Wall clock time and date at job start Mon Mar 30 2020 02:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.82328 * 305.69568 * 5 4 3 7 7 C 1.54381 * 109.82728 * 184.81474 * 5 4 3 8 8 C 1.55453 * 102.18357 * 219.17807 * 7 5 4 9 9 C 1.54944 * 100.98730 * 34.04085 * 8 7 5 10 10 H 1.09000 * 110.30943 * 82.52349 * 9 8 7 11 11 C 1.50700 * 110.39212 * 204.64239 * 9 8 7 12 12 H 1.08005 * 120.00006 * 357.21919 * 11 9 8 13 13 C 1.37872 * 120.00174 * 177.21621 * 11 9 8 14 14 N 1.31519 * 119.99920 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00160 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47159 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47125 * 119.99708 * 15 13 11 18 18 H 1.48498 * 109.46956 * 239.99710 * 15 13 11 19 19 O 1.43235 * 109.83322 * 66.58568 * 5 4 3 20 20 H 1.09001 * 109.47289 * 60.00300 * 1 2 3 21 21 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47153 * 300.00216 * 1 2 3 23 23 H 1.09002 * 109.47153 * 239.99783 * 2 1 3 24 24 H 1.09001 * 109.46832 * 119.99974 * 2 1 3 25 25 H 1.09002 * 109.47103 * 59.99753 * 3 2 1 26 26 H 1.08998 * 109.46862 * 300.00565 * 3 2 1 27 27 H 1.09002 * 109.47153 * 59.99783 * 4 3 2 28 28 H 1.09001 * 109.46832 * 299.99974 * 4 3 2 29 29 H 1.08996 * 110.84869 * 337.31952 * 7 5 4 30 30 H 1.09002 * 110.85008 * 100.93607 * 7 5 4 31 31 H 1.08993 * 111.06123 * 276.12096 * 8 7 5 32 32 H 1.09010 * 111.14353 * 151.99479 * 8 7 5 33 33 H 0.97003 * 119.99877 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0013 6 1 3.6395 3.4331 -0.8315 7 6 5.6190 2.8963 -0.1200 8 6 6.0156 4.0489 0.8447 9 6 4.9296 3.9039 1.9404 10 1 5.2132 3.1303 2.6540 11 6 4.7206 5.2170 2.6496 12 1 5.3280 6.0723 2.3926 13 6 3.7539 5.3267 3.6265 14 7 3.0138 4.2854 3.9391 15 14 3.4942 6.9546 4.5051 16 1 4.4462 7.9620 3.9722 17 1 2.1026 7.4219 4.2804 18 1 3.7269 6.7741 5.9606 19 8 3.7367 3.5212 1.2378 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6766 1.9562 -0.8899 27 1 3.9337 0.9284 -0.8891 28 1 3.9329 0.9287 0.8909 29 1 6.0414 1.9486 0.2139 30 1 5.9260 3.1206 -1.1415 31 1 5.9459 5.0167 0.3482 32 1 7.0126 3.8916 1.2564 33 1 2.3339 4.3624 4.6267 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308042992.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:30 Heat of formation + Delta-G solvation = -97.123935 kcal Electronic energy + Delta-G solvation = -12992.950415 eV Core-core repulsion = 10823.670748 eV Total energy + Delta-G solvation = -2169.279668 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.02404 -36.47065 -34.68904 -32.63600 -32.13626 -29.21913 -26.54369 -24.14101 -22.37172 -21.61985 -21.33745 -18.62591 -17.36462 -16.74625 -16.24801 -15.82002 -15.03174 -14.66523 -14.38540 -14.11932 -13.66531 -13.41809 -13.07072 -12.86917 -12.67472 -12.39659 -12.26365 -12.11605 -11.97064 -11.83895 -11.42311 -11.36864 -11.11124 -10.94938 -10.68641 -9.75253 -8.14096 -6.35209 1.38926 1.40228 1.52859 2.40451 3.07015 3.62051 3.87733 3.95050 4.13155 4.24710 4.29711 4.42450 4.49240 4.65396 4.74123 4.75122 4.85809 4.95916 4.99810 5.07506 5.15512 5.16752 5.18991 5.33462 5.39556 5.50344 5.56689 5.65450 5.76565 6.19615 6.62635 7.11547 7.41310 8.93914 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032668 B = 0.010116 C = 0.008048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.905596 B = 2767.111209 C = 3478.392197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.112 4.112 4 C -0.116 4.116 5 C 0.056 3.944 6 H 0.061 0.939 7 C -0.139 4.139 8 C -0.141 4.141 9 C 0.200 3.800 10 H -0.012 1.012 11 C -0.558 4.558 12 H 0.064 0.936 13 C 0.020 3.980 14 N -0.902 5.902 15 Si 0.962 3.038 16 H -0.261 1.261 17 H -0.281 1.281 18 H -0.275 1.275 19 O -0.390 6.390 20 H 0.059 0.941 21 H 0.068 0.932 22 H 0.038 0.962 23 H 0.078 0.922 24 H 0.050 0.950 25 H 0.030 0.970 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.325 -5.992 -8.817 10.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.150 4.150 4 C -0.153 4.153 5 C -0.003 4.003 6 H 0.079 0.921 7 C -0.176 4.176 8 C -0.179 4.179 9 C 0.145 3.855 10 H 0.005 0.995 11 C -0.595 4.595 12 H 0.082 0.918 13 C -0.182 4.182 14 N -0.539 5.539 15 Si 0.787 3.213 16 H -0.185 1.185 17 H -0.207 1.207 18 H -0.200 1.200 19 O -0.310 6.310 20 H 0.078 0.922 21 H 0.087 0.913 22 H 0.057 0.943 23 H 0.097 0.903 24 H 0.069 0.931 25 H 0.049 0.951 26 H 0.080 0.920 27 H 0.109 0.891 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.012 -6.031 -8.637 10.534 hybrid contribution -0.139 0.763 0.798 1.113 sum -0.151 -5.268 -7.838 9.445 Atomic orbital electron populations 1.21765 0.95431 1.02090 1.01478 1.21505 0.96357 0.95697 1.02035 1.21465 0.95428 0.97315 1.00753 1.21888 0.96133 0.95662 1.01642 1.22897 0.94942 0.93714 0.88705 0.92098 1.23129 0.94879 0.98844 1.00762 1.23226 0.99261 0.98559 0.96848 1.20396 0.82261 0.93144 0.89745 0.99457 1.21601 1.20341 0.97673 1.19878 0.91752 1.25994 0.94985 1.00121 0.97087 1.70209 1.21379 1.31492 1.30843 0.85464 0.78053 0.79563 0.78254 1.18483 1.20708 1.20019 1.88737 1.32867 1.77638 1.31744 0.92199 0.91274 0.94263 0.90337 0.93068 0.95142 0.91970 0.89054 0.93847 0.90512 0.88465 0.91807 0.90579 0.93087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.91 71.98 0.71 -2.96 16 2 C -0.12 -3.21 5.93 30.59 0.18 -3.03 16 3 C -0.11 -3.83 5.13 30.59 0.16 -3.67 16 4 C -0.12 -3.98 4.78 30.59 0.15 -3.83 16 5 C 0.06 2.25 3.51 31.06 0.11 2.36 16 6 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 7 C -0.14 -4.77 6.56 31.91 0.21 -4.56 16 8 C -0.14 -5.90 6.54 32.10 0.21 -5.69 16 9 C 0.20 10.91 3.27 30.51 0.10 11.01 16 10 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 11 C -0.56 -32.75 8.81 25.60 0.23 -32.52 16 12 H 0.06 3.63 7.77 -2.91 -0.02 3.60 16 13 C 0.02 1.17 5.42 84.65 0.46 1.63 16 14 N -0.90 -56.43 12.93 21.45 0.28 -56.15 16 15 Si 0.96 45.30 29.54 68.60 2.03 47.32 16 16 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 17 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 18 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 19 O -0.39 -21.25 9.84 -148.98 -1.47 -22.72 16 20 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 21 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 22 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.03 1.30 7.89 -2.39 -0.02 1.28 16 26 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.08 2.44 7.85 -2.39 -0.02 2.42 16 30 H 0.10 2.66 8.14 -2.39 -0.02 2.65 16 31 H 0.06 2.65 8.05 -2.39 -0.02 2.63 16 32 H 0.08 2.88 8.14 -2.38 -0.02 2.86 16 33 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -67.82 271.05 4.39 -63.43 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 1.04 Total: 9.39 kcal Atomic # 6 Polarization: -43.79 SS G_CDS: 2.51 Total: -41.28 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.28 Total: -56.15 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -1.47 Total: -22.72 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -67.82 4.39 -63.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308042992.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.694 kcal (2) G-P(sol) polarization free energy of solvation -67.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds