.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:29 Heat of formation + Delta-G solvation = -104.772895 kcal Electronic energy + Delta-G solvation = -13561.013721 eV Core-core repulsion = 11391.402370 eV Total energy + Delta-G solvation = -2169.611351 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.36039 -37.01335 -34.24185 -32.66906 -32.15270 -28.50067 -27.26819 -24.74297 -22.91638 -21.79758 -19.42727 -18.74939 -16.85578 -16.57679 -16.12980 -15.82338 -15.10593 -14.73068 -14.31554 -13.87042 -13.66995 -13.31447 -13.18261 -12.89269 -12.74597 -12.43186 -12.29724 -11.91660 -11.87147 -11.68196 -11.41061 -10.92865 -10.84286 -10.69050 -10.44066 -9.85314 -8.09500 -6.32753 1.37546 1.39277 1.50843 2.40028 3.15662 3.91563 3.96717 4.01612 4.33318 4.42876 4.53747 4.56621 4.62127 4.77941 4.88084 4.90154 4.94502 5.07898 5.18355 5.21583 5.28044 5.31255 5.42306 5.53198 5.58600 5.62301 5.69582 5.79686 5.99333 6.19851 6.79845 7.38047 7.60796 8.94847 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.048522 B = 0.011112 C = 0.009806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.919513 B = 2519.237300 C = 2854.643212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.082 4.082 3 H 0.053 0.947 4 C -0.107 4.107 5 C -0.116 4.116 6 C -0.114 4.114 7 C -0.103 4.103 8 C -0.094 4.094 9 H 0.049 0.951 10 C 0.231 3.769 11 H 0.023 0.977 12 O -0.583 6.583 13 C -0.573 4.573 14 H 0.059 0.941 15 C 0.021 3.979 16 N -0.904 5.904 17 Si 0.953 3.047 18 H -0.263 1.263 19 H -0.281 1.281 20 H -0.281 1.281 21 H 0.062 0.938 22 H 0.027 0.973 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.352 0.648 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.114 -5.701 -10.844 12.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.100 4.100 3 H 0.071 0.929 4 C -0.145 4.145 5 C -0.153 4.153 6 C -0.151 4.151 7 C -0.140 4.140 8 C -0.113 4.113 9 H 0.068 0.932 10 C 0.174 3.826 11 H 0.041 0.959 12 O -0.387 6.387 13 C -0.611 4.611 14 H 0.077 0.923 15 C -0.180 4.180 16 N -0.542 5.542 17 Si 0.778 3.222 18 H -0.187 1.187 19 H -0.207 1.207 20 H -0.207 1.207 21 H 0.081 0.919 22 H 0.046 0.954 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.197 0.803 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.371 -5.465 -10.737 12.125 hybrid contribution 0.675 -0.195 1.377 1.546 sum 2.047 -5.660 -9.360 11.128 Atomic orbital electron populations 1.21872 0.95956 1.01596 1.00487 1.20999 0.95710 0.98570 0.94728 0.92877 1.21538 1.00302 0.95994 0.96638 1.21557 1.00931 0.95217 0.97575 1.21535 1.00475 0.98848 0.94240 1.21406 0.99861 0.94946 0.97804 1.21654 0.98707 0.95717 0.95200 0.93219 1.19379 0.93304 0.79102 0.90862 0.95909 1.86491 1.24362 1.30653 1.97197 1.22165 1.33026 1.13226 0.92652 0.92328 1.25901 0.94604 0.95178 1.02319 1.70231 1.36701 1.23595 1.23668 0.85609 0.78226 0.78822 0.79521 1.18733 1.20698 1.20658 0.91950 0.95401 0.91890 0.92206 0.91041 0.90461 0.91846 0.91295 0.92332 0.93230 0.93457 0.80331 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.88 8.15 71.98 0.59 -4.29 16 2 C -0.08 -2.82 2.58 -10.79 -0.03 -2.85 16 3 H 0.05 1.98 7.68 -2.39 -0.02 1.96 16 4 C -0.11 -2.85 5.45 30.59 0.17 -2.68 16 5 C -0.12 -2.80 5.65 30.60 0.17 -2.63 16 6 C -0.11 -3.15 5.92 30.60 0.18 -2.97 16 7 C -0.10 -3.77 4.68 30.59 0.14 -3.62 16 8 C -0.09 -3.79 1.70 -10.80 -0.02 -3.81 16 9 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 10 C 0.23 11.88 2.06 29.85 0.06 11.94 16 11 H 0.02 1.34 6.43 -2.39 -0.02 1.32 16 12 O -0.58 -31.05 12.06 -148.98 -1.80 -32.84 16 13 C -0.57 -31.74 8.03 25.60 0.21 -31.53 16 14 H 0.06 3.16 6.71 -2.91 -0.02 3.14 16 15 C 0.02 1.21 5.40 84.65 0.46 1.67 16 16 N -0.90 -55.27 12.84 21.45 0.28 -54.99 16 17 Si 0.95 44.23 29.54 68.60 2.03 46.26 16 18 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 H 0.06 2.00 4.81 -2.39 -0.01 1.99 16 22 H 0.03 1.13 6.43 -2.39 -0.02 1.12 16 23 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 24 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 25 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.06 1.54 6.43 -2.39 -0.02 1.52 16 28 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.05 1.86 6.43 -2.39 -0.02 1.85 16 31 H 0.05 1.91 6.62 -2.39 -0.02 1.90 16 32 H 0.35 16.70 9.04 -74.05 -0.67 16.03 16 33 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -63.71 251.24 2.85 -60.86 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.42 Total: 21.50 kcal Atomic # 6 Polarization: -42.71 SS G_CDS: 1.93 Total: -40.78 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.28 Total: -54.99 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -1.80 Total: -32.84 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -63.71 2.85 -60.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307471740.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.913 kcal (2) G-P(sol) polarization free energy of solvation -63.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds