Wall clock time and date at job start Mon Mar 30 2020 02:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47340 * 2 1 4 4 C 1.53008 * 109.46677 * 239.99849 * 2 1 3 5 5 C 1.52999 * 109.47297 * 300.00202 * 4 2 1 6 6 C 1.52999 * 109.46970 * 300.00016 * 5 4 2 7 7 C 1.53002 * 109.47406 * 60.00277 * 6 5 4 8 8 C 1.52999 * 109.46917 * 120.00242 * 2 1 3 9 9 H 1.09004 * 109.46812 * 179.97438 * 8 2 1 10 10 C 1.52994 * 109.47166 * 299.99336 * 8 2 1 11 11 H 1.08996 * 109.46896 * 55.24777 * 10 8 2 12 12 O 1.42905 * 109.47107 * 175.24458 * 10 8 2 13 13 C 1.50699 * 109.47193 * 295.24622 * 10 8 2 14 14 H 1.07995 * 120.00124 * 359.97438 * 13 10 8 15 15 C 1.37878 * 119.99692 * 179.72201 * 13 10 8 16 16 N 1.31512 * 120.00196 * 0.27729 * 15 13 10 17 17 Si 1.86803 * 119.99859 * 180.27357 * 15 13 10 18 18 H 1.48496 * 109.46954 * 90.00037 * 17 15 13 19 19 H 1.48504 * 109.47097 * 210.00250 * 17 15 13 20 20 H 1.48504 * 109.47155 * 330.00039 * 17 15 13 21 21 H 1.09004 * 109.46684 * 305.71617 * 1 2 3 22 22 H 1.09000 * 109.47074 * 65.71474 * 1 2 3 23 23 H 1.08996 * 109.47353 * 185.71634 * 1 2 3 24 24 H 1.08998 * 109.46831 * 179.97438 * 4 2 1 25 25 H 1.08999 * 109.47082 * 60.00507 * 4 2 1 26 26 H 1.08994 * 109.47159 * 180.02562 * 5 4 2 27 27 H 1.09004 * 109.47115 * 59.99938 * 5 4 2 28 28 H 1.08996 * 109.47290 * 299.99632 * 6 5 4 29 29 H 1.09003 * 109.46838 * 179.97438 * 6 5 4 30 30 H 1.08999 * 109.47361 * 180.02562 * 7 6 5 31 31 H 1.09004 * 109.47274 * 59.99714 * 7 6 5 32 32 H 0.96703 * 113.99938 * 60.00122 * 12 10 8 33 33 H 0.97006 * 119.99983 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5299 -2.1638 -1.2493 6 6 2.0399 -2.8851 -0.0001 7 6 1.5300 -2.1639 1.2492 8 6 2.0400 -0.7213 1.2492 9 1 3.1300 -0.7217 1.2490 10 6 1.5301 0.0000 2.4984 11 1 0.4435 0.0744 2.4569 12 8 1.9130 -0.7352 3.6625 13 6 2.1264 1.3826 2.5587 14 1 2.8019 1.7137 1.7838 15 6 1.8056 2.2269 3.6005 16 7 0.9835 1.8236 4.5445 17 14 2.5388 3.9436 3.6713 18 1 1.6480 4.8921 2.9558 19 1 2.6751 4.3656 5.0885 20 1 3.8762 3.9376 3.0257 21 1 -0.3633 0.6000 0.8344 22 1 -0.3633 0.4227 -0.9367 23 1 -0.3634 -1.0225 0.1024 24 1 3.1299 -0.7210 -1.2496 25 1 1.6767 -0.2075 -2.1393 26 1 1.8935 -2.6778 -2.1390 27 1 0.4399 -2.1637 -1.2493 28 1 3.1299 -2.8852 -0.0002 29 1 1.6761 -3.9126 0.0001 30 1 1.8937 -2.6774 2.1392 31 1 0.4399 -2.1638 1.2493 32 1 2.8689 -0.8408 3.7642 33 1 0.7580 2.4175 5.2776 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307471742.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:32 Heat of formation + Delta-G solvation = -85.839128 kcal Electronic energy + Delta-G solvation = -13576.357761 eV Core-core repulsion = 11407.567439 eV Total energy + Delta-G solvation = -2168.790322 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.85455 -35.13730 -32.12672 -31.45439 -30.25730 -26.85846 -25.65097 -22.89528 -21.56897 -20.21197 -17.76986 -16.77998 -15.27493 -14.60546 -14.48705 -14.23941 -13.46725 -13.19575 -12.68989 -12.35597 -11.91838 -11.82665 -11.32318 -11.17989 -11.09875 -10.90102 -10.61530 -10.48847 -10.25128 -9.99346 -9.92005 -9.43600 -9.32469 -8.67421 -8.46621 -7.92761 -5.93660 -4.10091 3.30339 3.37680 3.40055 4.43883 5.20763 5.28982 5.29503 5.34758 5.77277 5.83753 5.93517 5.96983 6.08809 6.09402 6.18337 6.27431 6.42951 6.49383 6.53038 6.60159 6.61707 6.73095 6.90350 6.99747 7.07601 7.19180 7.29342 7.84608 7.97187 8.30130 8.92963 9.47488 9.66983 11.10463 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047881 B = 0.011216 C = 0.010122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.641792 B = 2495.912243 C = 2765.588125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.075 4.075 3 H 0.075 0.925 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.118 4.118 7 C -0.112 4.112 8 C -0.104 4.104 9 H 0.053 0.947 10 C 0.231 3.769 11 H 0.058 0.942 12 O -0.568 6.568 13 C -0.563 4.563 14 H 0.055 0.945 15 C 0.077 3.923 16 N -0.862 5.862 17 Si 0.884 3.116 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.274 1.274 21 H 0.065 0.935 22 H 0.038 0.962 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.342 0.658 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.265 -5.443 -8.811 10.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.094 4.094 3 H 0.094 0.906 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.149 4.149 8 C -0.123 4.123 9 H 0.072 0.928 10 C 0.173 3.827 11 H 0.076 0.924 12 O -0.370 6.370 13 C -0.601 4.601 14 H 0.073 0.927 15 C -0.128 4.128 16 N -0.499 5.499 17 Si 0.711 3.289 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.084 0.916 22 H 0.057 0.943 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.185 0.815 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.500 -5.423 -8.559 10.145 hybrid contribution 1.011 1.132 -0.067 1.519 sum 1.511 -4.291 -8.626 9.752 Atomic orbital electron populations 1.21918 0.96161 1.01290 1.00935 1.20937 0.95452 0.99655 0.93350 0.90628 1.21618 1.00013 0.95427 0.98169 1.21536 1.00767 0.96062 0.97148 1.21550 1.00219 0.98104 0.95657 1.21566 1.00502 0.96558 0.96314 1.21861 0.99241 0.93751 0.97447 0.92829 1.19496 0.95866 0.87957 0.79337 0.92403 1.86559 1.24968 1.77195 1.48253 1.21714 1.29588 0.99667 1.09154 0.92693 1.25050 0.94439 0.97790 0.95521 1.70080 1.33267 1.35417 1.11090 0.86760 0.79719 0.85216 0.77190 1.20653 1.21248 1.19907 0.91611 0.94283 0.93040 0.92747 0.93019 0.93328 0.92061 0.92733 0.93182 0.92089 0.92416 0.81460 0.93171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 7.96 37.16 0.30 -2.31 16 2 C -0.08 -1.39 2.53 -90.61 -0.23 -1.62 16 3 H 0.08 1.54 6.93 -51.93 -0.36 1.18 16 4 C -0.11 -1.76 5.45 -26.73 -0.15 -1.91 16 5 C -0.12 -1.66 5.65 -26.73 -0.15 -1.81 16 6 C -0.12 -1.75 5.92 -26.73 -0.16 -1.91 16 7 C -0.11 -2.01 4.74 -26.73 -0.13 -2.13 16 8 C -0.10 -2.10 1.66 -90.62 -0.15 -2.25 16 9 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 10 C 0.23 5.77 2.19 -27.89 -0.06 5.71 16 11 H 0.06 1.60 6.31 -51.93 -0.33 1.27 16 12 O -0.57 -14.70 11.87 -35.23 -0.42 -15.12 16 13 C -0.56 -15.31 8.05 -34.44 -0.28 -15.59 16 14 H 0.05 1.47 7.04 -52.49 -0.37 1.10 16 15 C 0.08 2.17 5.40 -17.82 -0.10 2.08 16 16 N -0.86 -25.70 12.84 55.43 0.71 -24.98 16 17 Si 0.88 21.34 29.54 -169.99 -5.02 16.32 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 H 0.06 1.34 6.64 -51.93 -0.34 0.99 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.87 4.83 -51.93 -0.25 0.62 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.86 6.56 -51.93 -0.34 0.52 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 1.13 7.56 -51.93 -0.39 0.74 16 31 H 0.06 1.06 6.31 -51.93 -0.33 0.73 16 32 H 0.34 7.93 9.04 45.56 0.41 8.34 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 251.66 15.07 3.79 3.79 Total: -1.00 -29.40 251.66 -6.43 -35.83 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -4.40 Total: 5.92 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: -1.10 Total: -21.75 kcal Atomic # 7 Polarization: -25.70 SS G_CDS: 0.71 Total: -24.98 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.42 Total: -15.12 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -29.40 -6.43 -35.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307471742.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.011 kcal (2) G-P(sol) polarization free energy of solvation -29.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds