Wall clock time and date at job start Mon Mar 30 2020 02:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47024 * 2 1 4 4 C 1.52999 * 109.47024 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47024 * 180.02562 * 4 3 2 6 6 H 1.09000 * 110.33340 * 304.20192 * 5 4 3 7 7 C 1.54485 * 110.46619 * 181.89189 * 5 4 3 8 8 C 1.54507 * 104.06070 * 217.14292 * 7 5 4 9 9 C 1.54480 * 104.06663 * 359.97438 * 8 7 5 10 10 H 1.08997 * 110.46654 * 265.10532 * 9 8 7 11 11 C 1.50694 * 110.37228 * 142.80965 * 9 8 7 12 12 H 1.08000 * 120.00563 * 3.16730 * 11 9 8 13 13 C 1.37885 * 119.99902 * 183.16894 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 O 1.44420 * 110.37273 * 66.45637 * 5 4 3 20 20 H 1.08994 * 109.47052 * 60.00069 * 1 2 3 21 21 H 1.08998 * 109.46940 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.46917 * 299.99358 * 1 2 3 23 23 H 1.09005 * 109.47087 * 240.00070 * 2 1 3 24 24 H 1.08994 * 109.47497 * 120.00226 * 2 1 3 25 25 H 1.08997 * 109.47254 * 60.00395 * 3 2 1 26 26 H 1.09002 * 109.46817 * 299.99859 * 3 2 1 27 27 H 1.09004 * 109.47221 * 60.00606 * 4 3 2 28 28 H 1.08994 * 109.47497 * 300.00226 * 4 3 2 29 29 H 1.08996 * 110.50781 * 335.78998 * 7 5 4 30 30 H 1.09005 * 110.50976 * 98.36162 * 7 5 4 31 31 H 1.09005 * 110.51114 * 241.35797 * 8 7 5 32 32 H 1.08995 * 110.51057 * 118.64527 * 8 7 5 33 33 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8850 0.0013 6 1 3.6649 3.4339 -0.8440 7 6 5.6238 2.9122 -0.0458 8 6 6.0062 4.1030 0.8613 9 6 4.6482 4.6549 1.3487 10 1 4.3195 5.4758 0.7114 11 6 4.7514 5.1127 2.7808 12 1 5.7013 5.0734 3.2932 13 6 3.6331 5.5816 3.4369 14 7 2.4764 5.6299 2.8129 15 14 3.7609 6.1484 5.2123 16 1 2.4283 6.6038 5.6837 17 1 4.2276 5.0215 6.0593 18 1 4.7285 7.2710 5.3050 19 8 3.7371 3.5389 1.2425 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.6766 1.9563 -0.8900 27 1 3.9337 0.9286 -0.8892 28 1 3.9330 0.9288 0.8908 29 1 6.0343 1.9832 0.3499 30 1 5.9719 3.0787 -1.0653 31 1 6.5433 4.8607 0.2908 32 1 6.6058 3.7628 1.7056 33 1 1.6896 5.9595 3.2747 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308042826.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:26 Heat of formation + Delta-G solvation = -78.972850 kcal Electronic energy + Delta-G solvation = -12961.339819 eV Core-core repulsion = 10792.847242 eV Total energy + Delta-G solvation = -2168.492578 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.18698 -35.16588 -32.62122 -30.88325 -30.57873 -27.46730 -24.79158 -22.55135 -20.76404 -20.20638 -19.62877 -16.60236 -15.48676 -14.94202 -14.44892 -14.02621 -13.77269 -13.50468 -12.59527 -12.43979 -12.32404 -11.77615 -11.41815 -11.39286 -10.93588 -10.84825 -10.63096 -10.56569 -10.34911 -10.06034 -9.94604 -9.65400 -9.52826 -9.02956 -8.54494 -7.99413 -5.96896 -4.09133 3.34719 3.38912 3.41469 4.45406 5.08081 5.11073 5.28380 5.42379 5.52006 5.66550 5.69223 5.81454 5.92150 6.03902 6.08357 6.10827 6.20172 6.33363 6.37713 6.44350 6.52751 6.70638 6.75911 6.78102 6.87647 6.98094 7.00308 7.56888 7.92668 8.28585 8.61195 9.02766 9.60715 11.10969 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.031361 B = 0.010095 C = 0.008083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.618128 B = 2773.079518 C = 3463.210499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.117 4.117 4 C -0.105 4.105 5 C 0.063 3.937 6 H 0.045 0.955 7 C -0.150 4.150 8 C -0.147 4.147 9 C 0.205 3.795 10 H 0.023 0.977 11 C -0.531 4.531 12 H 0.062 0.938 13 C 0.076 3.924 14 N -0.864 5.864 15 Si 0.892 3.108 16 H -0.286 1.286 17 H -0.276 1.276 18 H -0.276 1.276 19 O -0.345 6.345 20 H 0.051 0.949 21 H 0.047 0.953 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.282 -7.712 -5.782 9.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.154 4.154 4 C -0.143 4.143 5 C 0.004 3.996 6 H 0.063 0.937 7 C -0.188 4.188 8 C -0.185 4.185 9 C 0.150 3.850 10 H 0.040 0.960 11 C -0.568 4.568 12 H 0.080 0.920 13 C -0.129 4.129 14 N -0.500 5.500 15 Si 0.719 3.281 16 H -0.212 1.212 17 H -0.201 1.201 18 H -0.201 1.201 19 O -0.264 6.264 20 H 0.070 0.930 21 H 0.066 0.934 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.095 0.905 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.084 -7.719 -5.616 9.546 hybrid contribution 0.203 0.360 0.748 0.854 sum 0.118 -7.359 -4.868 8.824 Atomic orbital electron populations 1.21767 0.96355 1.00805 1.01949 1.21544 0.95517 0.97766 1.01243 1.21545 0.95442 0.95560 1.02882 1.21568 0.95769 0.95887 1.01078 1.22776 0.92559 0.93179 0.91123 0.93683 1.22957 0.97412 0.99328 0.99090 1.23034 1.01133 0.96199 0.98123 1.20482 0.82561 0.85457 0.96515 0.95970 1.21009 0.95353 1.43141 0.97325 0.91965 1.25081 0.95351 0.94475 0.98010 1.70035 0.99373 1.43954 1.36614 0.86685 0.77201 0.79088 0.85130 1.21194 1.20106 1.20128 1.89494 1.58238 1.43640 1.35058 0.92992 0.93407 0.92563 0.92785 0.92319 0.90513 0.92705 0.92457 0.91793 0.92121 0.92632 0.92962 0.91896 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.53 16 2 C -0.12 -1.69 5.93 -26.73 -0.16 -1.85 16 3 C -0.12 -1.97 5.13 -26.73 -0.14 -2.11 16 4 C -0.11 -1.83 4.86 -26.73 -0.13 -1.96 16 5 C 0.06 1.30 3.27 -25.95 -0.08 1.22 16 6 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 7 C -0.15 -2.83 6.63 -25.16 -0.17 -2.99 16 8 C -0.15 -3.20 6.61 -25.16 -0.17 -3.37 16 9 C 0.21 5.50 3.11 -27.11 -0.08 5.42 16 10 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 11 C -0.53 -15.33 8.78 -34.44 -0.30 -15.63 16 12 H 0.06 1.74 7.59 -52.49 -0.40 1.34 16 13 C 0.08 2.22 5.42 -17.82 -0.10 2.12 16 14 N -0.86 -26.13 12.94 55.43 0.72 -25.41 16 15 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 O -0.35 -9.20 10.22 -35.23 -0.36 -9.56 16 20 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.08 1.55 7.91 -51.93 -0.41 1.14 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.06 1.06 7.88 -51.93 -0.41 0.66 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.37 7.73 -51.93 -0.40 0.97 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 270.79 15.07 4.08 4.08 Total: -1.00 -30.49 270.79 -7.37 -37.86 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -5.83 Total: -3.01 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -0.96 Total: -20.70 kcal Atomic # 7 Polarization: -26.13 SS G_CDS: 0.72 Total: -25.41 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -0.36 Total: -9.56 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.49 -7.37 -37.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308042826.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.116 kcal (2) G-P(sol) polarization free energy of solvation -30.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds