Wall clock time and date at job start Mon Mar 30 2020 02:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46822 * 2 1 4 4 C 1.52996 * 109.47305 * 240.00221 * 2 1 3 5 5 O 1.42901 * 109.47091 * 65.00095 * 4 2 1 6 6 C 1.42905 * 114.00134 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.47264 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99574 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99789 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99734 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00111 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47123 * 89.99915 * 11 9 7 13 13 H 1.48498 * 109.47161 * 209.99603 * 11 9 7 14 14 H 1.48497 * 109.47329 * 329.99749 * 11 9 7 15 15 C 1.52995 * 109.47096 * 120.00065 * 2 1 3 16 16 C 1.53787 * 113.61422 * 279.13865 * 15 2 1 17 17 C 1.53954 * 87.02047 * 220.04677 * 16 15 2 18 18 C 1.53785 * 113.61477 * 181.53120 * 15 2 1 19 19 H 1.09001 * 109.47181 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47447 * 300.00015 * 1 2 3 21 21 H 1.09001 * 109.47314 * 59.99971 * 1 2 3 22 22 H 1.08994 * 109.47303 * 305.00108 * 4 2 1 23 23 H 1.09002 * 109.47060 * 184.99638 * 4 2 1 24 24 H 1.09001 * 109.47103 * 300.00246 * 6 5 4 25 25 H 1.09004 * 109.47054 * 59.99750 * 6 5 4 26 26 H 0.97007 * 120.00011 * 180.02562 * 10 9 7 27 27 H 1.09002 * 112.84762 * 50.33508 * 15 2 1 28 28 H 1.08997 * 113.61489 * 334.57157 * 16 15 2 29 29 H 1.09000 * 113.61308 * 105.46967 * 16 15 2 30 30 H 1.08995 * 113.54015 * 270.81607 * 17 16 15 31 31 H 1.08993 * 113.74523 * 139.94062 * 17 16 15 32 32 H 1.08994 * 113.61450 * 254.52797 * 18 15 2 33 33 H 1.08996 * 113.61008 * 25.43415 * 18 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.6620 0.0169 -2.4130 6 6 2.0924 -0.5737 -3.6411 7 6 1.6412 0.2832 -4.7958 8 1 1.0814 1.1879 -4.6104 9 6 1.9432 -0.0881 -6.0889 10 7 1.5490 0.6594 -7.0966 11 14 2.9109 -1.6534 -6.4094 12 1 1.9715 -2.7929 -6.5656 13 1 3.7091 -1.4962 -7.6518 14 1 3.8213 -1.9155 -5.2660 15 6 2.0400 -0.7212 1.2492 16 6 2.0343 0.1559 2.5124 17 6 3.3855 -0.4899 2.8694 18 6 3.5733 -0.7443 1.3644 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 1.6054 -1.7197 -1.2952 23 1 3.1264 -0.7993 -1.2056 24 1 3.1799 -0.6485 -3.6468 25 1 1.6593 -1.5693 -3.7369 26 1 1.7611 0.3980 -8.0064 27 1 1.5765 -1.6973 1.3932 28 1 2.1023 1.2234 2.3030 29 1 1.2341 -0.0894 3.2106 30 1 3.2899 -1.4025 3.4578 31 1 4.1093 0.2094 3.2877 32 1 4.0137 -1.7151 1.1373 33 1 4.0628 0.0767 0.8406 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398497118.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:39 Heat of formation + Delta-G solvation = -49.418941 kcal Electronic energy + Delta-G solvation = -12643.459782 eV Core-core repulsion = 10476.248758 eV Total energy + Delta-G solvation = -2167.211024 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.24555 -36.78037 -33.21859 -32.30802 -28.12717 -26.45925 -25.27474 -24.44028 -21.77924 -20.37167 -19.37918 -16.85335 -15.73741 -15.52236 -15.03255 -14.48049 -14.37879 -13.61108 -12.99517 -12.58230 -12.45518 -12.36112 -11.80448 -11.73400 -11.65744 -11.02301 -10.91196 -10.67175 -10.55656 -10.39445 -9.97213 -9.86595 -9.79861 -9.15751 -8.81109 -8.43725 -6.10587 -4.09395 3.25416 3.32256 3.34266 4.36460 4.42799 4.63695 4.69059 4.81348 5.05399 5.20901 5.29492 5.49614 5.62986 5.67109 5.75481 5.76932 5.84538 5.91217 5.95025 6.07211 6.10212 6.30312 6.31841 6.41956 6.59869 6.63760 6.72813 7.02526 7.61641 8.06133 8.69563 9.01032 9.49070 11.02517 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.060327 B = 0.006884 C = 0.006452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.026835 B = 4066.653357 C = 4338.829132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.079 4.079 3 H 0.076 0.924 4 C 0.065 3.935 5 O -0.381 6.381 6 C 0.169 3.831 7 C -0.519 4.519 8 H 0.082 0.918 9 C 0.072 3.928 10 N -0.896 5.896 11 Si 0.876 3.124 12 H -0.274 1.274 13 H -0.282 1.282 14 H -0.266 1.266 15 C -0.104 4.104 16 C -0.134 4.134 17 C -0.144 4.144 18 C -0.140 4.140 19 H 0.048 0.952 20 H 0.047 0.953 21 H 0.067 0.933 22 H 0.035 0.965 23 H 0.037 0.963 24 H 0.002 0.998 25 H -0.003 1.003 26 H 0.266 0.734 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.498 -4.249 17.345 18.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.097 4.097 3 H 0.094 0.906 4 C -0.013 4.013 5 O -0.300 6.300 6 C 0.094 3.906 7 C -0.556 4.556 8 H 0.100 0.900 9 C -0.130 4.130 10 N -0.535 5.535 11 Si 0.702 3.298 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.191 1.191 15 C -0.122 4.122 16 C -0.171 4.171 17 C -0.181 4.181 18 C -0.177 4.177 19 H 0.067 0.933 20 H 0.066 0.934 21 H 0.086 0.914 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.019 0.981 25 H 0.015 0.985 26 H 0.076 0.924 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.396 -4.059 17.139 17.775 hybrid contribution 0.673 -1.135 -0.384 1.374 sum 3.068 -5.194 16.755 17.808 Atomic orbital electron populations 1.21714 0.94804 1.01435 1.01806 1.21085 0.96474 0.99816 0.92353 0.90567 1.22334 0.97600 0.94544 0.86828 1.87886 1.78620 1.49826 1.13651 1.20581 0.93684 0.93775 0.82584 1.20909 1.36068 1.10231 0.88436 0.89975 1.24766 0.95576 0.96940 0.95686 1.69879 1.46330 1.38272 0.98975 0.86851 0.80734 0.83967 0.78224 1.19925 1.20756 1.19110 1.22551 0.95952 0.99271 0.94434 1.22956 0.97245 0.99623 0.97282 1.22843 0.97807 1.00694 0.96760 1.22961 0.96511 1.02116 0.96133 0.93298 0.93390 0.91386 0.94688 0.94468 0.98052 0.98512 0.92383 0.89435 0.90043 0.91787 0.90555 0.91723 0.91703 0.89858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.07 37.16 0.34 -1.71 16 2 C -0.08 -1.18 2.35 -90.63 -0.21 -1.39 16 3 H 0.08 1.19 7.98 -51.93 -0.41 0.78 16 4 C 0.06 1.18 5.22 37.16 0.19 1.38 16 5 O -0.38 -9.12 9.86 -35.23 -0.35 -9.47 16 6 C 0.17 4.42 4.76 36.01 0.17 4.59 16 7 C -0.52 -15.72 9.99 -34.44 -0.34 -16.07 16 8 H 0.08 2.71 8.06 -52.49 -0.42 2.29 16 9 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 10 N -0.90 -27.96 13.96 55.43 0.77 -27.18 16 11 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 15 C -0.10 -1.24 3.11 -89.80 -0.28 -1.51 16 16 C -0.13 -1.37 7.63 -25.82 -0.20 -1.57 16 17 C -0.14 -1.37 8.09 -25.82 -0.21 -1.58 16 18 C -0.14 -1.58 6.66 -25.91 -0.17 -1.75 16 19 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 20 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.07 1.15 7.82 -51.93 -0.41 0.75 16 22 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.04 0.65 7.33 -51.93 -0.38 0.27 16 24 H 0.00 0.05 7.20 -51.93 -0.37 -0.33 16 25 H 0.00 -0.07 7.57 -51.93 -0.39 -0.46 16 26 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 27 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.08 0.85 7.99 -51.93 -0.41 0.43 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 269.87 15.07 4.07 4.07 Total: -1.00 -31.28 269.87 -6.76 -38.04 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: -5.78 Total: -4.94 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -0.81 Total: -17.56 kcal Atomic # 7 Polarization: -27.96 SS G_CDS: 0.77 Total: -27.18 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.35 Total: -9.47 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.28 -6.76 -38.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398497118.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.382 kcal (2) G-P(sol) polarization free energy of solvation -31.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds