Wall clock time and date at job start Mon Mar 30 2020 02:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47649 * 2 1 4 4 C 1.53008 * 109.47258 * 180.02562 * 3 2 1 5 5 O 1.42894 * 109.46950 * 65.00042 * 4 3 2 6 6 C 1.50705 * 109.46982 * 185.00408 * 4 3 2 7 7 H 1.08000 * 119.99788 * 119.99993 * 6 4 3 8 8 C 1.37881 * 119.99581 * 299.99775 * 6 4 3 9 9 N 1.31518 * 119.99677 * 180.02562 * 8 6 4 10 10 Si 1.86797 * 120.00389 * 0.02562 * 8 6 4 11 11 H 1.48500 * 109.47291 * 89.99753 * 10 8 6 12 12 H 1.48497 * 109.47179 * 209.99973 * 10 8 6 13 13 H 1.48506 * 109.47019 * 329.99853 * 10 8 6 14 14 C 1.53000 * 109.46748 * 304.99997 * 4 3 2 15 15 C 1.53787 * 113.60890 * 185.00040 * 14 4 3 16 16 C 1.53784 * 87.07923 * 139.98364 * 15 14 4 17 17 C 1.53779 * 87.08045 * 334.56667 * 16 15 14 18 18 H 1.09002 * 109.46771 * 300.00255 * 1 2 3 19 19 H 1.09002 * 109.46980 * 59.99147 * 1 2 3 20 20 H 1.08994 * 109.47339 * 180.02562 * 1 2 3 21 21 H 1.09011 * 109.46675 * 239.99991 * 2 1 3 22 22 H 1.09006 * 109.47456 * 120.00811 * 2 1 3 23 23 H 1.08998 * 109.46798 * 60.00217 * 3 2 1 24 24 H 1.08997 * 109.47202 * 300.00310 * 3 2 1 25 25 H 0.96702 * 113.99983 * 179.97438 * 5 4 3 26 26 H 0.96999 * 119.99947 * 180.02562 * 9 8 6 27 27 H 1.09000 * 112.90915 * 53.75146 * 14 4 3 28 28 H 1.09004 * 113.61202 * 254.53117 * 15 14 4 29 29 H 1.08994 * 113.61447 * 25.43549 * 15 14 4 30 30 H 1.09002 * 113.61478 * 89.11632 * 16 15 14 31 31 H 1.09004 * 113.61162 * 220.01809 * 16 15 14 32 32 H 1.09006 * 113.61307 * 270.88660 * 17 16 15 33 33 H 1.08999 * 113.69146 * 139.99146 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5702 1.4423 -0.0006 5 8 4.0459 0.8731 -1.2219 6 6 4.0726 2.8577 0.1233 7 1 4.6939 3.1387 0.9608 8 6 3.7392 3.7937 -0.8326 9 7 4.1781 5.0288 -0.7247 10 14 2.6641 3.3077 -2.2808 11 1 1.2366 3.5208 -1.9312 12 1 3.0147 4.1406 -3.4591 13 1 2.8862 1.8752 -2.6034 14 6 4.0805 0.6147 1.1807 15 6 5.6094 0.6504 1.3429 16 6 5.3677 0.7316 2.8595 17 6 3.9990 1.3499 2.5289 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5140 -0.8899 20 1 -0.3634 -1.0276 0.0005 21 1 1.8933 -0.5139 -0.8901 22 1 1.8934 -0.5140 0.8899 23 1 1.6768 1.9562 0.8900 24 1 1.6768 1.9563 -0.8899 25 1 5.0098 0.8411 -1.2917 26 1 3.9432 5.6874 -1.3970 27 1 3.6621 -0.3915 1.2060 28 1 6.1035 -0.2688 1.0281 29 1 6.0719 1.5450 0.9260 30 1 5.3012 -0.2426 3.3438 31 1 6.0432 1.4157 3.3732 32 1 4.0214 2.4357 2.4361 33 1 3.1922 0.9964 3.1708 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323737234.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:33 Heat of formation + Delta-G solvation = -57.013645 kcal Electronic energy + Delta-G solvation = -13748.397601 eV Core-core repulsion = 11580.857246 eV Total energy + Delta-G solvation = -2167.540355 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.56988 -37.13071 -34.97734 -34.35385 -30.66692 -27.03166 -26.40406 -26.06185 -22.70930 -21.50993 -20.26235 -18.91909 -16.97986 -16.72805 -16.28402 -15.48909 -15.27937 -15.11562 -14.25946 -14.02225 -13.45995 -13.44267 -13.11669 -13.03697 -12.75631 -12.37900 -12.34727 -12.06094 -11.74776 -11.50736 -11.28222 -11.05084 -10.92087 -10.66513 -10.30044 -9.78206 -8.27735 -6.35399 1.34450 1.43704 1.70767 2.43636 3.09747 3.79467 3.97419 4.01336 4.14682 4.19557 4.29116 4.34188 4.55713 4.68407 4.83127 4.94588 4.99244 5.06569 5.10674 5.12747 5.17227 5.21655 5.28835 5.42480 5.51316 5.59929 5.68741 5.78897 5.91924 6.26554 6.76627 7.28977 7.46882 8.85986 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.025883 B = 0.019439 C = 0.013277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.516773 B = 1440.059793 C = 2108.358227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.106 4.106 4 C 0.226 3.774 5 O -0.582 6.582 6 C -0.529 4.529 7 H 0.054 0.946 8 C 0.028 3.972 9 N -0.945 5.945 10 Si 0.929 3.071 11 H -0.292 1.292 12 H -0.320 1.320 13 H -0.205 1.205 14 C -0.120 4.120 15 C -0.133 4.133 16 C -0.131 4.131 17 C -0.133 4.133 18 H 0.056 0.944 19 H 0.040 0.960 20 H 0.072 0.928 21 H 0.056 0.944 22 H 0.075 0.925 23 H 0.060 0.940 24 H 0.030 0.970 25 H 0.366 0.634 26 H 0.260 0.740 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.598 -11.605 3.630 12.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.143 4.143 4 C 0.186 3.814 5 O -0.389 6.389 6 C -0.567 4.567 7 H 0.072 0.928 8 C -0.170 4.170 9 N -0.585 5.585 10 Si 0.759 3.241 11 H -0.220 1.220 12 H -0.250 1.250 13 H -0.127 1.127 14 C -0.138 4.138 15 C -0.170 4.170 16 C -0.168 4.168 17 C -0.171 4.171 18 H 0.075 0.925 19 H 0.059 0.941 20 H 0.091 0.909 21 H 0.075 0.925 22 H 0.093 0.907 23 H 0.078 0.922 24 H 0.049 0.951 25 H 0.213 0.787 26 H 0.069 0.931 27 H 0.112 0.888 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.234 -11.530 3.460 12.464 hybrid contribution 0.208 0.965 -0.678 1.197 sum -3.025 -10.565 2.782 11.336 Atomic orbital electron populations 1.21801 0.95412 1.02215 1.01343 1.21559 0.95973 0.95859 1.02160 1.21766 0.95546 0.97172 0.99840 1.19001 0.90815 0.89599 0.81938 1.86504 1.25952 1.84993 1.41429 1.21889 1.31242 0.94688 1.08848 0.92797 1.25696 0.96468 0.94440 1.00424 1.70075 1.47522 1.04183 1.36765 0.86341 0.77753 0.81323 0.78695 1.22031 1.25018 1.12703 1.23023 0.96597 0.98844 0.95358 1.22805 0.96096 1.01296 0.96812 1.22772 0.96877 1.01109 0.96057 1.22885 0.97624 1.00107 0.96452 0.92508 0.94080 0.90915 0.92539 0.90683 0.92160 0.95145 0.78695 0.93079 0.88784 0.90884 0.91858 0.88596 0.92327 0.91706 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.20 9.91 71.98 0.71 -3.49 16 2 C -0.12 -3.91 5.40 30.59 0.17 -3.75 16 3 C -0.11 -4.43 3.90 30.59 0.12 -4.31 16 4 C 0.23 9.83 0.29 -11.54 0.00 9.82 16 5 O -0.58 -25.05 9.36 -148.98 -1.39 -26.45 16 6 C -0.53 -28.37 7.08 25.60 0.18 -28.19 16 7 H 0.05 3.15 5.63 -2.91 -0.02 3.14 16 8 C 0.03 1.61 5.45 84.66 0.46 2.07 16 9 N -0.94 -59.07 13.96 21.45 0.30 -58.77 16 10 Si 0.93 46.94 23.86 68.60 1.64 48.57 16 11 H -0.29 -14.63 6.92 99.48 0.69 -13.94 16 12 H -0.32 -16.63 7.11 99.48 0.71 -15.92 16 13 H -0.20 -9.81 5.30 99.48 0.53 -9.28 16 14 C -0.12 -4.32 2.85 -10.27 -0.03 -4.35 16 15 C -0.13 -4.48 6.82 31.12 0.21 -4.27 16 16 C -0.13 -3.93 8.08 31.12 0.25 -3.68 16 17 C -0.13 -4.73 7.24 31.12 0.23 -4.50 16 18 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 19 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 20 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 21 H 0.06 1.94 7.82 -2.38 -0.02 1.92 16 22 H 0.07 2.23 6.24 -2.38 -0.01 2.21 16 23 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 24 H 0.03 1.39 3.41 -2.39 -0.01 1.38 16 25 H 0.37 14.24 8.51 -74.06 -0.63 13.61 16 26 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 27 H 0.09 3.03 6.25 -2.39 -0.01 3.01 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 29 H 0.06 2.54 6.79 -2.39 -0.02 2.52 16 30 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 2.80 5.87 -2.38 -0.01 2.79 16 33 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -63.12 247.46 3.10 -60.01 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.26 Total: 21.28 kcal Atomic # 6 Polarization: -46.94 SS G_CDS: 2.30 Total: -44.65 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: 0.30 Total: -58.77 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -1.39 Total: -26.45 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.64 Total: 48.57 kcal Total: -63.12 3.10 -60.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323737234.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.000 kcal (2) G-P(sol) polarization free energy of solvation -63.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds