Wall clock time and date at job start Mon Mar 30 2020 02:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 6 6 H 1.09000 * 110.27570 * 300.70341 * 5 2 1 7 7 C 1.54942 * 110.30742 * 178.61148 * 5 2 1 8 8 C 1.55418 * 100.89270 * 204.71122 * 7 5 2 9 9 C 1.54381 * 102.30750 * 34.01109 * 8 7 5 10 10 H 1.09004 * 109.83088 * 98.22421 * 9 8 7 11 11 C 1.50700 * 109.90630 * 219.15598 * 9 8 7 12 12 H 1.07995 * 119.99821 * 359.63448 * 11 9 8 13 13 C 1.37878 * 119.99997 * 179.62992 * 11 9 8 14 14 N 1.31520 * 119.99970 * 0.02562 * 13 11 9 15 15 Si 1.86805 * 120.00103 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47009 * 60.00193 * 15 13 11 17 17 H 1.48497 * 109.47233 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46986 * 300.00439 * 15 13 11 19 19 O 1.43236 * 107.58879 * 338.71518 * 9 8 7 20 20 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 23 23 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 24 24 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 26 26 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 27 27 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 28 28 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 29 29 H 1.09001 * 111.12617 * 322.55874 * 7 5 2 30 30 H 1.08997 * 111.12764 * 86.72734 * 7 5 2 31 31 H 1.08992 * 110.76479 * 275.83157 * 8 7 5 32 32 H 1.09000 * 111.05878 * 152.32158 * 8 7 5 33 33 H 0.96996 * 119.99500 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0401 -0.7213 -1.2492 6 1 1.6738 -1.7477 -1.2687 7 6 3.5889 -0.7022 -1.2865 8 6 3.8478 -0.8520 -2.8116 9 6 2.6576 -0.0833 -3.4246 10 1 2.9694 0.9250 -3.6970 11 6 2.1516 -0.8090 -4.6446 12 1 2.6273 -1.7243 -4.9644 13 6 1.0813 -0.3044 -5.3524 14 7 0.5023 0.8105 -4.9631 15 14 0.4537 -1.2044 -6.8643 16 1 0.0181 -2.5714 -6.4813 17 1 -0.6955 -0.4615 -7.4410 18 1 1.5401 -1.2953 -7.8727 19 8 1.6256 -0.0214 -2.4332 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.6767 1.9563 0.8900 24 1 3.1301 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 -1.7489 1.2493 27 1 3.1300 -0.7217 1.2491 28 1 1.6766 -0.2074 2.1393 29 1 3.9792 0.2448 -0.9137 30 1 4.0057 -1.5426 -0.7315 31 1 3.8250 -1.9011 -3.1062 32 1 4.7942 -0.3917 -3.0953 33 1 -0.2503 1.1655 -5.4614 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307501473.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:22 Heat of formation + Delta-G solvation = -86.376334 kcal Electronic energy + Delta-G solvation = -13546.500898 eV Core-core repulsion = 11377.687282 eV Total energy + Delta-G solvation = -2168.813617 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.43872 -36.93717 -34.44376 -32.57148 -29.83115 -28.10049 -27.94828 -26.38488 -23.13295 -21.90994 -19.53006 -18.52002 -17.17677 -16.78659 -16.21131 -15.21225 -14.95542 -14.78966 -14.39933 -13.78696 -13.72884 -13.15350 -12.94190 -12.80025 -12.68116 -12.47500 -12.42528 -12.25135 -11.96834 -11.84792 -11.55918 -11.22559 -11.04428 -10.99274 -10.63506 -9.68498 -8.10768 -6.32513 1.37915 1.40827 1.48372 2.40660 3.08983 3.56963 3.85773 3.93930 4.16354 4.24121 4.39202 4.44966 4.70513 4.73825 4.81621 4.87913 4.94686 4.97715 5.03499 5.10506 5.15254 5.17739 5.27086 5.31449 5.42984 5.56563 5.61786 5.71308 5.81794 6.22286 6.64643 7.13681 7.44785 8.95529 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047704 B = 0.010988 C = 0.010001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.814453 B = 2547.736381 C = 2799.155711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.067 4.067 3 C -0.131 4.131 4 C -0.130 4.130 5 C 0.075 3.925 6 H 0.035 0.965 7 C -0.140 4.140 8 C -0.141 4.141 9 C 0.199 3.801 10 H -0.003 1.003 11 C -0.567 4.567 12 H 0.058 0.942 13 C 0.023 3.977 14 N -0.901 5.901 15 Si 0.957 3.043 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.265 1.265 19 O -0.382 6.382 20 H 0.027 0.973 21 H 0.048 0.952 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.027 0.973 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.749 -2.544 10.704 11.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.067 4.067 3 C -0.188 4.188 4 C -0.188 4.188 5 C 0.017 3.983 6 H 0.053 0.947 7 C -0.177 4.177 8 C -0.178 4.178 9 C 0.143 3.857 10 H 0.015 0.985 11 C -0.604 4.604 12 H 0.076 0.924 13 C -0.179 4.179 14 N -0.539 5.539 15 Si 0.781 3.219 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.190 1.190 19 O -0.302 6.302 20 H 0.046 0.954 21 H 0.067 0.933 22 H 0.089 0.911 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.047 0.953 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.422 -2.306 10.638 11.411 hybrid contribution -0.437 -0.324 -1.260 1.373 sum 2.985 -2.631 9.378 10.187 Atomic orbital electron populations 1.21716 0.95192 1.01079 1.00827 1.20666 0.95653 0.96140 0.94216 1.21775 1.00901 0.95297 1.00850 1.21789 1.01553 0.99963 0.95447 1.22971 0.93756 0.94322 0.87232 0.94692 1.23325 0.95676 1.03138 0.95557 1.23106 0.98586 1.00521 0.95627 1.20119 0.85031 0.93432 0.87101 0.98483 1.21821 1.17042 1.10222 1.11337 0.92390 1.25925 0.96461 0.95344 1.00139 1.70185 1.22313 1.21182 1.40208 0.85663 0.78039 0.78709 0.79467 1.19636 1.20811 1.18952 1.88659 1.42830 1.74984 1.23760 0.95412 0.93263 0.91117 0.91304 0.92012 0.95331 0.92522 0.91526 0.90899 0.89912 0.88757 0.92074 0.90886 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 8.36 71.98 0.60 -3.86 16 2 C -0.07 -2.18 0.65 -52.18 -0.03 -2.21 16 3 C -0.13 -4.24 8.03 71.98 0.58 -3.66 16 4 C -0.13 -3.11 8.26 71.98 0.59 -2.51 16 5 C 0.08 3.06 2.66 31.26 0.08 3.14 16 6 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 7 C -0.14 -4.82 5.38 32.09 0.17 -4.64 16 8 C -0.14 -5.88 6.53 31.89 0.21 -5.67 16 9 C 0.20 10.79 3.36 30.32 0.10 10.89 16 10 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 11 C -0.57 -33.25 8.75 25.60 0.22 -33.03 16 12 H 0.06 3.28 7.53 -2.91 -0.02 3.25 16 13 C 0.02 1.36 5.41 84.65 0.46 1.82 16 14 N -0.90 -56.42 12.91 21.45 0.28 -56.15 16 15 Si 0.96 45.48 29.54 68.60 2.03 47.51 16 16 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 17 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 18 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 19 O -0.38 -20.50 8.95 -148.98 -1.33 -21.84 16 20 H 0.03 1.15 7.80 -2.39 -0.02 1.13 16 21 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 24 H 0.06 1.82 6.10 -2.39 -0.01 1.80 16 25 H 0.03 1.13 7.65 -2.39 -0.02 1.11 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.07 1.43 7.23 -2.39 -0.02 1.41 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.08 2.65 5.82 -2.39 -0.01 2.63 16 30 H 0.09 2.63 8.05 -2.39 -0.02 2.61 16 31 H 0.06 2.54 7.66 -2.39 -0.02 2.52 16 32 H 0.07 2.75 8.14 -2.39 -0.02 2.74 16 33 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -67.60 261.39 5.01 -62.59 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: 1.05 Total: 7.63 kcal Atomic # 6 Polarization: -42.73 SS G_CDS: 2.99 Total: -39.74 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.28 Total: -56.15 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -1.33 Total: -21.84 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -67.60 5.01 -62.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307501473.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.789 kcal (2) G-P(sol) polarization free energy of solvation -67.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds