Wall clock time and date at job start Mon Mar 30 2020 02:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.82328 * 305.69568 * 5 4 3 7 7 C 1.54381 * 109.82728 * 184.81474 * 5 4 3 8 8 C 1.55453 * 102.18357 * 219.17807 * 7 5 4 9 9 C 1.54944 * 100.98730 * 34.04085 * 8 7 5 10 10 H 1.09000 * 110.30943 * 82.52349 * 9 8 7 11 11 C 1.50700 * 110.39212 * 204.64239 * 9 8 7 12 12 H 1.08005 * 120.00006 * 357.21919 * 11 9 8 13 13 C 1.37872 * 120.00174 * 177.21621 * 11 9 8 14 14 N 1.31519 * 119.99920 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00160 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47159 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47125 * 119.99708 * 15 13 11 18 18 H 1.48498 * 109.46956 * 239.99710 * 15 13 11 19 19 O 1.43235 * 109.83322 * 66.58568 * 5 4 3 20 20 H 1.09001 * 109.47289 * 60.00300 * 1 2 3 21 21 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47153 * 300.00216 * 1 2 3 23 23 H 1.09002 * 109.47153 * 239.99783 * 2 1 3 24 24 H 1.09001 * 109.46832 * 119.99974 * 2 1 3 25 25 H 1.09002 * 109.47103 * 59.99753 * 3 2 1 26 26 H 1.08998 * 109.46862 * 300.00565 * 3 2 1 27 27 H 1.09002 * 109.47153 * 59.99783 * 4 3 2 28 28 H 1.09001 * 109.46832 * 299.99974 * 4 3 2 29 29 H 1.08996 * 110.84869 * 337.31952 * 7 5 4 30 30 H 1.09002 * 110.85008 * 100.93607 * 7 5 4 31 31 H 1.08993 * 111.06123 * 276.12096 * 8 7 5 32 32 H 1.09010 * 111.14353 * 151.99479 * 8 7 5 33 33 H 0.97003 * 119.99877 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0013 6 1 3.6395 3.4331 -0.8315 7 6 5.6190 2.8963 -0.1200 8 6 6.0156 4.0489 0.8447 9 6 4.9296 3.9039 1.9404 10 1 5.2132 3.1303 2.6540 11 6 4.7206 5.2170 2.6496 12 1 5.3280 6.0723 2.3926 13 6 3.7539 5.3267 3.6265 14 7 3.0138 4.2854 3.9391 15 14 3.4942 6.9546 4.5051 16 1 4.4462 7.9620 3.9722 17 1 2.1026 7.4219 4.2804 18 1 3.7269 6.7741 5.9606 19 8 3.7367 3.5212 1.2378 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6766 1.9562 -0.8899 27 1 3.9337 0.9284 -0.8891 28 1 3.9329 0.9287 0.8909 29 1 6.0414 1.9486 0.2139 30 1 5.9260 3.1206 -1.1415 31 1 5.9459 5.0167 0.3482 32 1 7.0126 3.8916 1.2564 33 1 2.3339 4.3624 4.6267 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308042992.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:30 Heat of formation + Delta-G solvation = -79.021414 kcal Electronic energy + Delta-G solvation = -12992.165431 eV Core-core repulsion = 10823.670748 eV Total energy + Delta-G solvation = -2168.494683 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.25541 -35.09657 -32.61579 -30.89494 -30.55515 -27.47364 -24.76245 -22.56653 -20.81761 -20.11814 -19.64148 -16.51980 -15.67180 -14.83446 -14.69706 -14.12212 -13.58997 -13.13967 -12.85129 -12.39763 -11.93212 -11.81400 -11.58842 -11.37046 -10.91374 -10.80185 -10.62399 -10.52028 -10.33396 -10.21725 -9.99048 -9.66165 -9.60948 -9.02078 -8.52042 -7.78232 -5.95340 -4.08058 3.32545 3.40232 3.43976 4.46214 5.04791 5.18690 5.31797 5.45515 5.55168 5.57864 5.64953 5.83274 5.94618 6.07053 6.11462 6.11872 6.21235 6.35219 6.39051 6.45025 6.53970 6.68143 6.69911 6.77429 6.84392 7.00689 7.06896 7.65145 7.94078 8.32932 8.71645 9.11377 9.62506 11.12042 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032668 B = 0.010116 C = 0.008048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.905596 B = 2767.111209 C = 3478.392197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.115 4.115 4 C -0.123 4.123 5 C 0.072 3.928 6 H 0.054 0.946 7 C -0.153 4.153 8 C -0.148 4.148 9 C 0.210 3.790 10 H 0.025 0.975 11 C -0.534 4.534 12 H 0.062 0.938 13 C 0.077 3.923 14 N -0.862 5.862 15 Si 0.890 3.110 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.283 1.283 19 O -0.352 6.352 20 H 0.050 0.950 21 H 0.047 0.953 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.077 0.923 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.166 -5.858 -7.259 9.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.152 4.152 4 C -0.160 4.160 5 C 0.013 3.987 6 H 0.072 0.928 7 C -0.191 4.191 8 C -0.186 4.186 9 C 0.155 3.845 10 H 0.042 0.958 11 C -0.572 4.572 12 H 0.080 0.920 13 C -0.128 4.128 14 N -0.498 5.498 15 Si 0.717 3.283 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.209 1.209 19 O -0.271 6.271 20 H 0.069 0.931 21 H 0.066 0.934 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.096 0.904 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.517 -5.896 -7.066 9.217 hybrid contribution 0.013 0.757 0.359 0.838 sum -0.504 -5.139 -6.706 8.464 Atomic orbital electron populations 1.21769 0.96424 1.00785 1.01860 1.21539 0.95439 0.97878 1.01202 1.21516 0.95556 0.95517 1.02631 1.21937 0.95949 0.97378 1.00771 1.22523 0.92851 0.92443 0.90874 0.92788 1.23160 0.96933 0.99486 0.99494 1.23349 1.00225 0.97185 0.97809 1.20496 0.80332 0.95125 0.88555 0.95786 1.21158 1.20211 0.96649 1.19159 0.91981 1.25071 0.95295 0.96288 0.96191 1.70060 1.20635 1.29112 1.30036 0.86594 0.78132 0.84207 0.79347 1.19679 1.20892 1.20941 1.88824 1.32291 1.76653 1.29380 0.93097 0.93434 0.92538 0.92904 0.92280 0.90429 0.92971 0.92948 0.92012 0.91839 0.92139 0.91754 0.92193 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 37.16 0.37 -1.58 16 2 C -0.12 -1.76 5.93 -26.74 -0.16 -1.92 16 3 C -0.11 -1.98 5.13 -26.74 -0.14 -2.11 16 4 C -0.12 -2.18 4.78 -26.73 -0.13 -2.31 16 5 C 0.07 1.49 3.51 -26.01 -0.09 1.40 16 6 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 7 C -0.15 -2.82 6.56 -24.70 -0.16 -2.99 16 8 C -0.15 -3.16 6.54 -24.40 -0.16 -3.32 16 9 C 0.21 5.58 3.27 -26.86 -0.09 5.49 16 10 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 11 C -0.53 -15.37 8.81 -34.44 -0.30 -15.68 16 12 H 0.06 1.73 7.77 -52.48 -0.41 1.33 16 13 C 0.08 2.23 5.42 -17.82 -0.10 2.14 16 14 N -0.86 -26.05 12.93 55.43 0.72 -25.34 16 15 Si 0.89 21.74 29.54 -169.99 -5.02 16.71 16 16 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 O -0.35 -9.33 9.84 -35.23 -0.35 -9.68 16 20 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.08 1.60 7.89 -51.93 -0.41 1.19 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.06 1.10 7.85 -51.93 -0.41 0.69 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 1.37 8.05 -51.93 -0.42 0.96 16 32 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 271.05 15.07 4.08 4.08 Total: -1.00 -30.41 271.05 -7.37 -37.78 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -5.85 Total: -2.68 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -0.96 Total: -20.88 kcal Atomic # 7 Polarization: -26.05 SS G_CDS: 0.72 Total: -25.34 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -0.35 Total: -9.68 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.41 -7.37 -37.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308042992.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.241 kcal (2) G-P(sol) polarization free energy of solvation -30.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds