Wall clock time and date at job start Mon Mar 30 2020 02:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46978 * 2 1 4 4 C 1.52997 * 109.46910 * 240.00313 * 2 1 3 5 5 C 1.53001 * 109.47300 * 120.00216 * 2 1 3 6 6 H 1.08989 * 110.67721 * 181.51179 * 5 2 1 7 7 C 1.54997 * 110.61733 * 304.47706 * 5 2 1 8 8 C 1.54814 * 102.09126 * 155.52353 * 7 5 2 9 9 C 1.54092 * 104.18954 * 339.11718 * 8 7 5 10 10 H 1.09003 * 110.00629 * 117.46347 * 9 8 7 11 11 C 1.50696 * 109.88044 * 238.54945 * 9 8 7 12 12 H 1.07995 * 120.00332 * 359.27983 * 11 9 8 13 13 C 1.37880 * 119.99983 * 179.28818 * 11 9 8 14 14 N 1.31517 * 120.00210 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00019 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46845 * 269.99914 * 15 13 11 17 17 H 1.48503 * 109.47399 * 29.99403 * 15 13 11 18 18 H 1.48498 * 109.47295 * 150.00010 * 15 13 11 19 19 O 1.43746 * 107.29240 * 357.97280 * 9 8 7 20 20 H 1.08998 * 109.47049 * 300.00021 * 1 2 3 21 21 H 1.08995 * 109.47280 * 60.00172 * 1 2 3 22 22 H 1.08998 * 109.47056 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46973 * 179.97438 * 3 2 1 24 24 H 1.08995 * 109.47705 * 300.00154 * 3 2 1 25 25 H 1.08999 * 109.47085 * 60.00623 * 3 2 1 26 26 H 1.09003 * 109.47524 * 299.99701 * 4 2 1 27 27 H 1.08997 * 109.47582 * 60.00220 * 4 2 1 28 28 H 1.09006 * 109.47120 * 180.02562 * 4 2 1 29 29 H 1.08997 * 110.90743 * 273.72129 * 7 5 2 30 30 H 1.08997 * 110.90934 * 37.28913 * 7 5 2 31 31 H 1.09008 * 110.48392 * 220.44158 * 8 7 5 32 32 H 1.08994 * 110.48546 * 97.79591 * 8 7 5 33 33 H 0.97000 * 119.99462 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 3.1294 -0.7095 1.2826 7 6 1.4478 -0.0798 2.5299 8 6 1.5252 -1.2478 3.5431 9 6 1.6175 -2.5077 2.6609 10 1 2.5637 -3.0190 2.8387 11 6 0.4692 -3.4339 2.9684 12 1 -0.2531 -3.1658 3.7251 13 6 0.3407 -4.6237 2.2836 14 7 1.2201 -4.9501 1.3617 15 14 -1.0823 -5.7720 2.6652 16 1 -0.6808 -6.7188 3.7365 17 1 -2.2516 -4.9774 3.1197 18 1 -1.4458 -6.5330 1.4429 19 8 1.5447 -2.0768 1.2915 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9564 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.6767 -1.7489 -1.2494 27 1 1.6767 -0.2073 -2.1392 28 1 3.1300 -0.7216 -1.2491 29 1 2.0558 0.7624 2.8600 30 1 0.4147 0.2281 2.3687 31 1 0.6265 -1.2784 4.1593 32 1 2.4137 -1.1530 4.1672 33 1 1.9588 -4.3536 1.1634 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307501472.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:21 Heat of formation + Delta-G solvation = -73.801729 kcal Electronic energy + Delta-G solvation = -13608.345835 eV Core-core repulsion = 11440.077494 eV Total energy + Delta-G solvation = -2168.268341 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.92429 -35.57322 -32.43291 -30.99330 -27.72501 -26.88533 -26.70247 -24.06956 -21.74533 -20.21770 -18.20314 -16.97615 -15.48564 -14.81984 -14.20760 -13.69390 -13.58733 -13.35319 -12.91752 -12.51327 -12.00578 -11.87950 -11.54013 -11.22126 -11.04885 -10.78374 -10.66056 -10.56175 -10.23735 -10.18830 -9.98707 -9.70554 -9.63193 -8.84874 -8.41916 -7.95196 -6.29230 -4.06431 3.45712 3.50361 3.65998 4.57178 4.84295 5.16642 5.27500 5.45639 5.62775 5.66316 5.72835 5.79994 5.90809 6.00554 6.15108 6.17876 6.22159 6.25195 6.34827 6.47168 6.49969 6.62397 6.69569 6.75260 6.78523 6.92640 7.03942 7.36897 8.14891 8.36379 8.60306 8.95545 9.75903 11.12211 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.045136 B = 0.011361 C = 0.010417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.201107 B = 2463.997217 C = 2687.167247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.060 4.060 3 C -0.138 4.138 4 C -0.135 4.135 5 C 0.080 3.920 6 H 0.045 0.955 7 C -0.150 4.150 8 C -0.139 4.139 9 C 0.186 3.814 10 H 0.014 0.986 11 C -0.606 4.606 12 H 0.053 0.947 13 C 0.031 3.969 14 N -0.893 5.893 15 Si 1.070 2.930 16 H -0.288 1.288 17 H -0.289 1.289 18 H -0.284 1.284 19 O -0.362 6.362 20 H 0.052 0.948 21 H 0.042 0.958 22 H 0.070 0.930 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.651 10.001 -1.441 10.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.060 4.060 3 C -0.195 4.195 4 C -0.192 4.192 5 C 0.021 3.979 6 H 0.063 0.937 7 C -0.187 4.187 8 C -0.177 4.177 9 C 0.131 3.869 10 H 0.032 0.968 11 C -0.643 4.643 12 H 0.071 0.929 13 C -0.177 4.177 14 N -0.528 5.528 15 Si 0.898 3.102 16 H -0.215 1.215 17 H -0.215 1.215 18 H -0.210 1.210 19 O -0.281 6.281 20 H 0.071 0.929 21 H 0.061 0.939 22 H 0.089 0.911 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.094 8.425 -2.031 8.667 hybrid contribution 0.843 1.671 0.698 1.998 sum 0.749 10.097 -1.333 10.212 Atomic orbital electron populations 1.21837 0.94323 1.03088 1.00091 1.20475 0.96336 0.94072 0.95122 1.21847 1.00565 0.95793 1.01331 1.21764 1.00116 1.01527 0.95821 1.22863 0.95873 0.86111 0.93013 0.93698 1.23199 1.01367 0.97664 0.96509 1.22914 1.00624 0.95819 0.98352 1.20422 0.96910 0.91047 0.78512 0.96842 1.22060 1.13173 1.04761 1.24314 0.92860 1.25822 1.01261 0.97350 0.93297 1.70631 1.13162 1.40204 1.28832 0.83556 0.75057 0.75462 0.76104 1.21483 1.21499 1.20968 1.89172 1.84480 1.24499 1.29995 0.92899 0.93907 0.91091 0.93074 0.92854 0.92767 0.91325 0.93629 0.93470 0.92523 0.90783 0.91517 0.93448 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.98 37.16 0.30 -2.07 16 2 C -0.06 -1.02 0.66 -154.51 -0.10 -1.12 16 3 C -0.14 -1.89 8.30 37.16 0.31 -1.58 16 4 C -0.13 -2.29 8.35 37.16 0.31 -1.98 16 5 C 0.08 1.61 2.55 -25.68 -0.07 1.55 16 6 H 0.05 0.89 8.14 -51.94 -0.42 0.47 16 7 C -0.15 -2.81 5.54 -24.72 -0.14 -2.95 16 8 C -0.14 -3.02 6.63 -25.21 -0.17 -3.19 16 9 C 0.19 4.93 2.84 -27.31 -0.08 4.85 16 10 H 0.01 0.39 8.00 -51.93 -0.42 -0.02 16 11 C -0.61 -17.58 8.78 -34.44 -0.30 -17.88 16 12 H 0.05 1.52 7.33 -52.49 -0.38 1.14 16 13 C 0.03 0.90 5.41 -17.82 -0.10 0.81 16 14 N -0.89 -27.87 13.55 55.43 0.75 -27.12 16 15 Si 1.07 25.77 29.90 -169.99 -5.08 20.68 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 O -0.36 -9.27 8.51 -35.23 -0.30 -9.57 16 20 H 0.05 0.88 6.03 -51.93 -0.31 0.57 16 21 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.07 1.46 7.70 -51.93 -0.40 1.06 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.71 7.36 -51.93 -0.38 0.32 16 26 H 0.07 1.36 7.78 -51.93 -0.40 0.96 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.91 8.05 -51.93 -0.42 0.49 16 30 H 0.07 1.38 5.68 -51.93 -0.30 1.08 16 31 H 0.07 1.46 7.40 -51.92 -0.38 1.07 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.28 8.84 6.54 -40.82 -0.27 8.57 16 LS Contribution 259.19 15.07 3.91 3.91 Total: -1.00 -30.91 259.19 -6.18 -37.09 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -5.42 Total: -1.42 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: -0.03 Total: -23.56 kcal Atomic # 7 Polarization: -27.87 SS G_CDS: 0.75 Total: -27.12 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -0.30 Total: -9.57 kcal Atomic # 14 Polarization: 25.77 SS G_CDS: -5.08 Total: 20.68 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.91 -6.18 -37.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307501472.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.715 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds