Wall clock time and date at job start Mon Mar 30 2020 02:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47184 * 2 1 4 4 C 1.53001 * 109.46966 * 182.96171 * 3 2 1 5 5 O 1.42900 * 109.47409 * 60.74346 * 4 3 2 6 6 C 1.50700 * 109.47198 * 300.74191 * 4 3 2 7 7 H 1.07999 * 120.00003 * 299.47266 * 6 4 3 8 8 C 1.37877 * 120.00048 * 119.47172 * 6 4 3 9 9 N 1.31516 * 119.99855 * 161.46428 * 8 6 4 10 10 Si 1.86794 * 120.00137 * 341.46449 * 8 6 4 11 11 H 1.48506 * 109.47102 * 85.81657 * 10 8 6 12 12 H 1.48499 * 109.47618 * 205.81700 * 10 8 6 13 13 H 1.48500 * 109.47180 * 325.82238 * 10 8 6 14 14 C 1.53002 * 109.47175 * 180.74434 * 4 3 2 15 15 C 1.53783 * 113.61597 * 180.02562 * 14 4 3 16 16 C 1.53776 * 87.17305 * 139.93654 * 15 14 4 17 17 C 1.53784 * 113.61152 * 277.49647 * 14 4 3 18 18 H 1.08995 * 109.47089 * 180.02562 * 1 2 3 19 19 H 1.09000 * 109.46620 * 299.99676 * 1 2 3 20 20 H 1.08996 * 109.47199 * 59.99761 * 1 2 3 21 21 H 1.09008 * 109.46852 * 240.00124 * 2 1 3 22 22 H 1.09004 * 109.47187 * 120.00875 * 2 1 3 23 23 H 1.08998 * 109.46776 * 62.96396 * 3 2 1 24 24 H 1.08995 * 109.47434 * 302.96181 * 3 2 1 25 25 H 0.96697 * 114.00260 * 173.38212 * 5 4 3 26 26 H 0.97005 * 119.99861 * 179.97438 * 9 8 6 27 27 H 1.08997 * 112.90957 * 48.74437 * 14 4 3 28 28 H 1.09003 * 113.61122 * 254.52943 * 15 14 4 29 29 H 1.09003 * 113.61468 * 25.34502 * 15 14 4 30 30 H 1.08996 * 113.61330 * 89.15976 * 16 15 14 31 31 H 1.09001 * 113.61442 * 220.06258 * 16 15 14 32 32 H 1.08999 * 113.61301 * 334.56664 * 17 14 4 33 33 H 1.09005 * 113.61349 * 105.38566 * 17 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5682 1.4430 -0.0745 5 8 3.9865 0.8051 -1.2829 6 6 4.1291 0.6960 1.1080 7 1 3.9237 1.0401 2.1109 8 6 4.9045 -0.4267 0.9096 9 7 5.6847 -0.8656 1.8730 10 14 4.8467 -1.3242 -0.7276 11 1 5.8025 -0.6925 -1.6724 12 1 5.2185 -2.7476 -0.5252 13 1 3.4733 -1.2460 -1.2868 14 6 4.0792 2.8851 -0.0558 15 6 5.6113 2.9968 -0.1278 16 6 5.4036 4.1931 -1.0714 17 6 4.0438 3.5690 -1.4328 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3632 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 1.8933 -0.5139 -0.8901 22 1 1.8934 -0.5140 0.8899 23 1 1.7207 1.9407 0.9154 24 1 1.6340 1.9714 -0.8622 25 1 4.9380 0.8581 -1.4466 26 1 6.2299 -1.6557 1.7335 27 1 3.6345 3.4825 0.7400 28 1 6.0746 3.2648 0.8217 29 1 6.0894 2.1416 -0.6056 30 1 5.3220 5.1487 -0.5535 31 1 6.1072 4.2202 -1.9035 32 1 4.0935 2.8709 -2.2684 33 1 3.2404 4.2982 -1.5376 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323737232.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:32 Heat of formation + Delta-G solvation = -57.427794 kcal Electronic energy + Delta-G solvation = -13789.079353 eV Core-core repulsion = 11621.521039 eV Total energy + Delta-G solvation = -2167.558314 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.73990 -37.33172 -35.09884 -34.25199 -30.88184 -27.33140 -26.24128 -25.95881 -22.77008 -21.28466 -20.00602 -19.19278 -17.83035 -17.10364 -16.10932 -15.68717 -15.50444 -14.59099 -14.30595 -14.14415 -13.60929 -13.35069 -13.12097 -12.86397 -12.75335 -12.64989 -12.35430 -12.02540 -11.77594 -11.51833 -11.29515 -11.23709 -10.88827 -10.70014 -10.23151 -9.93855 -8.26802 -6.25122 1.34964 1.56922 1.81245 2.47405 3.07026 3.60271 3.90928 3.98556 3.99944 4.21405 4.36001 4.38366 4.54733 4.82890 4.87970 4.94650 4.99450 5.01802 5.06055 5.13983 5.17584 5.22803 5.29007 5.40796 5.54664 5.59865 5.68675 5.77691 5.81765 6.16493 6.68961 6.83872 7.42257 8.87470 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.025177 B = 0.019966 C = 0.013895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.862139 B = 1402.022586 C = 2014.574589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.121 4.121 3 C -0.086 4.086 4 C 0.225 3.775 5 O -0.550 6.550 6 C -0.528 4.528 7 H 0.035 0.965 8 C 0.011 3.989 9 N -0.940 5.940 10 Si 1.006 2.994 11 H -0.293 1.293 12 H -0.357 1.357 13 H -0.253 1.253 14 C -0.127 4.127 15 C -0.130 4.130 16 C -0.129 4.129 17 C -0.129 4.129 18 H 0.053 0.947 19 H 0.055 0.945 20 H 0.061 0.939 21 H 0.051 0.949 22 H 0.039 0.961 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.365 0.635 26 H 0.260 0.740 27 H 0.082 0.918 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.117 7.489 -7.784 11.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.159 4.159 3 C -0.123 4.123 4 C 0.186 3.814 5 O -0.362 6.362 6 C -0.566 4.566 7 H 0.053 0.947 8 C -0.186 4.186 9 N -0.579 5.579 10 Si 0.846 3.154 11 H -0.222 1.222 12 H -0.293 1.293 13 H -0.179 1.179 14 C -0.146 4.146 15 C -0.168 4.168 16 C -0.167 4.167 17 C -0.166 4.166 18 H 0.072 0.928 19 H 0.074 0.926 20 H 0.080 0.920 21 H 0.070 0.930 22 H 0.058 0.942 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.216 0.784 26 H 0.069 0.931 27 H 0.100 0.900 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.644 7.296 -7.736 12.039 hybrid contribution 1.076 -0.782 0.170 1.341 sum -4.568 6.514 -7.567 10.979 Atomic orbital electron populations 1.21752 0.94764 1.01526 1.01901 1.21518 0.95813 0.97520 1.01019 1.21452 0.93948 0.96518 1.00406 1.19281 0.92514 0.88982 0.80643 1.86227 1.28767 1.76142 1.45030 1.21330 1.30766 1.11335 0.93143 0.94698 1.25878 0.93520 0.98115 1.01107 1.70183 1.25713 1.24935 1.37055 0.84708 0.79370 0.72696 0.78601 1.22229 1.29341 1.17935 1.23170 0.96385 0.96951 0.98094 1.22698 0.96824 0.98043 0.99228 1.22840 0.97513 0.97265 0.99055 1.22934 0.97713 0.99281 0.96704 0.92788 0.92558 0.91957 0.93024 0.94225 0.92120 0.91994 0.78367 0.93147 0.89995 0.93440 0.92620 0.89250 0.90725 0.90132 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.34 9.91 71.98 0.71 -3.63 16 2 C -0.12 -4.84 4.91 30.59 0.15 -4.69 16 3 C -0.09 -3.33 4.47 30.59 0.14 -3.20 16 4 C 0.23 9.79 0.56 -11.54 -0.01 9.79 16 5 O -0.55 -23.72 6.26 -148.98 -0.93 -24.65 16 6 C -0.53 -28.70 7.01 25.60 0.18 -28.52 16 7 H 0.03 2.14 8.06 -2.91 -0.02 2.12 16 8 C 0.01 0.64 5.46 84.65 0.46 1.10 16 9 N -0.94 -58.58 13.96 21.45 0.30 -58.28 16 10 Si 1.01 49.57 23.76 68.60 1.63 51.20 16 11 H -0.29 -13.32 6.44 99.48 0.64 -12.68 16 12 H -0.36 -18.72 7.11 99.48 0.71 -18.01 16 13 H -0.25 -11.96 4.43 99.48 0.44 -11.52 16 14 C -0.13 -4.75 3.06 -10.26 -0.03 -4.78 16 15 C -0.13 -4.83 6.93 31.12 0.22 -4.62 16 16 C -0.13 -3.61 8.09 31.17 0.25 -3.36 16 17 C -0.13 -3.85 7.49 31.17 0.23 -3.61 16 18 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 19 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 20 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 21 H 0.05 2.20 5.51 -2.38 -0.01 2.19 16 22 H 0.04 1.82 7.30 -2.38 -0.02 1.80 16 23 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 24 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.37 15.41 4.57 -74.06 -0.34 15.07 16 26 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16 27 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 28 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.06 2.22 6.63 -2.39 -0.02 2.21 16 30 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.08 2.48 6.98 -2.39 -0.02 2.46 16 33 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 Total: -1.00 -62.65 248.64 3.70 -58.95 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.40 Total: 18.30 kcal Atomic # 6 Polarization: -47.83 SS G_CDS: 2.31 Total: -45.52 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: 0.30 Total: -58.28 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.93 Total: -24.65 kcal Atomic # 14 Polarization: 49.57 SS G_CDS: 1.63 Total: 51.20 kcal Total: -62.65 3.70 -58.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323737232.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.524 kcal (2) G-P(sol) polarization free energy of solvation -62.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds