Wall clock time and date at job start Mon Mar 30 2020 02:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46978 * 2 1 4 4 C 1.52997 * 109.46910 * 240.00313 * 2 1 3 5 5 C 1.53001 * 109.47300 * 120.00216 * 2 1 3 6 6 H 1.08989 * 110.67721 * 181.51179 * 5 2 1 7 7 C 1.54997 * 110.61733 * 304.47706 * 5 2 1 8 8 C 1.54814 * 102.09126 * 155.52353 * 7 5 2 9 9 C 1.54092 * 104.18954 * 339.11718 * 8 7 5 10 10 H 1.09003 * 110.00629 * 117.46347 * 9 8 7 11 11 C 1.50696 * 109.88044 * 238.54945 * 9 8 7 12 12 H 1.07995 * 120.00332 * 359.27983 * 11 9 8 13 13 C 1.37880 * 119.99983 * 179.28818 * 11 9 8 14 14 N 1.31517 * 120.00210 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00019 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46845 * 269.99914 * 15 13 11 17 17 H 1.48503 * 109.47399 * 29.99403 * 15 13 11 18 18 H 1.48498 * 109.47295 * 150.00010 * 15 13 11 19 19 O 1.43746 * 107.29240 * 357.97280 * 9 8 7 20 20 H 1.08998 * 109.47049 * 300.00021 * 1 2 3 21 21 H 1.08995 * 109.47280 * 60.00172 * 1 2 3 22 22 H 1.08998 * 109.47056 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46973 * 179.97438 * 3 2 1 24 24 H 1.08995 * 109.47705 * 300.00154 * 3 2 1 25 25 H 1.08999 * 109.47085 * 60.00623 * 3 2 1 26 26 H 1.09003 * 109.47524 * 299.99701 * 4 2 1 27 27 H 1.08997 * 109.47582 * 60.00220 * 4 2 1 28 28 H 1.09006 * 109.47120 * 180.02562 * 4 2 1 29 29 H 1.08997 * 110.90743 * 273.72129 * 7 5 2 30 30 H 1.08997 * 110.90934 * 37.28913 * 7 5 2 31 31 H 1.09008 * 110.48392 * 220.44158 * 8 7 5 32 32 H 1.08994 * 110.48546 * 97.79591 * 8 7 5 33 33 H 0.97000 * 119.99462 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 3.1294 -0.7095 1.2826 7 6 1.4478 -0.0798 2.5299 8 6 1.5252 -1.2478 3.5431 9 6 1.6175 -2.5077 2.6609 10 1 2.5637 -3.0190 2.8387 11 6 0.4692 -3.4339 2.9684 12 1 -0.2531 -3.1658 3.7251 13 6 0.3407 -4.6237 2.2836 14 7 1.2201 -4.9501 1.3617 15 14 -1.0823 -5.7720 2.6652 16 1 -0.6808 -6.7188 3.7365 17 1 -2.2516 -4.9774 3.1197 18 1 -1.4458 -6.5330 1.4429 19 8 1.5447 -2.0768 1.2915 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9564 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.6767 -1.7489 -1.2494 27 1 1.6767 -0.2073 -2.1392 28 1 3.1300 -0.7216 -1.2491 29 1 2.0558 0.7624 2.8600 30 1 0.4147 0.2281 2.3687 31 1 0.6265 -1.2784 4.1593 32 1 2.4137 -1.1530 4.1672 33 1 1.9588 -4.3536 1.1634 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307501472.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:21 Heat of formation + Delta-G solvation = -92.862382 kcal Electronic energy + Delta-G solvation = -13609.172366 eV Core-core repulsion = 11440.077494 eV Total energy + Delta-G solvation = -2169.094873 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.60814 -37.16493 -34.59130 -32.76799 -29.58942 -28.17219 -28.00604 -26.09159 -23.49372 -22.05169 -19.74021 -19.01840 -17.22766 -16.42271 -15.97962 -15.64803 -15.03842 -14.85054 -14.71468 -14.10065 -13.76904 -13.23757 -12.96187 -12.71201 -12.63650 -12.55761 -12.34509 -12.11716 -11.94430 -11.81491 -11.64298 -11.30912 -11.17015 -10.79537 -10.62425 -9.99516 -8.63509 -6.41309 1.50070 1.60311 1.77566 2.56059 3.05987 3.47352 3.73604 3.87233 4.08770 4.12264 4.22127 4.32840 4.48754 4.63434 4.76572 4.79629 4.83278 4.89672 4.94149 5.01261 5.04144 5.09755 5.19929 5.23267 5.33336 5.35681 5.53839 5.61887 5.98196 6.10232 6.52999 6.71149 7.51570 8.76869 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.045136 B = 0.011361 C = 0.010417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.201107 B = 2463.997217 C = 2687.167247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.060 4.060 3 C -0.130 4.130 4 C -0.132 4.132 5 C 0.068 3.932 6 H 0.046 0.954 7 C -0.136 4.136 8 C -0.136 4.136 9 C 0.177 3.823 10 H -0.020 1.020 11 C -0.622 4.622 12 H 0.053 0.947 13 C -0.023 4.023 14 N -0.921 5.921 15 Si 1.118 2.882 16 H -0.269 1.269 17 H -0.270 1.270 18 H -0.284 1.284 19 O -0.391 6.391 20 H 0.060 0.940 21 H 0.070 0.930 22 H 0.025 0.975 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.025 0.975 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.098 12.122 -1.261 12.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.060 4.060 3 C -0.187 4.187 4 C -0.190 4.190 5 C 0.010 3.990 6 H 0.064 0.936 7 C -0.174 4.174 8 C -0.173 4.173 9 C 0.121 3.879 10 H -0.003 1.003 11 C -0.659 4.659 12 H 0.071 0.929 13 C -0.224 4.224 14 N -0.557 5.557 15 Si 0.939 3.061 16 H -0.194 1.194 17 H -0.195 1.195 18 H -0.210 1.210 19 O -0.311 6.311 20 H 0.079 0.921 21 H 0.089 0.911 22 H 0.044 0.956 23 H 0.079 0.921 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.044 0.956 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.635 10.574 -1.839 10.752 hybrid contribution 1.074 1.061 0.626 1.635 sum 0.440 11.635 -1.213 11.706 Atomic orbital electron populations 1.21792 0.94639 1.00609 1.01876 1.20552 0.96085 0.96117 0.93262 1.21788 1.01178 0.92746 1.03018 1.21737 1.00551 0.99360 0.97319 1.23245 0.96120 0.83997 0.95672 0.93617 1.23160 1.02296 0.97481 0.94430 1.22832 1.01308 0.94773 0.98427 1.20336 0.94354 0.92940 0.80235 1.00282 1.22467 1.13602 1.05737 1.24089 0.92908 1.27392 1.02988 0.99492 0.92554 1.70766 1.13955 1.40223 1.30783 0.82951 0.72541 0.74122 0.76452 1.19429 1.19521 1.20996 1.89103 1.84958 1.27872 1.29167 0.92079 0.91149 0.95606 0.92141 0.90693 0.91628 0.95609 0.90870 0.92762 0.88624 0.90424 0.91931 0.91577 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.38 7.98 71.98 0.57 -3.81 16 2 C -0.06 -1.94 0.66 -52.18 -0.03 -1.97 16 3 C -0.13 -3.00 8.30 71.98 0.60 -2.41 16 4 C -0.13 -4.38 8.35 71.98 0.60 -3.78 16 5 C 0.07 2.67 2.55 31.28 0.08 2.75 16 6 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 7 C -0.14 -4.80 5.54 31.90 0.18 -4.62 16 8 C -0.14 -5.77 6.63 31.58 0.21 -5.56 16 9 C 0.18 9.64 2.84 30.22 0.09 9.73 16 10 H -0.02 -1.21 8.00 -2.39 -0.02 -1.23 16 11 C -0.62 -36.95 8.78 25.60 0.22 -36.73 16 12 H 0.05 3.05 7.33 -2.91 -0.02 3.03 16 13 C -0.02 -1.41 5.41 84.65 0.46 -0.95 16 14 N -0.92 -59.67 13.55 21.45 0.29 -59.38 16 15 Si 1.12 52.23 29.90 68.60 2.05 54.29 16 16 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 19 O -0.39 -20.69 8.51 -148.98 -1.27 -21.96 16 20 H 0.06 1.89 6.03 -2.39 -0.01 1.88 16 21 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 22 H 0.02 1.06 7.70 -2.39 -0.02 1.04 16 23 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.06 1.39 7.36 -2.39 -0.02 1.37 16 26 H 0.02 1.04 7.78 -2.39 -0.02 1.02 16 27 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 29 H 0.10 2.65 8.05 -2.39 -0.02 2.63 16 30 H 0.08 2.68 5.68 -2.39 -0.01 2.67 16 31 H 0.06 2.68 7.40 -2.38 -0.02 2.66 16 32 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.26 17.53 6.54 -92.71 -0.61 16.93 16 Total: -1.00 -69.63 259.19 5.27 -64.37 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 1.22 Total: 10.04 kcal Atomic # 6 Polarization: -50.32 SS G_CDS: 2.97 Total: -47.35 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: 0.29 Total: -59.38 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -1.27 Total: -21.96 kcal Atomic # 14 Polarization: 52.23 SS G_CDS: 2.05 Total: 54.29 kcal Total: -69.63 5.27 -64.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307501472.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.497 kcal (2) G-P(sol) polarization free energy of solvation -69.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds