Wall clock time and date at job start Mon Mar 30 2020 02:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 6 6 H 1.09000 * 110.27570 * 300.70341 * 5 2 1 7 7 C 1.54942 * 110.30742 * 178.61148 * 5 2 1 8 8 C 1.55418 * 100.89270 * 204.71122 * 7 5 2 9 9 C 1.54381 * 102.30750 * 34.01109 * 8 7 5 10 10 H 1.09004 * 109.83088 * 98.22421 * 9 8 7 11 11 C 1.50700 * 109.90630 * 219.15598 * 9 8 7 12 12 H 1.07995 * 119.99821 * 359.63448 * 11 9 8 13 13 C 1.37878 * 119.99997 * 179.62992 * 11 9 8 14 14 N 1.31520 * 119.99970 * 0.02562 * 13 11 9 15 15 Si 1.86805 * 120.00103 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47009 * 60.00193 * 15 13 11 17 17 H 1.48497 * 109.47233 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46986 * 300.00439 * 15 13 11 19 19 O 1.43236 * 107.58879 * 338.71518 * 9 8 7 20 20 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 23 23 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 24 24 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 26 26 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 27 27 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 28 28 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 29 29 H 1.09001 * 111.12617 * 322.55874 * 7 5 2 30 30 H 1.08997 * 111.12764 * 86.72734 * 7 5 2 31 31 H 1.08992 * 110.76479 * 275.83157 * 8 7 5 32 32 H 1.09000 * 111.05878 * 152.32158 * 8 7 5 33 33 H 0.96996 * 119.99500 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0401 -0.7213 -1.2492 6 1 1.6738 -1.7477 -1.2687 7 6 3.5889 -0.7022 -1.2865 8 6 3.8478 -0.8520 -2.8116 9 6 2.6576 -0.0833 -3.4246 10 1 2.9694 0.9250 -3.6970 11 6 2.1516 -0.8090 -4.6446 12 1 2.6273 -1.7243 -4.9644 13 6 1.0813 -0.3044 -5.3524 14 7 0.5023 0.8105 -4.9631 15 14 0.4537 -1.2044 -6.8643 16 1 0.0181 -2.5714 -6.4813 17 1 -0.6955 -0.4615 -7.4410 18 1 1.5401 -1.2953 -7.8727 19 8 1.6256 -0.0214 -2.4332 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.6767 1.9563 0.8900 24 1 3.1301 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 -1.7489 1.2493 27 1 3.1300 -0.7217 1.2491 28 1 1.6766 -0.2074 2.1393 29 1 3.9792 0.2448 -0.9137 30 1 4.0057 -1.5426 -0.7315 31 1 3.8250 -1.9011 -3.1062 32 1 4.7942 -0.3917 -3.0953 33 1 -0.2503 1.1655 -5.4614 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307501473.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:23 Heat of formation + Delta-G solvation = -67.942776 kcal Electronic energy + Delta-G solvation = -13545.701559 eV Core-core repulsion = 11377.687282 eV Total energy + Delta-G solvation = -2168.014278 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.77568 -35.35181 -32.29754 -30.81287 -27.93840 -26.80966 -26.64551 -24.42910 -21.46148 -20.06083 -18.03558 -16.40830 -15.49542 -14.96530 -14.36375 -13.68386 -13.45629 -13.21377 -12.63791 -12.12915 -11.90654 -11.79724 -11.57763 -11.17852 -11.07302 -10.83449 -10.61806 -10.51169 -10.40634 -10.11904 -10.04636 -9.62413 -9.48377 -9.09588 -8.45568 -7.70257 -5.91493 -4.04920 3.35417 3.39957 3.42283 4.48065 4.97214 5.26513 5.37232 5.44014 5.67540 5.70806 5.81800 5.94713 5.98380 6.10320 6.22547 6.27063 6.29792 6.42092 6.46173 6.57892 6.61316 6.67980 6.79499 6.82606 6.90019 7.04476 7.08856 7.73863 7.95377 8.37255 8.71965 9.14165 9.66162 11.14927 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047704 B = 0.010988 C = 0.010001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.814453 B = 2547.736381 C = 2799.155711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.067 4.067 3 C -0.136 4.136 4 C -0.138 4.138 5 C 0.089 3.911 6 H 0.047 0.953 7 C -0.156 4.156 8 C -0.146 4.146 9 C 0.208 3.792 10 H 0.035 0.965 11 C -0.545 4.545 12 H 0.056 0.944 13 C 0.079 3.921 14 N -0.863 5.863 15 Si 0.887 3.113 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 O -0.351 6.351 20 H 0.069 0.931 21 H 0.046 0.954 22 H 0.041 0.959 23 H 0.041 0.959 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.951 -1.435 9.228 9.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.067 4.067 3 C -0.193 4.193 4 C -0.195 4.195 5 C 0.030 3.970 6 H 0.065 0.935 7 C -0.194 4.194 8 C -0.184 4.184 9 C 0.152 3.848 10 H 0.053 0.947 11 C -0.582 4.582 12 H 0.074 0.926 13 C -0.126 4.126 14 N -0.500 5.500 15 Si 0.715 3.285 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 O -0.270 6.270 20 H 0.088 0.912 21 H 0.065 0.935 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.611 -1.186 9.155 9.593 hybrid contribution -0.184 -0.686 -0.838 1.098 sum 2.427 -1.872 8.317 8.864 Atomic orbital electron populations 1.21745 0.94609 1.01160 1.01552 1.20621 0.96013 0.95888 0.94190 1.21824 1.00250 0.95633 1.01587 1.21849 1.00745 0.99961 0.96974 1.22644 0.91810 0.94899 0.87617 0.93527 1.23378 0.97527 1.01012 0.97450 1.23214 1.00053 1.01432 0.93683 1.20231 0.82968 0.94945 0.86648 0.94714 1.21373 1.16802 1.10082 1.09987 0.92550 1.25036 0.96169 0.94548 0.96850 1.70030 1.21754 1.19502 1.38669 0.86769 0.78416 0.80062 0.83298 1.20221 1.21241 1.20247 1.88727 1.42229 1.74142 1.21902 0.91183 0.93490 0.93990 0.93995 0.93156 0.91230 0.93072 0.92850 0.93105 0.91188 0.92233 0.91923 0.92559 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.36 37.16 0.31 -2.00 16 2 C -0.07 -1.15 0.65 -154.51 -0.10 -1.25 16 3 C -0.14 -2.29 8.03 37.16 0.30 -1.99 16 4 C -0.14 -1.92 8.26 37.16 0.31 -1.62 16 5 C 0.09 1.83 2.66 -25.71 -0.07 1.77 16 6 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 7 C -0.16 -2.87 5.38 -24.42 -0.13 -3.00 16 8 C -0.15 -3.11 6.53 -24.72 -0.16 -3.27 16 9 C 0.21 5.46 3.36 -27.16 -0.09 5.36 16 10 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 11 C -0.54 -15.62 8.75 -34.44 -0.30 -15.92 16 12 H 0.06 1.57 7.53 -52.49 -0.40 1.18 16 13 C 0.08 2.30 5.41 -17.82 -0.10 2.20 16 14 N -0.86 -26.06 12.91 55.43 0.72 -25.34 16 15 Si 0.89 21.82 29.54 -169.99 -5.02 16.79 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 O -0.35 -9.09 8.95 -35.23 -0.32 -9.41 16 20 H 0.07 1.42 7.80 -51.93 -0.40 1.02 16 21 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.80 6.10 -51.93 -0.32 0.48 16 25 H 0.07 1.37 7.65 -51.93 -0.40 0.97 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.70 7.23 -51.93 -0.38 0.33 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 1.22 5.82 -51.93 -0.30 0.92 16 30 H 0.06 0.95 8.05 -51.93 -0.42 0.54 16 31 H 0.06 1.33 7.66 -51.93 -0.40 0.94 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 261.39 15.07 3.94 3.94 Total: -1.00 -30.18 261.39 -6.24 -36.42 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -5.52 Total: -2.69 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -0.03 Total: -19.72 kcal Atomic # 7 Polarization: -26.06 SS G_CDS: 0.72 Total: -25.34 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -0.32 Total: -9.41 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.18 -6.24 -36.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307501473.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.522 kcal (2) G-P(sol) polarization free energy of solvation -30.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds