Wall clock time and date at job start Mon Mar 30 2020 02:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47024 * 2 1 4 4 C 1.52999 * 109.47024 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47024 * 180.02562 * 4 3 2 6 6 H 1.09000 * 110.33340 * 304.20192 * 5 4 3 7 7 C 1.54485 * 110.46619 * 181.89189 * 5 4 3 8 8 C 1.54507 * 104.06070 * 217.14292 * 7 5 4 9 9 C 1.54480 * 104.06663 * 359.97438 * 8 7 5 10 10 H 1.08997 * 110.46654 * 265.10532 * 9 8 7 11 11 C 1.50694 * 110.37228 * 142.80965 * 9 8 7 12 12 H 1.08000 * 120.00563 * 3.16730 * 11 9 8 13 13 C 1.37885 * 119.99902 * 183.16894 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 O 1.44420 * 110.37273 * 66.45637 * 5 4 3 20 20 H 1.08994 * 109.47052 * 60.00069 * 1 2 3 21 21 H 1.08998 * 109.46940 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.46917 * 299.99358 * 1 2 3 23 23 H 1.09005 * 109.47087 * 240.00070 * 2 1 3 24 24 H 1.08994 * 109.47497 * 120.00226 * 2 1 3 25 25 H 1.08997 * 109.47254 * 60.00395 * 3 2 1 26 26 H 1.09002 * 109.46817 * 299.99859 * 3 2 1 27 27 H 1.09004 * 109.47221 * 60.00606 * 4 3 2 28 28 H 1.08994 * 109.47497 * 300.00226 * 4 3 2 29 29 H 1.08996 * 110.50781 * 335.78998 * 7 5 4 30 30 H 1.09005 * 110.50976 * 98.36162 * 7 5 4 31 31 H 1.09005 * 110.51114 * 241.35797 * 8 7 5 32 32 H 1.08995 * 110.51057 * 118.64527 * 8 7 5 33 33 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8850 0.0013 6 1 3.6649 3.4339 -0.8440 7 6 5.6238 2.9122 -0.0458 8 6 6.0062 4.1030 0.8613 9 6 4.6482 4.6549 1.3487 10 1 4.3195 5.4758 0.7114 11 6 4.7514 5.1127 2.7808 12 1 5.7013 5.0734 3.2932 13 6 3.6331 5.5816 3.4369 14 7 2.4764 5.6299 2.8129 15 14 3.7609 6.1484 5.2123 16 1 2.4283 6.6038 5.6837 17 1 4.2276 5.0215 6.0593 18 1 4.7285 7.2710 5.3050 19 8 3.7371 3.5389 1.2425 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.6766 1.9563 -0.8900 27 1 3.9337 0.9286 -0.8892 28 1 3.9330 0.9288 0.8908 29 1 6.0343 1.9832 0.3499 30 1 5.9719 3.0787 -1.0653 31 1 6.5433 4.8607 0.2908 32 1 6.6058 3.7628 1.7056 33 1 1.6896 5.9595 3.2747 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308042826.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:25 Heat of formation + Delta-G solvation = -97.199535 kcal Electronic energy + Delta-G solvation = -12962.130187 eV Core-core repulsion = 10792.847242 eV Total energy + Delta-G solvation = -2169.282946 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.97262 -36.51145 -34.69755 -32.61207 -32.16938 -29.21871 -26.55324 -24.13181 -22.32325 -21.71875 -21.29057 -18.74524 -17.05858 -16.67648 -16.33453 -15.63574 -15.53362 -14.69137 -14.18839 -14.14404 -13.81787 -13.54236 -12.97709 -12.82990 -12.70711 -12.42507 -12.24285 -12.01927 -11.94936 -11.78192 -11.39131 -11.32356 -11.07067 -10.98690 -10.70046 -10.00424 -8.16312 -6.36965 1.38875 1.42626 1.50107 2.39759 3.06222 3.66640 3.79798 4.05388 4.15294 4.25100 4.29713 4.37322 4.47983 4.64223 4.70846 4.77230 4.89965 4.98450 4.99963 5.05872 5.14986 5.18954 5.22273 5.31975 5.39556 5.48715 5.53560 5.59552 5.72874 6.16137 6.55626 6.95048 7.38112 8.92066 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.031361 B = 0.010095 C = 0.008083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.618128 B = 2773.079518 C = 3463.210499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.115 4.115 4 C -0.098 4.098 5 C 0.049 3.951 6 H 0.041 0.959 7 C -0.138 4.138 8 C -0.141 4.141 9 C 0.195 3.805 10 H -0.013 1.013 11 C -0.555 4.555 12 H 0.066 0.934 13 C 0.020 3.980 14 N -0.903 5.903 15 Si 0.964 3.036 16 H -0.282 1.282 17 H -0.270 1.270 18 H -0.262 1.262 19 O -0.382 6.382 20 H 0.056 0.944 21 H 0.070 0.930 22 H 0.039 0.961 23 H 0.079 0.921 24 H 0.057 0.943 25 H 0.031 0.969 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.233 -9.095 -6.188 11.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.152 4.152 4 C -0.136 4.136 5 C -0.009 4.009 6 H 0.059 0.941 7 C -0.175 4.175 8 C -0.179 4.179 9 C 0.139 3.861 10 H 0.004 0.996 11 C -0.593 4.593 12 H 0.084 0.916 13 C -0.182 4.182 14 N -0.540 5.540 15 Si 0.788 3.212 16 H -0.207 1.207 17 H -0.195 1.195 18 H -0.187 1.187 19 O -0.302 6.302 20 H 0.075 0.925 21 H 0.089 0.911 22 H 0.058 0.942 23 H 0.097 0.903 24 H 0.076 0.924 25 H 0.049 0.951 26 H 0.075 0.925 27 H 0.115 0.885 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.884 -9.107 -6.031 10.958 hybrid contribution -0.105 0.793 0.797 1.129 sum 0.778 -8.314 -5.234 9.855 Atomic orbital electron populations 1.21773 0.95621 1.02107 1.01409 1.21502 0.96198 0.95374 1.02378 1.21497 0.95508 0.97514 1.00727 1.21570 0.95765 0.93706 1.02531 1.23132 0.94439 0.94641 0.88734 0.94139 1.22920 0.95519 0.98719 1.00393 1.22922 0.98310 0.97799 0.98889 1.20409 0.85288 0.85219 0.95218 0.99554 1.21464 0.95681 1.43471 0.98656 0.91627 1.26014 0.94887 0.94505 1.02823 1.70186 1.00135 1.45110 1.38572 0.85547 0.77543 0.78954 0.79184 1.20733 1.19479 1.18681 1.89414 1.59063 1.43714 1.37988 0.92534 0.91148 0.94200 0.90281 0.92414 0.95055 0.92523 0.88539 0.92483 0.90298 0.89317 0.91234 0.92129 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.91 71.98 0.71 -2.89 16 2 C -0.12 -3.00 5.93 30.59 0.18 -2.82 16 3 C -0.11 -3.85 5.13 30.59 0.16 -3.69 16 4 C -0.10 -3.26 4.86 30.59 0.15 -3.11 16 5 C 0.05 2.01 3.27 31.10 0.10 2.11 16 6 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 7 C -0.14 -4.86 6.63 31.61 0.21 -4.65 16 8 C -0.14 -6.03 6.61 31.61 0.21 -5.82 16 9 C 0.19 10.70 3.11 30.35 0.09 10.79 16 10 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 11 C -0.56 -32.75 8.78 25.60 0.22 -32.53 16 12 H 0.07 3.69 7.59 -2.91 -0.02 3.67 16 13 C 0.02 1.15 5.42 84.66 0.46 1.61 16 14 N -0.90 -56.49 12.94 21.45 0.28 -56.21 16 15 Si 0.96 45.26 29.54 68.60 2.03 47.28 16 16 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 19 O -0.38 -20.95 10.22 -148.98 -1.52 -22.47 16 20 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 21 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 24 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.03 1.31 7.91 -2.39 -0.02 1.29 16 26 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.10 2.46 8.14 -2.38 -0.02 2.45 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.08 2.50 7.88 -2.39 -0.02 2.48 16 30 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 31 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 32 H 0.06 2.58 7.73 -2.39 -0.02 2.56 16 33 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -67.86 270.79 4.32 -63.54 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 1.04 Total: 8.86 kcal Atomic # 6 Polarization: -43.50 SS G_CDS: 2.50 Total: -41.00 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: 0.28 Total: -56.21 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -1.52 Total: -22.47 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -67.86 4.32 -63.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308042826.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.655 kcal (2) G-P(sol) polarization free energy of solvation -67.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds