Wall clock time and date at job start Mon Mar 30 2020 02:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86791 * 120.00116 * 2 1 4 4 H 1.48493 * 109.47338 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47019 * 300.00056 * 3 2 1 6 6 H 1.48496 * 109.47366 * 59.99874 * 3 2 1 7 7 C 1.38809 * 119.99797 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00529 * 160.67764 * 7 2 1 9 9 N 1.36940 * 120.00451 * 340.67474 * 7 2 1 10 10 C 1.47138 * 120.18174 * 336.40503 * 9 7 2 11 11 C 1.53618 * 107.51766 * 107.87744 * 10 9 7 12 12 C 1.53490 * 108.46533 * 69.77913 * 11 10 9 13 13 C 1.52472 * 109.14645 * 245.78144 * 12 11 10 14 14 C 1.53115 * 109.67099 * 43.93070 * 13 12 11 15 15 C 1.53433 * 109.35191 * 77.03297 * 14 13 12 16 16 H 1.09000 * 109.63137 * 47.35136 * 15 14 13 17 17 N 1.46894 * 109.63552 * 167.74698 * 15 14 13 18 18 C 1.46063 * 120.18903 * 156.42057 * 9 7 2 19 19 H 0.96998 * 120.00165 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.84927 * 348.36986 * 10 9 7 21 21 H 1.09003 * 109.84719 * 227.37827 * 10 9 7 22 22 H 1.08999 * 109.64235 * 310.08460 * 11 10 9 23 23 H 1.09004 * 109.80798 * 189.56552 * 11 10 9 24 24 H 1.08995 * 109.52813 * 125.88467 * 12 11 10 25 25 H 1.08999 * 109.58086 * 5.71279 * 12 11 10 26 26 H 1.09002 * 109.44232 * 283.86348 * 13 12 11 27 27 H 1.08999 * 109.40250 * 163.96807 * 13 12 11 28 28 H 1.08996 * 109.49047 * 317.06655 * 14 13 12 29 29 H 1.09006 * 109.51145 * 197.00747 * 14 13 12 30 30 H 1.00903 * 111.00407 * 179.60357 * 17 15 14 31 31 H 1.00899 * 111.00067 * 303.56090 * 17 15 14 32 32 H 1.08996 * 109.35717 * 172.83136 * 18 9 7 33 33 H 1.09002 * 109.35505 * 53.23968 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8914 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0446 -1.2285 -0.3100 9 7 1.3834 -2.3549 0.3914 10 6 0.2097 -2.2945 1.2767 11 6 -1.0244 -2.6482 0.4332 12 6 -0.9555 -4.1384 0.0719 13 6 -0.7792 -4.2797 -1.4360 14 6 0.2664 -3.2756 -1.9290 15 6 1.6693 -3.7899 -1.5805 16 1 1.7569 -4.8378 -1.8675 17 7 2.6777 -2.9964 -2.2954 18 6 1.8764 -3.6512 -0.0668 19 1 -0.4850 0.8400 0.0004 20 1 0.1043 -1.2887 1.6834 21 1 0.3213 -3.0130 2.0887 22 1 -1.0291 -2.0501 -0.4781 23 1 -1.9314 -2.4515 1.0050 24 1 -1.8784 -4.6306 0.3784 25 1 -0.1099 -4.5993 0.5823 26 1 -1.7302 -4.0863 -1.9322 27 1 -0.4480 -5.2918 -1.6685 28 1 0.1017 -2.3124 -1.4460 29 1 0.1793 -3.1603 -3.0094 30 1 3.6100 -3.3137 -2.0757 31 1 2.5142 -3.0162 -3.2909 32 1 1.3346 -4.4457 0.4464 33 1 2.9389 -3.7350 0.1618 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575545606.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:53 Heat of formation + Delta-G solvation = 17.333492 kcal Electronic energy + Delta-G solvation = -14104.070601 eV Core-core repulsion = 11972.046931 eV Total energy + Delta-G solvation = -2132.023670 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.94246 -35.65361 -34.97712 -32.70161 -30.73884 -27.95205 -27.29129 -25.09817 -22.69507 -21.30431 -20.25059 -18.13905 -16.86646 -16.46531 -16.26555 -15.73951 -15.34681 -15.07372 -14.22648 -14.11740 -13.61792 -13.09706 -12.89207 -12.70032 -12.52853 -12.23240 -11.96007 -11.80441 -11.63580 -11.30501 -11.17560 -10.75030 -10.61411 -10.18513 -9.12157 -8.41460 -7.60379 -4.95740 1.51513 1.55691 1.62994 2.69552 3.53111 3.74063 3.95017 4.22367 4.30194 4.39320 4.49822 4.65945 4.74577 4.85759 4.91408 5.06616 5.15215 5.17407 5.32869 5.35157 5.46137 5.49964 5.76371 5.84620 5.91428 6.08805 6.37755 6.59427 6.71461 6.92058 7.44221 8.13648 8.58596 9.44830 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.037322 B = 0.016178 C = 0.013468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.045331 B = 1730.350618 C = 2078.437883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.056 4.056 3 Si 0.944 3.056 4 H -0.277 1.277 5 H -0.305 1.305 6 H -0.302 1.302 7 C -0.194 4.194 8 H 0.063 0.937 9 N -0.593 5.593 10 C 0.169 3.831 11 C -0.124 4.124 12 C -0.122 4.122 13 C -0.104 4.104 14 C -0.131 4.131 15 C 0.087 3.913 16 H 0.029 0.971 17 N -0.839 5.839 18 C 0.143 3.857 19 H 0.237 0.763 20 H 0.049 0.951 21 H 0.019 0.981 22 H 0.076 0.924 23 H 0.027 0.973 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.099 0.901 29 H 0.029 0.971 30 H 0.336 0.664 31 H 0.333 0.667 32 H 0.071 0.929 33 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.535 -9.274 -1.773 9.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.250 4.250 3 Si 0.777 3.223 4 H -0.203 1.203 5 H -0.234 1.234 6 H -0.230 1.230 7 C -0.325 4.325 8 H 0.081 0.919 9 N -0.315 5.315 10 C 0.044 3.956 11 C -0.163 4.163 12 C -0.159 4.159 13 C -0.142 4.142 14 C -0.169 4.169 15 C -0.026 4.026 16 H 0.047 0.953 17 N -0.369 5.369 18 C 0.017 3.983 19 H 0.046 0.954 20 H 0.068 0.932 21 H 0.037 0.963 22 H 0.095 0.905 23 H 0.046 0.954 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.117 0.883 29 H 0.047 0.953 30 H 0.149 0.851 31 H 0.145 0.855 32 H 0.089 0.911 33 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 0.187 -8.542 -1.335 8.647 hybrid contribution 0.523 0.418 -0.658 0.939 sum 0.710 -8.124 -1.993 8.395 Atomic orbital electron populations 1.70189 1.05428 1.23927 1.57981 1.25289 0.95843 0.99825 1.04028 0.85518 0.78637 0.82395 0.75735 1.20252 1.23372 1.22993 1.19210 0.93321 0.85324 1.34607 0.91942 1.44193 1.32944 1.01430 1.52930 1.20947 0.86210 0.98259 0.90214 1.22361 0.96896 0.95276 1.01765 1.21880 1.00979 0.96850 0.96162 1.21387 0.98128 0.98545 0.96135 1.22045 0.93854 1.02676 0.98314 1.21981 0.91989 0.92292 0.96300 0.95293 1.58467 1.05133 1.61761 1.11581 1.21231 0.96474 0.88103 0.92483 0.95357 0.93223 0.96300 0.90535 0.95387 0.92252 0.91591 0.92996 0.91675 0.88297 0.95267 0.85071 0.85463 0.91057 0.96244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.86 9.42 21.65 0.20 -52.66 16 2 C -0.06 -3.13 4.87 84.86 0.41 -2.71 16 3 Si 0.94 46.53 29.60 68.60 2.03 48.56 16 4 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.31 -15.37 7.11 99.48 0.71 -14.66 16 6 H -0.30 -15.01 7.11 99.48 0.71 -14.31 16 7 C -0.19 -10.33 8.03 84.03 0.67 -9.65 16 8 H 0.06 3.42 7.77 -2.91 -0.02 3.39 16 9 N -0.59 -28.19 1.74 -699.49 -1.22 -29.41 16 10 C 0.17 7.90 5.16 86.47 0.45 8.35 16 11 C -0.12 -5.33 5.08 30.97 0.16 -5.18 16 12 C -0.12 -4.19 5.48 30.58 0.17 -4.02 16 13 C -0.10 -3.45 5.67 30.46 0.17 -3.28 16 14 C -0.13 -5.18 5.02 30.78 0.15 -5.03 16 15 C 0.09 3.16 3.15 45.20 0.14 3.30 16 16 H 0.03 0.92 7.89 -2.39 -0.02 0.91 16 17 N -0.84 -30.01 8.23 -167.51 -1.38 -31.39 16 18 C 0.14 5.65 5.20 86.60 0.45 6.10 16 19 H 0.24 13.53 8.31 -92.71 -0.77 12.76 16 20 H 0.05 2.67 6.06 -2.39 -0.01 2.66 16 21 H 0.02 0.81 7.97 -2.39 -0.02 0.79 16 22 H 0.08 3.83 4.22 -2.39 -0.01 3.82 16 23 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 24 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.07 2.22 4.50 -2.39 -0.01 2.21 16 26 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.06 1.85 7.85 -2.39 -0.02 1.83 16 28 H 0.10 4.89 3.61 -2.39 -0.01 4.88 16 29 H 0.03 1.12 8.09 -2.38 -0.02 1.10 16 30 H 0.34 10.64 9.02 -89.69 -0.81 9.83 16 31 H 0.33 10.65 8.96 -89.69 -0.80 9.84 16 32 H 0.07 2.54 5.07 -2.39 -0.01 2.53 16 33 H 0.02 0.77 8.11 -2.39 -0.02 0.75 16 Total: -1.00 -58.61 239.82 1.92 -56.68 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -0.49 Total: 20.33 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 2.78 Total: -12.11 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -2.39 Total: -113.46 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -58.61 1.92 -56.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575545606.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.017 kcal (2) G-P(sol) polarization free energy of solvation -58.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds