Wall clock time and date at job start Mon Mar 30 2020 02:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86791 * 120.00116 * 2 1 4 4 H 1.48493 * 109.47338 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47019 * 300.00056 * 3 2 1 6 6 H 1.48496 * 109.47366 * 59.99874 * 3 2 1 7 7 C 1.38809 * 119.99797 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00529 * 160.67764 * 7 2 1 9 9 N 1.36940 * 120.00451 * 340.67474 * 7 2 1 10 10 C 1.47138 * 120.18174 * 336.40503 * 9 7 2 11 11 C 1.53618 * 107.51766 * 107.87744 * 10 9 7 12 12 C 1.53490 * 108.46533 * 69.77913 * 11 10 9 13 13 C 1.52472 * 109.14645 * 245.78144 * 12 11 10 14 14 C 1.53115 * 109.67099 * 43.93070 * 13 12 11 15 15 C 1.53433 * 109.35191 * 77.03297 * 14 13 12 16 16 H 1.09000 * 109.63137 * 47.35136 * 15 14 13 17 17 N 1.46894 * 109.63552 * 167.74698 * 15 14 13 18 18 C 1.46063 * 120.18903 * 156.42057 * 9 7 2 19 19 H 0.96998 * 120.00165 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.84927 * 348.36986 * 10 9 7 21 21 H 1.09003 * 109.84719 * 227.37827 * 10 9 7 22 22 H 1.08999 * 109.64235 * 310.08460 * 11 10 9 23 23 H 1.09004 * 109.80798 * 189.56552 * 11 10 9 24 24 H 1.08995 * 109.52813 * 125.88467 * 12 11 10 25 25 H 1.08999 * 109.58086 * 5.71279 * 12 11 10 26 26 H 1.09002 * 109.44232 * 283.86348 * 13 12 11 27 27 H 1.08999 * 109.40250 * 163.96807 * 13 12 11 28 28 H 1.08996 * 109.49047 * 317.06655 * 14 13 12 29 29 H 1.09006 * 109.51145 * 197.00747 * 14 13 12 30 30 H 1.00903 * 111.00407 * 179.60357 * 17 15 14 31 31 H 1.00899 * 111.00067 * 303.56090 * 17 15 14 32 32 H 1.08996 * 109.35717 * 172.83136 * 18 9 7 33 33 H 1.09002 * 109.35505 * 53.23968 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8914 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0446 -1.2285 -0.3100 9 7 1.3834 -2.3549 0.3914 10 6 0.2097 -2.2945 1.2767 11 6 -1.0244 -2.6482 0.4332 12 6 -0.9555 -4.1384 0.0719 13 6 -0.7792 -4.2797 -1.4360 14 6 0.2664 -3.2756 -1.9290 15 6 1.6693 -3.7899 -1.5805 16 1 1.7569 -4.8378 -1.8675 17 7 2.6777 -2.9964 -2.2954 18 6 1.8764 -3.6512 -0.0668 19 1 -0.4850 0.8400 0.0004 20 1 0.1043 -1.2887 1.6834 21 1 0.3213 -3.0130 2.0887 22 1 -1.0291 -2.0501 -0.4781 23 1 -1.9314 -2.4515 1.0050 24 1 -1.8784 -4.6306 0.3784 25 1 -0.1099 -4.5993 0.5823 26 1 -1.7302 -4.0863 -1.9322 27 1 -0.4480 -5.2918 -1.6685 28 1 0.1017 -2.3124 -1.4460 29 1 0.1793 -3.1603 -3.0094 30 1 3.6100 -3.3137 -2.0757 31 1 2.5142 -3.0162 -3.2909 32 1 1.3346 -4.4457 0.4464 33 1 2.9389 -3.7350 0.1618 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575545606.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:53 Heat of formation + Delta-G solvation = 34.947237 kcal Electronic energy + Delta-G solvation = -14103.306812 eV Core-core repulsion = 11972.046931 eV Total energy + Delta-G solvation = -2131.259881 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.27595 -33.88613 -33.36762 -30.74391 -29.10505 -26.13567 -25.64367 -23.27888 -20.89068 -19.71803 -18.59245 -16.18630 -15.13909 -14.89426 -14.44001 -14.13049 -13.58865 -13.23058 -12.64679 -12.45940 -11.94699 -11.34596 -11.04460 -10.84462 -10.66471 -10.45583 -10.17404 -9.98349 -9.82557 -9.65133 -9.43967 -9.16339 -8.86342 -8.17103 -7.65665 -6.47044 -5.53936 -2.89668 3.52680 3.60774 3.63138 4.72184 5.24462 5.56015 5.65559 5.73677 5.83751 5.94760 6.04293 6.24257 6.28998 6.40201 6.57118 6.61182 6.68076 6.85213 6.92294 6.96456 7.06659 7.16710 7.37466 7.68660 7.77407 8.01670 8.13494 8.22409 8.26957 8.66530 9.48579 10.09502 10.59949 11.54420 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.037322 B = 0.016178 C = 0.013468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.045331 B = 1730.350618 C = 2078.437883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.010 4.010 3 Si 0.896 3.104 4 H -0.282 1.282 5 H -0.297 1.297 6 H -0.297 1.297 7 C -0.203 4.203 8 H 0.072 0.928 9 N -0.585 5.585 10 C 0.168 3.832 11 C -0.132 4.132 12 C -0.130 4.130 13 C -0.110 4.110 14 C -0.130 4.130 15 C 0.081 3.919 16 H 0.003 0.997 17 N -0.820 5.820 18 C 0.148 3.852 19 H 0.246 0.754 20 H 0.086 0.914 21 H 0.001 0.999 22 H 0.105 0.895 23 H 0.028 0.972 24 H 0.036 0.964 25 H 0.062 0.938 26 H 0.047 0.953 27 H 0.038 0.962 28 H 0.140 0.860 29 H 0.029 0.971 30 H 0.326 0.674 31 H 0.322 0.678 32 H 0.053 0.947 33 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.258 -7.457 -1.509 7.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.206 4.206 3 Si 0.728 3.272 4 H -0.208 1.208 5 H -0.224 1.224 6 H -0.224 1.224 7 C -0.333 4.333 8 H 0.090 0.910 9 N -0.306 5.306 10 C 0.043 3.957 11 C -0.171 4.171 12 C -0.167 4.167 13 C -0.148 4.148 14 C -0.168 4.168 15 C -0.032 4.032 16 H 0.020 0.980 17 N -0.349 5.349 18 C 0.020 3.980 19 H 0.056 0.944 20 H 0.104 0.896 21 H 0.019 0.981 22 H 0.123 0.877 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.157 0.843 29 H 0.048 0.952 30 H 0.137 0.863 31 H 0.134 0.866 32 H 0.071 0.929 33 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -0.111 -6.701 -1.067 6.786 hybrid contribution 0.575 -0.118 -0.747 0.950 sum 0.463 -6.819 -1.815 7.072 Atomic orbital electron populations 1.70041 1.04808 1.24440 1.56653 1.24796 0.95190 0.97814 1.02783 0.86281 0.79326 0.84891 0.76662 1.20771 1.22421 1.22398 1.19200 0.93779 0.84252 1.36026 0.91012 1.44130 1.32958 1.00843 1.52648 1.21039 0.85339 0.99806 0.89563 1.22563 0.97880 0.93129 1.03485 1.21984 0.99629 0.99454 0.95668 1.21435 0.98594 0.97999 0.96748 1.22139 0.92172 1.03732 0.98717 1.22115 0.92608 0.90936 0.97530 0.97981 1.58537 1.04446 1.61213 1.10658 1.21078 0.96431 0.89334 0.91145 0.94365 0.89621 0.98050 0.87654 0.95303 0.94554 0.91991 0.93424 0.94275 0.84280 0.95183 0.86272 0.86649 0.92871 0.96298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.49 9.42 55.49 0.52 -24.96 16 2 C -0.01 -0.29 4.87 -17.43 -0.08 -0.37 16 3 Si 0.90 22.32 29.60 -169.99 -5.03 17.29 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 7 C -0.20 -5.42 8.03 -15.06 -0.12 -5.54 16 8 H 0.07 1.98 7.77 -52.49 -0.41 1.57 16 9 N -0.58 -14.14 1.74 -172.44 -0.30 -14.44 16 10 C 0.17 3.97 5.16 -3.37 -0.02 3.95 16 11 C -0.13 -2.89 5.08 -26.16 -0.13 -3.02 16 12 C -0.13 -2.44 5.48 -26.75 -0.15 -2.59 16 13 C -0.11 -2.00 5.67 -26.94 -0.15 -2.15 16 14 C -0.13 -2.70 5.02 -26.45 -0.13 -2.83 16 15 C 0.08 1.58 3.15 -67.28 -0.21 1.37 16 16 H 0.00 0.05 7.89 -51.93 -0.41 -0.36 16 17 N -0.82 -15.46 8.23 -4.30 -0.04 -15.49 16 18 C 0.15 3.09 5.20 -4.07 -0.02 3.06 16 19 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 20 H 0.09 2.27 6.06 -51.93 -0.31 1.96 16 21 H 0.00 0.03 7.97 -51.93 -0.41 -0.38 16 22 H 0.11 2.63 4.22 -51.93 -0.22 2.41 16 23 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 1.16 4.50 -51.93 -0.23 0.93 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.65 7.85 -51.93 -0.41 0.24 16 28 H 0.14 3.47 3.61 -51.93 -0.19 3.28 16 29 H 0.03 0.60 8.09 -51.93 -0.42 0.18 16 30 H 0.33 5.50 9.02 -39.29 -0.35 5.14 16 31 H 0.32 5.46 8.96 -39.29 -0.35 5.11 16 32 H 0.05 1.04 5.07 -51.93 -0.26 0.78 16 33 H 0.02 0.40 8.11 -51.93 -0.42 -0.02 16 LS Contribution 239.82 15.07 3.61 3.61 Total: -1.00 -27.73 239.82 -7.06 -34.79 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -4.81 Total: 7.32 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -1.02 Total: -8.12 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.19 Total: -54.90 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -27.73 -7.06 -34.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575545606.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.740 kcal (2) G-P(sol) polarization free energy of solvation -27.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds