Wall clock time and date at job start Mon Mar 30 2020 02:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86802 * 119.99636 * 2 1 4 4 H 1.48494 * 109.47301 * 0.02562 * 3 2 1 5 5 H 1.48494 * 109.46831 * 120.00338 * 3 2 1 6 6 H 1.48501 * 109.47041 * 239.99995 * 3 2 1 7 7 C 1.38808 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00049 * 204.82128 * 7 2 1 9 9 N 1.36938 * 120.00418 * 24.81992 * 7 2 1 10 10 C 1.43429 * 120.53699 * 211.40858 * 9 7 2 11 11 C 1.54401 * 116.38850 * 271.72628 * 10 9 7 12 12 C 1.54843 * 110.07009 * 318.65074 * 11 10 9 13 13 C 1.50128 * 110.81950 * 321.07545 * 12 11 10 14 14 C 1.52522 * 105.41096 * 97.67983 * 13 12 11 15 15 H 1.08993 * 108.40769 * 31.75141 * 14 13 12 16 16 C 1.53005 * 108.52078 * 149.35568 * 14 13 12 17 17 N 1.46893 * 109.47455 * 189.71846 * 16 14 13 18 18 C 1.46235 * 114.27939 * 270.59096 * 14 13 12 19 19 H 0.96998 * 119.99465 * 185.76947 * 1 2 3 20 20 H 1.09000 * 108.16338 * 33.30511 * 10 9 7 21 21 H 1.08999 * 108.15809 * 149.87324 * 10 9 7 22 22 H 1.09007 * 109.44713 * 198.43903 * 11 10 9 23 23 H 1.08994 * 109.35148 * 78.80850 * 11 10 9 24 24 H 1.08998 * 109.21076 * 200.72710 * 12 11 10 25 25 H 1.09005 * 109.20875 * 81.42191 * 12 11 10 26 26 H 1.08999 * 110.24398 * 338.71041 * 13 12 11 27 27 H 1.09000 * 110.37152 * 216.71881 * 13 12 11 28 28 H 1.09000 * 109.46793 * 309.72035 * 16 14 13 29 29 H 1.09000 * 109.47349 * 69.71675 * 16 14 13 30 30 H 1.00900 * 111.00448 * 56.04249 * 17 16 14 31 31 H 1.00899 * 111.00558 * 179.97438 * 17 16 14 32 32 H 1.08997 * 109.85289 * 298.90639 * 18 14 13 33 33 H 1.09004 * 109.90672 * 177.95085 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1039 1.6964 1.2124 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0155 -1.2455 0.3921 9 7 1.4206 -2.3331 -0.4988 10 6 1.7437 -3.6219 0.0413 11 6 2.9487 -4.3494 -0.5931 12 6 2.9253 -4.1744 -2.1315 13 6 1.5211 -4.2550 -2.6563 14 6 1.0639 -2.8086 -2.8147 15 1 1.9316 -2.1990 -3.0665 16 6 0.0689 -2.7376 -3.9749 17 7 -0.2075 -1.3314 -4.2976 18 6 0.4298 -2.2446 -1.6238 19 1 -0.4849 -0.8358 0.0844 20 1 1.9468 -3.5031 1.1056 21 1 0.8682 -4.2629 -0.0624 22 1 2.9012 -5.4109 -0.3495 23 1 3.8734 -3.9308 -0.1959 24 1 3.5255 -4.9597 -2.5910 25 1 3.3491 -3.2035 -2.3885 26 1 0.8817 -4.7770 -1.9444 27 1 1.5049 -4.7635 -3.6203 28 1 0.4927 -3.2341 -4.8478 29 1 -0.8585 -3.2339 -3.6891 30 1 0.6453 -0.8331 -4.5033 31 1 -0.8623 -1.2577 -5.0617 32 1 -0.4646 -2.8158 -1.3750 33 1 0.1650 -1.2024 -1.8026 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307559549.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:39 Heat of formation + Delta-G solvation = -9.018608 kcal Electronic energy + Delta-G solvation = -13710.280808 eV Core-core repulsion = 11577.114425 eV Total energy + Delta-G solvation = -2133.166383 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.15926 -36.32611 -35.30052 -32.60374 -32.08990 -27.90165 -26.41107 -25.59932 -23.36748 -21.17466 -20.68737 -19.04194 -17.02208 -16.45037 -16.15496 -15.92573 -15.56348 -15.16205 -14.69262 -14.31631 -13.73862 -13.57825 -13.32717 -13.02484 -12.56758 -12.53603 -11.92400 -11.91363 -11.67479 -11.43644 -11.26316 -11.10095 -11.04505 -10.33742 -9.47158 -8.78907 -8.16233 -5.35603 1.58091 1.65785 1.84894 2.69259 3.23467 3.58453 3.69468 3.95893 4.07621 4.18638 4.29768 4.35350 4.57426 4.65527 4.73208 4.82289 4.86045 4.90428 4.99362 5.20652 5.28859 5.33742 5.50764 5.54440 5.63203 5.69971 5.96391 6.31737 6.45846 6.68429 7.19417 7.85785 8.36204 9.05568 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.029033 B = 0.015677 C = 0.011854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.203772 B = 1785.608289 C = 2361.567075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.067 4.067 3 Si 1.110 2.890 4 H -0.291 1.291 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.356 4.356 8 H 0.037 0.963 9 N -0.611 5.611 10 C 0.153 3.847 11 C -0.135 4.135 12 C -0.101 4.101 13 C -0.101 4.101 14 C -0.092 4.092 15 H 0.043 0.957 16 C 0.072 3.928 17 N -0.862 5.862 18 C 0.155 3.845 19 H 0.253 0.747 20 H 0.012 0.988 21 H 0.030 0.970 22 H 0.079 0.921 23 H 0.039 0.961 24 H 0.070 0.930 25 H 0.036 0.964 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.043 0.957 29 H 0.065 0.935 30 H 0.341 0.659 31 H 0.348 0.652 32 H 0.006 0.994 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.014 -7.561 -8.307 11.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.265 4.265 3 Si 0.935 3.065 4 H -0.217 1.217 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.486 4.486 8 H 0.055 0.945 9 N -0.333 5.333 10 C 0.025 3.975 11 C -0.175 4.175 12 C -0.139 4.139 13 C -0.139 4.139 14 C -0.112 4.112 15 H 0.062 0.938 16 C -0.060 4.060 17 N -0.393 5.393 18 C 0.032 3.968 19 H 0.063 0.937 20 H 0.031 0.969 21 H 0.049 0.951 22 H 0.097 0.903 23 H 0.057 0.943 24 H 0.088 0.912 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.153 0.847 31 H 0.162 0.838 32 H 0.024 0.976 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.546 -5.860 -7.601 9.930 hybrid contribution 0.529 -1.744 -0.443 1.875 sum 3.076 -7.603 -8.044 11.488 Atomic orbital electron populations 1.70880 1.07468 1.29255 1.49411 1.27044 0.96539 1.04456 0.98451 0.82931 0.73936 0.72590 0.77053 1.21651 1.20564 1.20737 1.19989 0.96816 0.90367 1.41465 0.94542 1.44220 1.49785 1.01684 1.37639 1.20352 0.95670 0.86888 0.94601 1.22685 0.98730 0.99830 0.96284 1.21319 0.96937 1.00472 0.95176 1.21020 0.96686 0.95012 1.01183 1.20552 0.97895 0.96799 0.95933 0.93832 1.21948 0.98661 0.89094 0.96280 1.58569 1.18609 1.13410 1.48730 1.20293 0.89479 1.00745 0.86325 0.93748 0.96938 0.95133 0.90268 0.94253 0.91151 0.94487 0.92154 0.89817 0.93877 0.91691 0.84681 0.83811 0.97551 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.12 12.25 21.65 0.27 -57.86 16 2 C -0.07 -3.95 4.77 84.86 0.40 -3.54 16 3 Si 1.11 52.71 29.99 68.60 2.06 54.77 16 4 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 7 C -0.36 -20.76 9.46 84.03 0.80 -19.97 16 8 H 0.04 2.17 7.94 -2.91 -0.02 2.15 16 9 N -0.61 -31.74 2.38 -708.86 -1.69 -33.43 16 10 C 0.15 6.78 5.13 87.42 0.45 7.23 16 11 C -0.13 -4.81 6.40 31.70 0.20 -4.61 16 12 C -0.10 -3.35 5.65 30.30 0.17 -3.17 16 13 C -0.10 -3.20 5.19 29.51 0.15 -3.05 16 14 C -0.09 -3.47 1.86 -13.03 -0.02 -3.50 16 15 H 0.04 1.84 6.89 -2.39 -0.02 1.83 16 16 C 0.07 2.22 6.01 86.31 0.52 2.74 16 17 N -0.86 -27.58 8.94 -186.72 -1.67 -29.25 16 18 C 0.16 7.47 3.73 83.58 0.31 7.78 16 19 H 0.25 16.25 7.02 -92.71 -0.65 15.60 16 20 H 0.01 0.58 8.00 -2.39 -0.02 0.56 16 21 H 0.03 1.28 6.89 -2.39 -0.02 1.26 16 22 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 23 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 24 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.04 1.41 6.82 -2.38 -0.02 1.40 16 26 H 0.06 1.97 6.28 -2.39 -0.02 1.96 16 27 H 0.08 2.12 7.64 -2.39 -0.02 2.10 16 28 H 0.04 1.10 7.84 -2.39 -0.02 1.09 16 29 H 0.06 2.01 8.13 -2.39 -0.02 1.99 16 30 H 0.34 10.72 8.97 -89.69 -0.80 9.92 16 31 H 0.35 8.86 9.08 -89.69 -0.81 8.04 16 32 H 0.01 0.31 8.13 -2.39 -0.02 0.29 16 33 H 0.07 4.00 5.32 -2.39 -0.01 3.98 16 Total: -1.00 -66.53 252.42 1.55 -64.98 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -0.40 Total: 20.87 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: 2.98 Total: -20.09 kcal Atomic # 7 Polarization: -117.45 SS G_CDS: -3.09 Total: -120.54 kcal Atomic # 14 Polarization: 52.71 SS G_CDS: 2.06 Total: 54.77 kcal Total: -66.53 1.55 -64.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307559549.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.965 kcal (2) G-P(sol) polarization free energy of solvation -66.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds