Wall clock time and date at job start Mon Mar 30 2020 02:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99436 * 2 1 4 4 H 1.48507 * 109.46603 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47443 * 299.99426 * 3 2 1 6 6 H 1.48491 * 109.47344 * 60.00037 * 3 2 1 7 7 C 1.38803 * 120.00330 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00531 * 195.67536 * 7 2 1 9 9 N 1.36937 * 119.99853 * 15.67569 * 7 2 1 10 10 C 1.44581 * 118.64370 * 206.45264 * 9 7 2 11 11 C 1.54863 * 109.59873 * 270.72564 * 10 9 7 12 12 C 1.47091 * 110.32483 * 288.73015 * 11 10 9 13 13 C 1.52570 * 114.32594 * 62.80432 * 12 11 10 14 14 C 1.50757 * 109.27696 * 274.99846 * 13 12 11 15 15 H 1.09001 * 109.43678 * 331.74674 * 14 13 12 16 16 C 1.53003 * 109.25992 * 212.15270 * 14 13 12 17 17 N 1.46896 * 109.47164 * 174.38634 * 16 14 13 18 18 C 1.47604 * 118.64617 * 26.47393 * 9 7 2 19 19 H 0.96997 * 120.00292 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.45102 * 30.76860 * 10 9 7 21 21 H 1.09003 * 109.44967 * 150.71176 * 10 9 7 22 22 H 1.09002 * 109.32425 * 48.99702 * 11 10 9 23 23 H 1.08998 * 109.32665 * 168.63967 * 11 10 9 24 24 H 1.09007 * 108.50939 * 184.05260 * 12 11 10 25 25 H 1.08997 * 108.51472 * 301.54579 * 12 11 10 26 26 H 1.09005 * 109.49056 * 34.94940 * 13 12 11 27 27 H 1.08993 * 109.48876 * 154.99985 * 13 12 11 28 28 H 1.09003 * 109.46800 * 294.38075 * 16 14 13 29 29 H 1.08997 * 109.47288 * 54.37566 * 16 14 13 30 30 H 1.00892 * 111.00502 * 56.04448 * 17 16 14 31 31 H 1.00902 * 110.99753 * 180.02562 * 17 16 14 32 32 H 1.08994 * 108.94945 * 258.55567 * 18 9 7 33 33 H 1.09001 * 108.94244 * 17.27662 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0602 -1.2193 0.2532 9 7 1.3638 -2.3660 -0.3194 10 6 1.8700 -3.6098 0.2167 11 6 2.9232 -4.2024 -0.7517 12 6 2.2707 -4.7070 -1.9696 13 6 1.5617 -3.6357 -2.7926 14 6 0.1723 -3.4266 -2.2461 15 1 -0.1778 -4.3490 -1.7827 16 6 -0.7689 -3.0483 -3.3915 17 7 -2.1472 -2.9748 -2.8887 18 6 0.1794 -2.2993 -1.1976 19 1 -0.4850 0.8400 -0.0004 20 1 2.3317 -3.4257 1.1867 21 1 1.0477 -4.3156 0.3342 22 1 3.6413 -3.4280 -1.0214 23 1 3.4452 -5.0226 -0.2589 24 1 3.0265 -5.1810 -2.5960 25 1 1.5400 -5.4632 -1.6828 26 1 2.1209 -2.7019 -2.7331 27 1 1.5002 -3.9572 -3.8322 28 1 -0.4776 -2.0789 -3.7960 29 1 -0.7080 -3.8025 -4.1760 30 1 -2.2166 -2.3288 -2.1168 31 1 -2.7887 -2.7267 -3.6270 32 1 -0.7195 -2.3789 -0.5863 33 1 0.1736 -1.3381 -1.7115 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307559548.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:38 Heat of formation + Delta-G solvation = -13.063607 kcal Electronic energy + Delta-G solvation = -13645.447630 eV Core-core repulsion = 11512.105843 eV Total energy + Delta-G solvation = -2133.341787 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.81235 -36.25229 -35.30999 -32.72041 -32.01165 -27.92327 -26.55041 -25.48514 -23.30187 -21.22643 -20.37506 -18.61259 -17.07546 -16.74990 -16.00801 -15.89079 -15.50580 -15.14905 -14.46785 -14.03747 -13.82657 -13.64442 -13.00389 -12.90008 -12.70765 -12.66995 -12.28768 -11.99517 -11.60560 -11.41998 -11.33163 -11.20243 -10.95993 -10.42382 -9.57793 -8.61486 -7.84083 -5.29254 1.43103 1.45545 1.55440 2.51345 3.27998 3.67557 3.74529 4.01987 4.12961 4.21686 4.40706 4.51231 4.63821 4.79176 4.84540 4.97209 5.00665 5.06886 5.20655 5.32149 5.35170 5.39167 5.54900 5.62850 5.72092 5.74862 5.84152 6.22937 6.43023 6.63322 7.20894 7.99034 8.37564 9.20590 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.029911 B = 0.014762 C = 0.011256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.875735 B = 1896.358703 C = 2486.944426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.049 4.049 3 Si 0.960 3.040 4 H -0.269 1.269 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.261 4.261 8 H 0.061 0.939 9 N -0.606 5.606 10 C 0.150 3.850 11 C -0.133 4.133 12 C -0.101 4.101 13 C -0.097 4.097 14 C -0.101 4.101 15 H 0.061 0.939 16 C 0.078 3.922 17 N -0.854 5.854 18 C 0.204 3.796 19 H 0.247 0.753 20 H 0.033 0.967 21 H 0.036 0.964 22 H 0.040 0.960 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.040 0.960 27 H 0.071 0.929 28 H 0.013 0.987 29 H 0.085 0.915 30 H 0.339 0.661 31 H 0.346 0.654 32 H -0.008 1.008 33 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.404 -6.987 -6.269 9.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.244 4.244 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.392 4.392 8 H 0.079 0.921 9 N -0.328 5.328 10 C 0.023 3.977 11 C -0.173 4.173 12 C -0.139 4.139 13 C -0.136 4.136 14 C -0.121 4.121 15 H 0.079 0.921 16 C -0.053 4.053 17 N -0.384 5.384 18 C 0.079 3.921 19 H 0.057 0.943 20 H 0.051 0.949 21 H 0.055 0.945 22 H 0.059 0.941 23 H 0.092 0.908 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.089 0.911 28 H 0.031 0.969 29 H 0.103 0.897 30 H 0.152 0.848 31 H 0.159 0.841 32 H 0.010 0.990 33 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.385 -7.662 -6.089 9.885 hybrid contribution 0.234 2.261 0.025 2.273 sum 1.619 -5.401 -6.064 8.281 Atomic orbital electron populations 1.70230 1.06341 1.25372 1.55968 1.25700 0.96068 1.01096 1.01537 0.85314 0.78666 0.80428 0.76720 1.19358 1.21784 1.21985 1.19521 0.92498 0.86319 1.40875 0.92077 1.43866 1.32537 1.02396 1.53971 1.20873 0.94971 0.87260 0.94560 1.21328 0.98717 0.99657 0.97615 1.20289 0.99604 0.97531 0.96445 1.20922 0.94974 0.98966 0.98690 1.21542 0.95327 0.99118 0.96147 0.92094 1.21822 0.88191 0.98969 0.96338 1.58817 1.06698 1.59215 1.13705 1.20712 0.86826 0.95113 0.89437 0.94336 0.94859 0.94519 0.94097 0.90843 0.91592 0.92490 0.94092 0.91056 0.96908 0.89681 0.84812 0.84131 0.99038 0.94443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.04 11.01 21.65 0.24 -54.81 16 2 C -0.05 -2.75 4.87 84.86 0.41 -2.34 16 3 Si 0.96 45.46 29.58 68.60 2.03 47.49 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 6 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 7 C -0.26 -14.56 9.44 84.03 0.79 -13.77 16 8 H 0.06 3.37 7.88 -2.91 -0.02 3.35 16 9 N -0.61 -30.70 2.27 -698.37 -1.59 -32.28 16 10 C 0.15 6.40 5.65 87.37 0.49 6.90 16 11 C -0.13 -4.65 5.74 29.39 0.17 -4.48 16 12 C -0.10 -3.16 5.15 28.61 0.15 -3.01 16 13 C -0.10 -3.36 5.02 29.72 0.15 -3.22 16 14 C -0.10 -3.81 2.20 -11.20 -0.02 -3.84 16 15 H 0.06 2.32 7.31 -2.39 -0.02 2.30 16 16 C 0.08 2.55 6.03 86.30 0.52 3.07 16 17 N -0.85 -27.15 9.62 -186.72 -1.80 -28.94 16 18 C 0.20 9.89 3.38 86.49 0.29 10.19 16 19 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 20 H 0.03 1.45 7.99 -2.39 -0.02 1.43 16 21 H 0.04 1.51 8.06 -2.39 -0.02 1.49 16 22 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 25 H 0.06 1.70 7.36 -2.39 -0.02 1.68 16 26 H 0.04 1.68 7.48 -2.38 -0.02 1.66 16 27 H 0.07 2.06 7.64 -2.39 -0.02 2.04 16 28 H 0.01 0.44 8.03 -2.39 -0.02 0.42 16 29 H 0.08 2.36 7.95 -2.39 -0.02 2.34 16 30 H 0.34 12.29 7.70 -89.70 -0.69 11.60 16 31 H 0.35 8.92 9.08 -89.69 -0.81 8.11 16 32 H -0.01 -0.45 7.45 -2.39 -0.02 -0.47 16 33 H 0.04 2.04 6.08 -2.39 -0.01 2.02 16 Total: -1.00 -61.40 254.05 1.42 -59.97 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -0.42 Total: 19.07 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 2.95 Total: -10.49 kcal Atomic # 7 Polarization: -112.89 SS G_CDS: -3.15 Total: -116.03 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -61.40 1.42 -59.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307559548.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.909 kcal (2) G-P(sol) polarization free energy of solvation -61.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds