Wall clock time and date at job start Mon Mar 30 2020 02:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47063 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99853 * 2 1 3 5 5 C 1.53002 * 109.46963 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47092 * 60.00194 * 5 4 2 7 7 C 1.53006 * 109.47445 * 300.00075 * 6 5 4 8 8 C 1.53000 * 109.47233 * 120.00371 * 2 1 3 9 9 H 1.09002 * 109.47398 * 59.99826 * 8 2 1 10 10 C 1.52997 * 109.47060 * 299.99657 * 8 2 1 11 11 H 1.08998 * 109.47533 * 59.99948 * 10 8 2 12 12 O 1.42905 * 109.47264 * 300.00236 * 10 8 2 13 13 C 1.50697 * 109.47466 * 180.02562 * 10 8 2 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 10 8 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 10 8 16 16 N 1.31519 * 119.99563 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 120.00432 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.46616 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47104 * 119.99966 * 17 15 13 20 20 H 1.48489 * 109.47200 * 240.00246 * 17 15 13 21 21 H 1.09000 * 109.46986 * 299.99832 * 1 2 3 22 22 H 1.08993 * 109.47662 * 60.00055 * 1 2 3 23 23 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47437 * 60.00474 * 4 2 1 25 25 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 26 26 H 1.09002 * 109.47067 * 300.00341 * 5 4 2 27 27 H 1.09000 * 109.47312 * 180.02562 * 5 4 2 28 28 H 1.09001 * 109.47375 * 180.02562 * 6 5 4 29 29 H 1.09002 * 109.47497 * 59.99850 * 6 5 4 30 30 H 1.09002 * 109.46589 * 300.00331 * 7 6 5 31 31 H 1.08996 * 109.47165 * 179.97438 * 7 6 5 32 32 H 0.96696 * 114.00036 * 299.99911 * 12 10 8 33 33 H 0.97002 * 119.99731 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5699 -0.7208 -1.2497 6 6 4.0805 -1.4417 -0.0005 7 6 3.5706 -0.7205 1.2489 8 6 2.0401 -0.7213 1.2492 9 1 1.6767 -1.7490 1.2492 10 6 1.5301 -0.0001 2.4985 11 1 0.4402 0.0000 2.4986 12 8 2.0065 1.3472 2.4985 13 6 2.0330 -0.7101 3.7289 14 1 2.6545 -1.5878 3.6298 15 6 1.7005 -0.2388 4.9812 16 7 0.9440 0.8303 5.1018 17 14 2.3232 -1.1193 6.5064 18 1 3.1480 -2.2861 6.1021 19 1 3.1488 -0.1861 7.3143 20 1 1.1683 -1.5854 7.3151 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.6766 -0.2075 -2.1393 25 1 1.6766 -1.7490 -1.2493 26 1 3.9329 0.3070 -1.2499 27 1 3.9332 -1.2343 -2.1399 28 1 5.1705 -1.4409 -0.0005 29 1 3.7175 -2.4695 -0.0002 30 1 3.9335 0.3073 1.2486 31 1 3.9339 -1.2343 2.1388 32 1 2.9704 1.4236 2.4985 33 1 0.7104 1.1622 5.9829 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307471741.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:30 Heat of formation + Delta-G solvation = -107.388040 kcal Electronic energy + Delta-G solvation = -13537.702593 eV Core-core repulsion = 11367.977840 eV Total energy + Delta-G solvation = -2169.724753 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.21179 -36.83566 -34.20667 -33.41811 -31.88343 -28.52757 -26.96743 -24.96465 -22.33310 -21.61954 -20.24765 -18.84410 -16.72536 -16.60725 -15.60200 -15.52463 -15.21444 -15.10394 -14.74261 -13.75690 -13.63087 -13.20889 -13.04158 -12.81418 -12.70662 -12.53787 -12.23654 -11.97039 -11.87657 -11.61075 -11.40339 -11.15854 -10.93056 -10.72481 -10.36838 -9.83947 -8.09226 -6.32495 1.37752 1.39472 1.51037 2.40255 3.16134 3.90579 3.99356 4.01925 4.29855 4.39591 4.48662 4.66007 4.66402 4.76634 4.79366 4.86419 4.92064 5.06756 5.15265 5.27191 5.30102 5.38443 5.44855 5.47049 5.53479 5.61827 5.71310 5.78306 5.95359 6.19944 6.79857 7.38389 7.61073 8.95101 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.046277 B = 0.011175 C = 0.009867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.909953 B = 2505.065079 C = 2837.159893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 H 0.056 0.944 4 C -0.108 4.108 5 C -0.114 4.114 6 C -0.114 4.114 7 C -0.104 4.104 8 C -0.095 4.095 9 H 0.050 0.950 10 C 0.230 3.770 11 H 0.021 0.979 12 O -0.579 6.579 13 C -0.573 4.573 14 H 0.059 0.941 15 C 0.021 3.979 16 N -0.903 5.903 17 Si 0.953 3.047 18 H -0.263 1.263 19 H -0.281 1.281 20 H -0.281 1.281 21 H 0.030 0.970 22 H 0.065 0.935 23 H 0.052 0.948 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.350 0.650 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.647 -3.861 -10.814 12.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.145 4.145 5 C -0.151 4.151 6 C -0.151 4.151 7 C -0.142 4.142 8 C -0.114 4.114 9 H 0.068 0.932 10 C 0.173 3.827 11 H 0.038 0.962 12 O -0.383 6.383 13 C -0.611 4.611 14 H 0.077 0.923 15 C -0.180 4.180 16 N -0.542 5.542 17 Si 0.778 3.222 18 H -0.187 1.187 19 H -0.206 1.206 20 H -0.207 1.207 21 H 0.049 0.951 22 H 0.084 0.916 23 H 0.071 0.929 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.195 0.805 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.906 -3.626 -10.708 11.961 hybrid contribution 0.469 -0.355 1.359 1.481 sum 4.375 -3.981 -9.348 11.063 Atomic orbital electron populations 1.21803 0.96156 1.01191 1.00838 1.21033 0.95034 0.99112 0.94672 0.92557 1.21573 0.96004 1.00270 0.96656 1.21510 0.95219 1.00674 0.97688 1.21534 1.00276 0.99054 0.94267 1.21429 0.94762 1.00094 0.97868 1.21671 0.96166 0.98389 0.95206 0.93157 1.19320 0.93039 0.79422 0.90884 0.96157 1.86488 1.24314 1.30359 1.97184 1.22162 1.33043 1.13265 0.92656 0.92316 1.25901 0.94582 0.95206 1.02307 1.70234 1.36662 1.23596 1.23663 0.85605 0.78206 0.78828 0.79521 1.18744 1.20649 1.20728 0.95077 0.91572 0.92921 0.91059 0.92197 0.92283 0.90394 0.91235 0.92427 0.92920 0.93277 0.80457 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.93 8.84 71.98 0.64 -4.29 16 2 C -0.08 -2.77 2.10 -10.79 -0.02 -2.79 16 3 H 0.06 2.10 7.68 -2.39 -0.02 2.08 16 4 C -0.11 -2.86 5.20 30.60 0.16 -2.71 16 5 C -0.11 -2.76 5.92 30.59 0.18 -2.58 16 6 C -0.11 -3.13 5.92 30.60 0.18 -2.95 16 7 C -0.10 -3.72 4.65 30.61 0.14 -3.58 16 8 C -0.10 -3.85 1.57 -10.78 -0.02 -3.87 16 9 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 10 C 0.23 11.87 2.28 29.85 0.07 11.94 16 11 H 0.02 1.20 6.43 -2.39 -0.02 1.19 16 12 O -0.58 -30.57 12.01 -148.98 -1.79 -32.36 16 13 C -0.57 -31.77 8.03 25.60 0.21 -31.56 16 14 H 0.06 3.16 6.71 -2.91 -0.02 3.14 16 15 C 0.02 1.22 5.40 84.65 0.46 1.68 16 16 N -0.90 -55.18 12.84 21.45 0.28 -54.90 16 17 Si 0.95 44.22 29.54 68.60 2.03 46.24 16 18 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 21 H 0.03 1.27 6.43 -2.39 -0.02 1.25 16 22 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.05 1.87 6.78 -2.39 -0.02 1.86 16 31 H 0.05 1.93 6.62 -2.39 -0.02 1.92 16 32 H 0.35 16.66 7.32 -74.06 -0.54 16.12 16 33 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -63.29 255.19 3.04 -60.25 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.53 Total: 21.46 kcal Atomic # 6 Polarization: -42.69 SS G_CDS: 1.99 Total: -40.70 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.28 Total: -54.90 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -1.79 Total: -32.36 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -63.29 3.04 -60.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307471741.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.134 kcal (2) G-P(sol) polarization free energy of solvation -63.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds