Wall clock time and date at job start Mon Mar 30 2020 02:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47063 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99853 * 2 1 3 5 5 C 1.53002 * 109.46963 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47092 * 60.00194 * 5 4 2 7 7 C 1.53006 * 109.47445 * 300.00075 * 6 5 4 8 8 C 1.53000 * 109.47233 * 120.00371 * 2 1 3 9 9 H 1.09002 * 109.47398 * 59.99826 * 8 2 1 10 10 C 1.52997 * 109.47060 * 299.99657 * 8 2 1 11 11 H 1.08998 * 109.47533 * 59.99948 * 10 8 2 12 12 O 1.42905 * 109.47264 * 300.00236 * 10 8 2 13 13 C 1.50697 * 109.47466 * 180.02562 * 10 8 2 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 10 8 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 10 8 16 16 N 1.31519 * 119.99563 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 120.00432 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.46616 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47104 * 119.99966 * 17 15 13 20 20 H 1.48489 * 109.47200 * 240.00246 * 17 15 13 21 21 H 1.09000 * 109.46986 * 299.99832 * 1 2 3 22 22 H 1.08993 * 109.47662 * 60.00055 * 1 2 3 23 23 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47437 * 60.00474 * 4 2 1 25 25 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 26 26 H 1.09002 * 109.47067 * 300.00341 * 5 4 2 27 27 H 1.09000 * 109.47312 * 180.02562 * 5 4 2 28 28 H 1.09001 * 109.47375 * 180.02562 * 6 5 4 29 29 H 1.09002 * 109.47497 * 59.99850 * 6 5 4 30 30 H 1.09002 * 109.46589 * 300.00331 * 7 6 5 31 31 H 1.08996 * 109.47165 * 179.97438 * 7 6 5 32 32 H 0.96696 * 114.00036 * 299.99911 * 12 10 8 33 33 H 0.97002 * 119.99731 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5699 -0.7208 -1.2497 6 6 4.0805 -1.4417 -0.0005 7 6 3.5706 -0.7205 1.2489 8 6 2.0401 -0.7213 1.2492 9 1 1.6767 -1.7490 1.2492 10 6 1.5301 -0.0001 2.4985 11 1 0.4402 0.0000 2.4986 12 8 2.0065 1.3472 2.4985 13 6 2.0330 -0.7101 3.7289 14 1 2.6545 -1.5878 3.6298 15 6 1.7005 -0.2388 4.9812 16 7 0.9440 0.8303 5.1018 17 14 2.3232 -1.1193 6.5064 18 1 3.1480 -2.2861 6.1021 19 1 3.1488 -0.1861 7.3143 20 1 1.1683 -1.5854 7.3151 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.6766 -0.2075 -2.1393 25 1 1.6766 -1.7490 -1.2493 26 1 3.9329 0.3070 -1.2499 27 1 3.9332 -1.2343 -2.1399 28 1 5.1705 -1.4409 -0.0005 29 1 3.7175 -2.4695 -0.0002 30 1 3.9335 0.3073 1.2486 31 1 3.9339 -1.2343 2.1388 32 1 2.9704 1.4236 2.4985 33 1 0.7104 1.1622 5.9829 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307471741.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:31 Heat of formation + Delta-G solvation = -88.702662 kcal Electronic energy + Delta-G solvation = -13536.892334 eV Core-core repulsion = 11367.977840 eV Total energy + Delta-G solvation = -2168.914494 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.68320 -35.01586 -32.13256 -31.95882 -30.30268 -26.72755 -25.40207 -23.21101 -20.83779 -20.21830 -18.70947 -16.75591 -14.99133 -14.53894 -14.05837 -14.01135 -13.77943 -13.46085 -13.18579 -12.16415 -12.04139 -11.51891 -11.42462 -11.11484 -10.93390 -10.90579 -10.67587 -10.55569 -10.29266 -9.97348 -9.87872 -9.65047 -9.41534 -8.68431 -8.42457 -7.91116 -5.93736 -4.09959 3.29424 3.37915 3.41053 4.43921 5.18833 5.27645 5.30624 5.33623 5.69637 5.76709 5.97984 6.00692 6.08408 6.10279 6.15917 6.28644 6.36802 6.39894 6.47324 6.61202 6.65853 6.72609 6.85485 6.91351 7.11495 7.13412 7.29948 7.84892 7.95190 8.30272 8.93139 9.47954 9.67114 11.10437 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.046277 B = 0.011175 C = 0.009867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.909953 B = 2505.065079 C = 2837.159893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 H 0.069 0.931 4 C -0.113 4.113 5 C -0.116 4.116 6 C -0.119 4.119 7 C -0.107 4.107 8 C -0.105 4.105 9 H 0.058 0.942 10 C 0.231 3.769 11 H 0.057 0.943 12 O -0.565 6.565 13 C -0.565 4.565 14 H 0.057 0.943 15 C 0.077 3.923 16 N -0.862 5.862 17 Si 0.884 3.116 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.066 0.934 22 H 0.040 0.960 23 H 0.045 0.955 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.341 0.659 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.411 -2.812 -9.485 10.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 H 0.088 0.912 4 C -0.151 4.151 5 C -0.154 4.154 6 C -0.157 4.157 7 C -0.145 4.145 8 C -0.124 4.124 9 H 0.076 0.924 10 C 0.174 3.826 11 H 0.075 0.925 12 O -0.368 6.368 13 C -0.603 4.603 14 H 0.075 0.925 15 C -0.129 4.129 16 N -0.498 5.498 17 Si 0.711 3.289 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 H 0.085 0.915 22 H 0.059 0.941 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.185 0.815 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.658 -2.564 -9.367 10.069 hybrid contribution 0.885 -0.707 0.954 1.481 sum 3.543 -3.270 -8.413 9.697 Atomic orbital electron populations 1.21838 0.96097 1.00918 1.01373 1.21080 0.95023 0.99797 0.94223 0.91228 1.21617 0.95196 1.00316 0.97939 1.21507 0.96127 1.00370 0.97361 1.21575 0.99148 0.99362 0.95578 1.21497 0.96411 0.99903 0.96673 1.21873 0.94710 0.99491 0.96292 0.92355 1.19436 0.94928 0.79338 0.88893 0.92494 1.86543 1.23466 1.29831 1.96993 1.21787 1.33616 1.13309 0.91565 0.92528 1.25058 0.94359 0.94477 0.98958 1.70093 1.35009 1.21776 1.22957 0.86697 0.78748 0.79845 0.83576 1.19774 1.21019 1.21021 0.91540 0.94106 0.93589 0.93116 0.92690 0.92394 0.93201 0.93096 0.92691 0.92740 0.91179 0.81452 0.93237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 8.84 37.16 0.33 -2.20 16 2 C -0.08 -1.47 2.10 -90.62 -0.19 -1.66 16 3 H 0.07 1.32 7.68 -51.93 -0.40 0.92 16 4 C -0.11 -1.69 5.20 -26.73 -0.14 -1.83 16 5 C -0.12 -1.63 5.92 -26.73 -0.16 -1.79 16 6 C -0.12 -1.81 5.92 -26.73 -0.16 -1.97 16 7 C -0.11 -1.97 4.65 -26.70 -0.12 -2.09 16 8 C -0.10 -2.11 1.57 -90.59 -0.14 -2.26 16 9 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 10 C 0.23 5.78 2.28 -27.89 -0.06 5.72 16 11 H 0.06 1.58 6.43 -51.93 -0.33 1.24 16 12 O -0.57 -14.50 12.01 -35.23 -0.42 -14.92 16 13 C -0.56 -15.39 8.03 -34.44 -0.28 -15.67 16 14 H 0.06 1.51 6.71 -52.49 -0.35 1.16 16 15 C 0.08 2.16 5.40 -17.82 -0.10 2.06 16 16 N -0.86 -25.69 12.84 55.43 0.71 -24.97 16 17 Si 0.88 21.34 29.54 -169.99 -5.02 16.32 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H 0.07 1.32 6.43 -51.93 -0.33 0.98 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.99 6.78 -51.93 -0.35 0.64 16 31 H 0.07 1.40 6.62 -51.93 -0.34 1.05 16 32 H 0.34 7.94 7.32 45.56 0.33 8.28 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 255.19 15.07 3.85 3.85 Total: -1.00 -29.26 255.19 -6.63 -35.89 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -4.72 Total: 5.52 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -1.02 Total: -21.68 kcal Atomic # 7 Polarization: -25.69 SS G_CDS: 0.71 Total: -24.97 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.42 Total: -14.92 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.26 -6.63 -35.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307471741.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.811 kcal (2) G-P(sol) polarization free energy of solvation -29.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds