Wall clock time and date at job start Mon Mar 30 2020 02:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46822 * 2 1 4 4 C 1.52996 * 109.47305 * 240.00221 * 2 1 3 5 5 O 1.42901 * 109.47091 * 65.00095 * 4 2 1 6 6 C 1.42905 * 114.00134 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.47264 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99574 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99789 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99734 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00111 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47123 * 89.99915 * 11 9 7 13 13 H 1.48498 * 109.47161 * 209.99603 * 11 9 7 14 14 H 1.48497 * 109.47329 * 329.99749 * 11 9 7 15 15 C 1.52995 * 109.47096 * 120.00065 * 2 1 3 16 16 C 1.53787 * 113.61422 * 279.13865 * 15 2 1 17 17 C 1.53954 * 87.02047 * 220.04677 * 16 15 2 18 18 C 1.53785 * 113.61477 * 181.53120 * 15 2 1 19 19 H 1.09001 * 109.47181 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47447 * 300.00015 * 1 2 3 21 21 H 1.09001 * 109.47314 * 59.99971 * 1 2 3 22 22 H 1.08994 * 109.47303 * 305.00108 * 4 2 1 23 23 H 1.09002 * 109.47060 * 184.99638 * 4 2 1 24 24 H 1.09001 * 109.47103 * 300.00246 * 6 5 4 25 25 H 1.09004 * 109.47054 * 59.99750 * 6 5 4 26 26 H 0.97007 * 120.00011 * 180.02562 * 10 9 7 27 27 H 1.09002 * 112.84762 * 50.33508 * 15 2 1 28 28 H 1.08997 * 113.61489 * 334.57157 * 16 15 2 29 29 H 1.09000 * 113.61308 * 105.46967 * 16 15 2 30 30 H 1.08995 * 113.54015 * 270.81607 * 17 16 15 31 31 H 1.08993 * 113.74523 * 139.94062 * 17 16 15 32 32 H 1.08994 * 113.61450 * 254.52797 * 18 15 2 33 33 H 1.08996 * 113.61008 * 25.43415 * 18 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.6620 0.0169 -2.4130 6 6 2.0924 -0.5737 -3.6411 7 6 1.6412 0.2832 -4.7958 8 1 1.0814 1.1879 -4.6104 9 6 1.9432 -0.0881 -6.0889 10 7 1.5490 0.6594 -7.0966 11 14 2.9109 -1.6534 -6.4094 12 1 1.9715 -2.7929 -6.5656 13 1 3.7091 -1.4962 -7.6518 14 1 3.8213 -1.9155 -5.2660 15 6 2.0400 -0.7212 1.2492 16 6 2.0343 0.1559 2.5124 17 6 3.3855 -0.4899 2.8694 18 6 3.5733 -0.7443 1.3644 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 1.6054 -1.7197 -1.2952 23 1 3.1264 -0.7993 -1.2056 24 1 3.1799 -0.6485 -3.6468 25 1 1.6593 -1.5693 -3.7369 26 1 1.7611 0.3980 -8.0064 27 1 1.5765 -1.6973 1.3932 28 1 2.1023 1.2234 2.3030 29 1 1.2341 -0.0894 3.2106 30 1 3.2899 -1.4025 3.4578 31 1 4.1093 0.2094 3.2877 32 1 4.0137 -1.7151 1.1373 33 1 4.0628 0.0767 0.8406 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398497118.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:39 Heat of formation + Delta-G solvation = -68.797004 kcal Electronic energy + Delta-G solvation = -12644.300078 eV Core-core repulsion = 10476.248758 eV Total energy + Delta-G solvation = -2168.051320 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.25205 -38.45482 -35.05884 -34.01598 -30.21631 -27.66873 -26.17291 -25.64962 -23.91261 -21.52968 -20.29494 -19.07431 -17.43533 -16.78008 -16.45563 -16.21563 -15.60321 -15.15823 -14.68494 -14.30876 -13.48989 -13.34234 -13.29231 -13.20094 -12.99145 -12.69091 -12.55320 -11.96299 -11.87562 -11.71418 -11.41195 -11.30601 -10.97776 -10.91385 -10.86341 -10.35654 -8.39720 -6.48078 1.31340 1.34602 1.45694 2.27527 2.92630 3.01244 3.71905 3.77302 3.91829 4.02598 4.11681 4.39394 4.42284 4.53031 4.57204 4.71630 4.79527 4.92623 4.93451 4.93998 4.98290 5.05582 5.12442 5.17212 5.28602 5.37735 5.43588 5.47095 5.70181 5.92798 6.55867 6.73902 7.16759 8.77519 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.060327 B = 0.006884 C = 0.006452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.026835 B = 4066.653357 C = 4338.829132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.075 4.075 3 H 0.063 0.937 4 C 0.056 3.944 5 O -0.407 6.407 6 C 0.179 3.821 7 C -0.548 4.548 8 H 0.029 0.971 9 C 0.014 3.986 10 N -0.941 5.941 11 Si 0.956 3.044 12 H -0.258 1.258 13 H -0.271 1.271 14 H -0.247 1.247 15 C -0.103 4.103 16 C -0.131 4.131 17 C -0.133 4.133 18 C -0.147 4.147 19 H 0.057 0.943 20 H 0.071 0.929 21 H 0.033 0.967 22 H 0.046 0.954 23 H 0.046 0.954 24 H 0.010 0.990 25 H 0.010 0.990 26 H 0.274 0.726 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.612 -6.437 18.941 20.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.093 4.093 3 H 0.082 0.918 4 C -0.021 4.021 5 O -0.327 6.327 6 C 0.104 3.896 7 C -0.586 4.586 8 H 0.048 0.952 9 C -0.184 4.184 10 N -0.581 5.581 11 Si 0.777 3.223 12 H -0.183 1.183 13 H -0.196 1.196 14 H -0.171 1.171 15 C -0.121 4.121 16 C -0.168 4.168 17 C -0.171 4.171 18 C -0.184 4.184 19 H 0.076 0.924 20 H 0.090 0.910 21 H 0.053 0.947 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.028 0.972 25 H 0.027 0.973 26 H 0.083 0.917 27 H 0.117 0.883 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.503 -6.237 18.762 20.080 hybrid contribution 0.262 -0.349 -0.857 0.962 sum 3.765 -6.586 17.905 19.446 Atomic orbital electron populations 1.21686 0.94634 1.01873 1.01299 1.21101 0.96632 0.99259 0.92356 0.91818 1.22691 0.98468 0.95034 0.85868 1.87854 1.79073 1.51224 1.14528 1.20308 0.93872 0.93154 0.82308 1.21172 1.36708 1.09655 0.91075 0.95223 1.25847 0.96420 1.01302 0.94852 1.70032 1.47496 1.40702 0.99828 0.85604 0.79363 0.78398 0.78973 1.18253 1.19555 1.17054 1.22573 0.96407 0.99768 0.93351 1.22951 0.98303 0.99120 0.96442 1.22818 0.97309 1.01388 0.95548 1.22994 0.95823 1.01969 0.97623 0.92366 0.91031 0.94733 0.93619 0.93559 0.97191 0.97265 0.91707 0.88339 0.90515 0.90370 0.89086 0.90978 0.91239 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.07 71.98 0.65 -3.26 16 2 C -0.07 -2.18 2.35 -10.80 -0.03 -2.20 16 3 H 0.06 1.99 7.98 -2.39 -0.02 1.97 16 4 C 0.06 2.00 5.22 71.98 0.38 2.38 16 5 O -0.41 -19.78 9.86 -148.98 -1.47 -21.25 16 6 C 0.18 9.35 4.76 71.24 0.34 9.68 16 7 C -0.55 -34.34 9.99 25.60 0.26 -34.08 16 8 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 9 C 0.01 0.84 5.47 84.65 0.46 1.30 16 10 N -0.94 -60.03 13.96 21.45 0.30 -59.73 16 11 Si 0.96 44.01 27.47 68.60 1.88 45.89 16 12 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 13 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 14 H -0.25 -10.55 6.54 99.48 0.65 -9.90 16 15 C -0.10 -2.21 3.11 -10.27 -0.03 -2.24 16 16 C -0.13 -2.33 7.63 31.18 0.24 -2.09 16 17 C -0.13 -2.14 8.09 31.18 0.25 -1.89 16 18 C -0.15 -2.98 6.66 31.12 0.21 -2.78 16 19 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 20 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 21 H 0.03 1.19 7.82 -2.39 -0.02 1.17 16 22 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.05 1.56 7.33 -2.39 -0.02 1.54 16 24 H 0.01 0.52 7.20 -2.39 -0.02 0.50 16 25 H 0.01 0.47 7.57 -2.38 -0.02 0.46 16 26 H 0.27 15.95 8.31 -92.70 -0.77 15.18 16 27 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.08 1.45 7.99 -2.39 -0.02 1.43 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 1.61 8.10 -2.39 -0.02 1.59 16 Total: -1.00 -69.07 269.87 4.43 -64.64 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: 0.99 Total: 5.63 kcal Atomic # 6 Polarization: -37.91 SS G_CDS: 2.73 Total: -35.18 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: 0.30 Total: -59.73 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -1.47 Total: -21.25 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.89 kcal Total: -69.07 4.43 -64.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398497118.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.156 kcal (2) G-P(sol) polarization free energy of solvation -69.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds