Wall clock time and date at job start Mon Mar 30 2020 02:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47362 * 2 1 4 4 C 1.52996 * 109.47047 * 239.99685 * 2 1 3 5 5 C 1.53004 * 109.46711 * 120.00058 * 2 1 3 6 6 H 1.09006 * 110.41382 * 182.31159 * 5 2 1 7 7 C 1.54477 * 110.37491 * 60.00083 * 5 2 1 8 8 C 1.54510 * 104.18108 * 217.25643 * 7 5 2 9 9 C 1.54478 * 104.06500 * 359.93120 * 8 7 5 10 10 H 1.09003 * 110.36949 * 265.14479 * 9 8 7 11 11 C 1.50700 * 110.37139 * 142.81210 * 9 8 7 12 12 H 1.07998 * 119.99746 * 359.97438 * 11 9 8 13 13 C 1.37873 * 119.99675 * 180.02562 * 11 9 8 14 14 N 1.31519 * 120.00393 * 359.97438 * 13 11 9 15 15 Si 1.86807 * 119.99992 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46730 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47105 * 119.99799 * 15 13 11 18 18 H 1.48489 * 109.47216 * 240.00011 * 15 13 11 19 19 O 1.44415 * 104.80258 * 23.97587 * 9 8 7 20 20 H 1.09010 * 109.47076 * 300.00005 * 1 2 3 21 21 H 1.09000 * 109.46960 * 60.00080 * 1 2 3 22 22 H 1.08998 * 109.47171 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47152 * 179.97438 * 3 2 1 24 24 H 1.09000 * 109.47018 * 299.99885 * 3 2 1 25 25 H 1.09004 * 109.46842 * 59.99540 * 3 2 1 26 26 H 1.08998 * 109.47261 * 300.00100 * 4 2 1 27 27 H 1.09000 * 109.47049 * 60.00289 * 4 2 1 28 28 H 1.09006 * 109.47242 * 180.02562 * 4 2 1 29 29 H 1.09002 * 110.51371 * 98.54158 * 7 5 2 30 30 H 1.08994 * 110.51108 * 335.96806 * 7 5 2 31 31 H 1.09000 * 110.51039 * 118.57850 * 8 7 5 32 32 H 1.09007 * 110.50911 * 241.14516 * 8 7 5 33 33 H 0.96997 * 119.99940 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2493 6 1 3.1290 -0.6948 1.2857 7 6 1.5365 -2.1816 1.2703 8 6 1.2408 -2.4586 2.7614 9 6 1.6019 -1.1333 3.4682 10 1 2.6236 -1.1711 3.8463 11 6 0.6356 -0.8576 4.5913 12 1 -0.1668 -1.5510 4.7957 13 6 0.7753 0.2804 5.3570 14 7 1.7522 1.1250 5.1077 15 14 -0.4229 0.6227 6.7487 16 1 -1.4223 -0.4733 6.8221 17 1 0.3192 0.7020 8.0325 18 1 -1.1176 1.9109 6.4982 19 8 1.4823 -0.1237 2.4426 20 1 -0.3634 0.5139 0.8901 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 3.1300 1.4424 0.0005 24 1 1.6768 1.9563 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.6766 -1.7489 -1.2491 27 1 1.6767 -0.2075 -2.1392 28 1 3.1300 -0.7217 -1.2490 29 1 2.3086 -2.8571 0.9021 30 1 0.6283 -2.2811 0.6760 31 1 0.1859 -2.6927 2.9045 32 1 1.8651 -3.2728 3.1296 33 1 1.8502 1.9258 5.6463 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307501471.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:19 Heat of formation + Delta-G solvation = -87.522709 kcal Electronic energy + Delta-G solvation = -13523.486210 eV Core-core repulsion = 11354.622882 eV Total energy + Delta-G solvation = -2168.863327 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.41932 -36.95004 -34.50798 -32.55267 -29.85894 -28.08983 -27.96428 -26.35331 -23.34496 -21.74976 -19.53932 -18.68155 -16.90193 -16.56527 -16.11796 -15.95499 -14.80392 -14.56980 -14.50479 -14.14534 -13.61961 -13.20005 -12.91664 -12.85472 -12.68326 -12.47783 -12.35892 -12.15227 -11.97297 -11.76855 -11.57381 -11.14598 -11.05262 -10.94371 -10.70873 -9.95690 -8.17064 -6.36976 1.38356 1.39641 1.52344 2.39324 3.04957 3.62252 3.83067 3.96873 4.21726 4.23842 4.37556 4.42016 4.64636 4.74868 4.84550 4.86918 4.91679 4.96851 5.05853 5.07819 5.12390 5.17410 5.26545 5.32265 5.41134 5.51536 5.61793 5.69120 5.73496 6.17546 6.58670 6.95868 7.38224 8.91896 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047434 B = 0.010876 C = 0.009974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.156146 B = 2573.840492 C = 2806.675064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.061 4.061 3 C -0.132 4.132 4 C -0.131 4.131 5 C 0.064 3.936 6 H 0.035 0.965 7 C -0.139 4.139 8 C -0.141 4.141 9 C 0.196 3.804 10 H -0.014 1.014 11 C -0.548 4.548 12 H 0.064 0.936 13 C 0.020 3.980 14 N -0.905 5.905 15 Si 0.963 3.037 16 H -0.261 1.261 17 H -0.275 1.275 18 H -0.281 1.281 19 O -0.378 6.378 20 H 0.029 0.971 21 H 0.069 0.931 22 H 0.059 0.941 23 H 0.050 0.950 24 H 0.072 0.928 25 H 0.026 0.974 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.749 -3.877 -10.778 11.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.061 4.061 3 C -0.189 4.189 4 C -0.188 4.188 5 C 0.005 3.995 6 H 0.053 0.947 7 C -0.176 4.176 8 C -0.179 4.179 9 C 0.140 3.860 10 H 0.003 0.997 11 C -0.586 4.586 12 H 0.082 0.918 13 C -0.182 4.182 14 N -0.543 5.543 15 Si 0.787 3.213 16 H -0.185 1.185 17 H -0.200 1.200 18 H -0.206 1.206 19 O -0.297 6.297 20 H 0.048 0.952 21 H 0.088 0.912 22 H 0.078 0.922 23 H 0.069 0.931 24 H 0.091 0.909 25 H 0.046 0.954 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.754 -3.515 -10.705 11.293 hybrid contribution -0.142 0.313 1.162 1.211 sum -0.896 -3.202 -9.544 10.106 Atomic orbital electron populations 1.21757 0.94407 1.01723 1.00866 1.20561 0.96259 0.95489 0.93759 1.21734 1.00380 0.95836 1.00946 1.21797 1.01057 1.00509 0.95439 1.23090 0.95569 0.92767 0.88049 0.94747 1.22992 1.02162 0.96401 0.96073 1.22916 1.01137 0.98204 0.95622 1.20375 0.93922 0.84650 0.87068 0.99673 1.21494 1.14975 1.08131 1.13950 0.91777 1.25995 0.96869 0.95641 0.99677 1.70187 1.32150 1.11828 1.40114 0.85451 0.79010 0.78255 0.78567 1.18487 1.19999 1.20650 1.89411 1.81549 1.39902 1.18875 0.95213 0.91219 0.92164 0.93133 0.90897 0.95433 0.91603 0.90736 0.92437 0.89800 0.89751 0.92228 0.91518 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.25 8.05 71.98 0.58 -3.67 16 2 C -0.06 -1.98 0.64 -52.18 -0.03 -2.02 16 3 C -0.13 -4.42 8.38 71.98 0.60 -3.82 16 4 C -0.13 -3.11 8.24 71.98 0.59 -2.52 16 5 C 0.06 2.59 2.52 31.10 0.08 2.67 16 6 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 7 C -0.14 -4.88 5.36 31.61 0.17 -4.71 16 8 C -0.14 -6.01 6.62 31.61 0.21 -5.80 16 9 C 0.20 10.70 3.06 30.35 0.09 10.80 16 10 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 11 C -0.55 -32.17 8.77 25.60 0.22 -31.95 16 12 H 0.06 3.62 7.57 -2.91 -0.02 3.60 16 13 C 0.02 1.16 5.43 84.65 0.46 1.62 16 14 N -0.91 -56.46 13.07 21.45 0.28 -56.18 16 15 Si 0.96 45.26 29.54 68.60 2.03 47.29 16 16 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 17 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 19 O -0.38 -20.35 9.54 -148.98 -1.42 -21.77 16 20 H 0.03 1.19 7.62 -2.38 -0.02 1.17 16 21 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 22 H 0.06 1.83 6.11 -2.39 -0.01 1.81 16 23 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.03 1.12 7.86 -2.38 -0.02 1.10 16 26 H 0.06 1.43 7.11 -2.39 -0.02 1.42 16 27 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.08 2.67 5.56 -2.39 -0.01 2.66 16 31 H 0.06 2.53 7.71 -2.39 -0.02 2.51 16 32 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 33 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -67.50 261.66 4.92 -62.58 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: 1.05 Total: 7.48 kcal Atomic # 6 Polarization: -42.38 SS G_CDS: 2.98 Total: -39.40 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.28 Total: -56.18 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -1.42 Total: -21.77 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -67.50 4.92 -62.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307501471.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.943 kcal (2) G-P(sol) polarization free energy of solvation -67.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds