Wall clock time and date at job start Mon Mar 30 2020 02:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47184 * 2 1 4 4 C 1.53001 * 109.46966 * 182.96171 * 3 2 1 5 5 O 1.42900 * 109.47409 * 60.74346 * 4 3 2 6 6 C 1.50700 * 109.47198 * 300.74191 * 4 3 2 7 7 H 1.07999 * 120.00003 * 299.47266 * 6 4 3 8 8 C 1.37877 * 120.00048 * 119.47172 * 6 4 3 9 9 N 1.31516 * 119.99855 * 161.46428 * 8 6 4 10 10 Si 1.86794 * 120.00137 * 341.46449 * 8 6 4 11 11 H 1.48506 * 109.47102 * 85.81657 * 10 8 6 12 12 H 1.48499 * 109.47618 * 205.81700 * 10 8 6 13 13 H 1.48500 * 109.47180 * 325.82238 * 10 8 6 14 14 C 1.53002 * 109.47175 * 180.74434 * 4 3 2 15 15 C 1.53783 * 113.61597 * 180.02562 * 14 4 3 16 16 C 1.53776 * 87.17305 * 139.93654 * 15 14 4 17 17 C 1.53784 * 113.61152 * 277.49647 * 14 4 3 18 18 H 1.08995 * 109.47089 * 180.02562 * 1 2 3 19 19 H 1.09000 * 109.46620 * 299.99676 * 1 2 3 20 20 H 1.08996 * 109.47199 * 59.99761 * 1 2 3 21 21 H 1.09008 * 109.46852 * 240.00124 * 2 1 3 22 22 H 1.09004 * 109.47187 * 120.00875 * 2 1 3 23 23 H 1.08998 * 109.46776 * 62.96396 * 3 2 1 24 24 H 1.08995 * 109.47434 * 302.96181 * 3 2 1 25 25 H 0.96697 * 114.00260 * 173.38212 * 5 4 3 26 26 H 0.97005 * 119.99861 * 179.97438 * 9 8 6 27 27 H 1.08997 * 112.90957 * 48.74437 * 14 4 3 28 28 H 1.09003 * 113.61122 * 254.52943 * 15 14 4 29 29 H 1.09003 * 113.61468 * 25.34502 * 15 14 4 30 30 H 1.08996 * 113.61330 * 89.15976 * 16 15 14 31 31 H 1.09001 * 113.61442 * 220.06258 * 16 15 14 32 32 H 1.08999 * 113.61301 * 334.56664 * 17 14 4 33 33 H 1.09005 * 113.61349 * 105.38566 * 17 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5682 1.4430 -0.0745 5 8 3.9865 0.8051 -1.2829 6 6 4.1291 0.6960 1.1080 7 1 3.9237 1.0401 2.1109 8 6 4.9045 -0.4267 0.9096 9 7 5.6847 -0.8656 1.8730 10 14 4.8467 -1.3242 -0.7276 11 1 5.8025 -0.6925 -1.6724 12 1 5.2185 -2.7476 -0.5252 13 1 3.4733 -1.2460 -1.2868 14 6 4.0792 2.8851 -0.0558 15 6 5.6113 2.9968 -0.1278 16 6 5.4036 4.1931 -1.0714 17 6 4.0438 3.5690 -1.4328 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3632 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 1.8933 -0.5139 -0.8901 22 1 1.8934 -0.5140 0.8899 23 1 1.7207 1.9407 0.9154 24 1 1.6340 1.9714 -0.8622 25 1 4.9380 0.8581 -1.4466 26 1 6.2299 -1.6557 1.7335 27 1 3.6345 3.4825 0.7400 28 1 6.0746 3.2648 0.8217 29 1 6.0894 2.1416 -0.6056 30 1 5.3220 5.1487 -0.5535 31 1 6.1072 4.2202 -1.9035 32 1 4.0935 2.8709 -2.2684 33 1 3.2404 4.2982 -1.5376 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000323737232.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:32 Heat of formation + Delta-G solvation = -39.256062 kcal Electronic energy + Delta-G solvation = -13788.291368 eV Core-core repulsion = 11621.521039 eV Total energy + Delta-G solvation = -2166.770328 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.11280 -35.71769 -33.45038 -32.11010 -29.19516 -25.55660 -24.77460 -24.29546 -21.22229 -19.55320 -18.47604 -17.20789 -16.01134 -15.20748 -14.54111 -14.05816 -13.87529 -12.89634 -12.51709 -12.38061 -11.88723 -11.79694 -11.56220 -11.27247 -11.23880 -11.04061 -10.58852 -10.30016 -9.93423 -9.85027 -9.78642 -9.60570 -9.12550 -9.02174 -8.20795 -8.05988 -6.06723 -4.05027 3.38090 3.62684 3.83867 4.58469 5.11963 5.30815 5.36890 5.41336 5.48568 5.70313 5.83298 5.88222 6.02379 6.13442 6.33702 6.38889 6.41059 6.44433 6.47096 6.59321 6.69820 6.75590 6.83119 6.95094 7.10152 7.20605 7.39824 7.42759 7.71881 8.25781 8.69633 8.94949 9.59101 11.03297 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.025177 B = 0.019966 C = 0.013895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.862139 B = 1402.022586 C = 2014.574589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.087 4.087 4 C 0.229 3.771 5 O -0.552 6.552 6 C -0.542 4.542 7 H 0.075 0.925 8 C 0.060 3.940 9 N -0.890 5.890 10 Si 0.954 3.046 11 H -0.313 1.313 12 H -0.338 1.338 13 H -0.262 1.262 14 C -0.118 4.118 15 C -0.117 4.117 16 C -0.150 4.150 17 C -0.142 4.142 18 H 0.043 0.957 19 H 0.045 0.955 20 H 0.042 0.958 21 H 0.067 0.933 22 H 0.073 0.927 23 H 0.057 0.943 24 H 0.037 0.963 25 H 0.363 0.637 26 H 0.262 0.738 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.891 5.887 -5.623 9.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.125 4.125 4 C 0.190 3.810 5 O -0.364 6.364 6 C -0.579 4.579 7 H 0.093 0.907 8 C -0.142 4.142 9 N -0.525 5.525 10 Si 0.795 3.205 11 H -0.244 1.244 12 H -0.272 1.272 13 H -0.189 1.189 14 C -0.137 4.137 15 C -0.154 4.154 16 C -0.188 4.188 17 C -0.180 4.180 18 H 0.062 0.938 19 H 0.064 0.936 20 H 0.061 0.939 21 H 0.085 0.915 22 H 0.092 0.908 23 H 0.075 0.925 24 H 0.055 0.945 25 H 0.214 0.786 26 H 0.071 0.929 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.404 5.662 -5.557 9.074 hybrid contribution 0.717 -0.321 -0.605 0.992 sum -3.687 5.341 -6.163 8.950 Atomic orbital electron populations 1.21831 0.98135 1.00263 1.00455 1.21585 0.92725 0.98020 1.03530 1.21476 0.95617 0.96251 0.99176 1.19244 0.91249 0.88007 0.82508 1.86261 1.28549 1.76043 1.45503 1.21106 1.31987 1.11732 0.93075 0.90656 1.25194 0.93494 0.97228 0.98320 1.70062 1.23671 1.23982 1.34781 0.85637 0.78638 0.74702 0.81520 1.24356 1.27211 1.18900 1.23198 0.96204 0.98676 0.95622 1.22650 0.97358 0.96531 0.98864 1.22917 0.97982 0.98215 0.99641 1.23026 0.96313 0.99330 0.99284 0.93824 0.93572 0.93882 0.91469 0.90850 0.92460 0.94452 0.78579 0.92887 0.90124 0.91932 0.90997 0.91143 0.92581 0.89893 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.91 37.16 0.37 -2.12 16 2 C -0.12 -2.51 4.91 -26.73 -0.13 -2.64 16 3 C -0.09 -1.79 4.47 -26.73 -0.12 -1.91 16 4 C 0.23 5.11 0.56 -91.77 -0.05 5.06 16 5 O -0.55 -12.45 6.26 -35.23 -0.22 -12.67 16 6 C -0.54 -14.40 7.01 -34.44 -0.24 -14.64 16 7 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -26.68 13.96 55.43 0.77 -25.90 16 10 Si 0.95 23.87 23.76 -169.99 -4.04 19.83 16 11 H -0.31 -7.49 6.44 56.52 0.36 -7.12 16 12 H -0.34 -8.89 7.11 56.52 0.40 -8.48 16 13 H -0.26 -6.43 4.43 56.52 0.25 -6.17 16 14 C -0.12 -2.32 3.06 -89.80 -0.27 -2.59 16 15 C -0.12 -2.23 6.93 -25.92 -0.18 -2.41 16 16 C -0.15 -2.37 8.09 -25.85 -0.21 -2.58 16 17 C -0.14 -2.40 7.49 -25.85 -0.19 -2.59 16 18 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 19 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 20 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 21 H 0.07 1.49 5.51 -51.92 -0.29 1.21 16 22 H 0.07 1.68 7.30 -51.93 -0.38 1.30 16 23 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.36 8.01 4.57 45.56 0.21 8.22 16 26 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.07 1.46 6.63 -51.93 -0.34 1.12 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.45 6.98 -51.93 -0.36 1.08 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 248.64 15.07 3.75 3.75 Total: -1.00 -28.65 248.64 -6.01 -34.65 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -5.14 Total: 5.18 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: -1.13 Total: -24.83 kcal Atomic # 7 Polarization: -26.68 SS G_CDS: 0.77 Total: -25.90 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -0.22 Total: -12.67 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -4.04 Total: 19.83 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -28.65 -6.01 -34.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323737232.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.604 kcal (2) G-P(sol) polarization free energy of solvation -28.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds