Wall clock time and date at job start Mon Mar 30 2020 02:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99835 * 2 1 4 4 H 1.48503 * 109.47215 * 239.99739 * 3 2 1 5 5 H 1.48502 * 109.46897 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46960 * 119.99466 * 3 2 1 7 7 C 1.38818 * 120.00353 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99934 * 194.59395 * 7 2 1 9 9 N 1.36934 * 119.99802 * 14.58731 * 7 2 1 10 10 C 1.45337 * 120.36478 * 24.80746 * 9 7 2 11 11 C 1.53354 * 108.37630 * 136.62816 * 10 9 7 12 12 C 1.52875 * 109.43524 * 282.22815 * 11 10 9 13 13 C 1.53955 * 109.68394 * 72.93241 * 12 11 10 14 14 C 1.52448 * 110.73012 * 44.39289 * 13 12 11 15 15 C 1.53797 * 109.40878 * 246.27074 * 14 13 12 16 16 H 1.09001 * 109.52200 * 317.93040 * 15 14 13 17 17 N 1.46899 * 109.52381 * 197.80246 * 15 14 13 18 18 C 1.46961 * 120.36325 * 204.79046 * 9 7 2 19 19 H 0.96998 * 120.00527 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.67693 * 256.36746 * 10 9 7 21 21 H 1.08996 * 109.67357 * 16.86618 * 10 9 7 22 22 H 1.09004 * 109.40455 * 162.27887 * 11 10 9 23 23 H 1.08991 * 109.51484 * 42.25171 * 11 10 9 24 24 H 1.09002 * 109.42922 * 312.88237 * 12 11 10 25 25 H 1.08998 * 109.43114 * 192.98841 * 12 11 10 26 26 H 1.09000 * 109.22513 * 164.71430 * 13 12 11 27 27 H 1.08994 * 109.22878 * 284.11402 * 13 12 11 28 28 H 1.09007 * 109.47820 * 6.24882 * 14 13 12 29 29 H 1.08994 * 109.48141 * 126.27049 * 14 13 12 30 30 H 1.00904 * 110.99783 * 179.97438 * 17 15 14 31 31 H 1.00897 * 111.00335 * 303.95463 * 17 15 14 32 32 H 1.09000 * 109.53339 * 171.77676 * 18 9 7 33 33 H 1.08995 * 109.59571 * 51.58574 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0642 -1.2171 0.2362 9 7 1.3588 -2.3691 -0.2976 10 6 0.1541 -2.3509 -1.1104 11 6 0.2389 -3.4966 -2.1262 12 6 1.1719 -3.0953 -3.2688 13 6 2.6311 -3.1161 -2.7784 14 6 2.9055 -4.3687 -1.9539 15 6 3.1880 -3.9692 -0.4959 16 1 3.8298 -3.0883 -0.4774 17 7 3.8571 -5.0787 0.1964 18 6 1.8703 -3.6536 0.2004 19 1 -0.4851 0.8400 -0.0004 20 1 -0.7201 -2.4880 -0.4739 21 1 0.0800 -1.3986 -1.6354 22 1 -0.7550 -3.7024 -2.5237 23 1 0.6270 -4.3895 -1.6364 24 1 0.9180 -2.0913 -3.6087 25 1 1.0569 -3.7975 -4.0945 26 1 3.2994 -3.0996 -3.6393 27 1 2.8158 -2.2351 -2.1638 28 1 2.0357 -5.0248 -1.9891 29 1 3.7710 -4.8904 -2.3624 30 1 4.0536 -4.8397 1.1568 31 1 3.3092 -5.9239 0.1386 32 1 1.1476 -4.4411 -0.0131 33 1 2.0327 -3.5900 1.2763 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575545607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:55 Heat of formation + Delta-G solvation = 17.089481 kcal Electronic energy + Delta-G solvation = -13861.813761 eV Core-core repulsion = 11729.779510 eV Total energy + Delta-G solvation = -2132.034251 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.37624 -34.31622 -33.56866 -31.00443 -29.49464 -26.41842 -25.32612 -23.65457 -20.70461 -20.37848 -18.76422 -16.49041 -15.46408 -14.91953 -14.83565 -14.30253 -13.59952 -13.40222 -12.71569 -12.46741 -12.29287 -11.48652 -11.24176 -11.01935 -10.79790 -10.47166 -10.30031 -10.19679 -10.14763 -9.93695 -9.81740 -9.59432 -9.22454 -8.49871 -8.23031 -6.55742 -5.75130 -3.16990 3.39154 3.44852 3.46038 4.50491 5.06068 5.37591 5.48900 5.62050 5.63002 5.81671 5.91240 6.03176 6.22338 6.28253 6.39388 6.51958 6.53249 6.69240 6.75386 6.83395 6.87224 7.01020 7.05518 7.35038 7.47535 7.65410 7.74240 7.85398 7.90136 8.46505 9.27786 9.90613 10.42974 11.32294 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034671 B = 0.014298 C = 0.012596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.397142 B = 1957.863010 C = 2222.363158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.249 4.249 8 H 0.065 0.935 9 N -0.585 5.585 10 C 0.181 3.819 11 C -0.158 4.158 12 C -0.102 4.102 13 C -0.118 4.118 14 C -0.102 4.102 15 C 0.066 3.934 16 H 0.083 0.917 17 N -0.849 5.849 18 C 0.117 3.883 19 H 0.253 0.747 20 H 0.012 0.988 21 H 0.081 0.919 22 H 0.042 0.958 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.094 0.906 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.335 0.665 31 H 0.328 0.672 32 H 0.044 0.956 33 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.666 -7.079 -3.123 8.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.195 4.195 3 Si 0.731 3.269 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.379 4.379 8 H 0.083 0.917 9 N -0.308 5.308 10 C 0.055 3.945 11 C -0.196 4.196 12 C -0.139 4.139 13 C -0.156 4.156 14 C -0.140 4.140 15 C -0.047 4.047 16 H 0.101 0.899 17 N -0.377 5.377 18 C -0.011 4.011 19 H 0.063 0.937 20 H 0.030 0.970 21 H 0.099 0.901 22 H 0.061 0.939 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.112 0.888 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.147 0.853 31 H 0.139 0.861 32 H 0.062 0.938 33 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 3.127 -6.807 -3.656 8.336 hybrid contribution -0.510 0.924 0.674 1.252 sum 2.617 -5.884 -2.982 7.096 Atomic orbital electron populations 1.70031 1.05168 1.25439 1.54475 1.24992 0.95291 0.98188 1.01074 0.86397 0.78870 0.83554 0.78125 1.21004 1.21700 1.20988 1.19037 0.91959 0.84414 1.42458 0.91695 1.43645 1.29066 1.00962 1.57120 1.20596 0.87678 0.96044 0.90155 1.22607 0.97411 1.01387 0.98224 1.21553 0.95606 1.00082 0.96681 1.21642 0.95349 1.00052 0.98596 1.21622 0.99898 0.97777 0.94709 1.22299 0.95858 0.92880 0.93643 0.89919 1.59127 1.51893 1.06486 1.20162 1.21592 0.94242 0.89725 0.95556 0.93670 0.96961 0.90112 0.93914 0.91849 0.92605 0.94475 0.94387 0.88788 0.92471 0.93096 0.85342 0.86067 0.93759 0.95799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.16 11.00 55.49 0.61 -25.55 16 2 C 0.00 0.08 4.98 -17.43 -0.09 -0.01 16 3 Si 0.90 21.71 29.58 -169.99 -5.03 16.68 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.25 -6.64 8.11 -15.06 -0.12 -6.76 16 8 H 0.07 1.72 7.16 -52.49 -0.38 1.34 16 9 N -0.59 -14.13 1.70 -173.97 -0.30 -14.42 16 10 C 0.18 4.31 4.60 -4.48 -0.02 4.29 16 11 C -0.16 -3.04 5.44 -26.61 -0.14 -3.18 16 12 C -0.10 -1.85 5.75 -26.30 -0.15 -2.00 16 13 C -0.12 -2.19 5.41 -26.52 -0.14 -2.34 16 14 C -0.10 -1.76 5.05 -26.60 -0.13 -1.89 16 15 C 0.07 1.20 2.94 -67.64 -0.20 1.00 16 16 H 0.08 1.72 6.64 -51.93 -0.34 1.38 16 17 N -0.85 -12.96 9.26 -4.60 -0.04 -13.01 16 18 C 0.12 2.40 5.16 -4.13 -0.02 2.37 16 19 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 20 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 21 H 0.08 2.15 6.00 -51.93 -0.31 1.84 16 22 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.06 1.18 3.34 -51.93 -0.17 1.00 16 24 H 0.06 1.07 7.87 -51.93 -0.41 0.66 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.09 2.06 5.38 -51.93 -0.28 1.78 16 28 H 0.06 0.96 5.47 -51.92 -0.28 0.67 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.33 4.80 9.02 -39.29 -0.35 4.45 16 31 H 0.33 4.45 8.99 -39.29 -0.35 4.10 16 32 H 0.04 0.86 6.07 -51.93 -0.32 0.54 16 33 H 0.02 0.51 8.12 -51.93 -0.42 0.09 16 LS Contribution 243.38 15.07 3.67 3.67 Total: -1.00 -27.94 243.38 -6.98 -34.92 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -4.87 Total: 6.23 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -1.02 Total: -8.52 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.27 Total: -52.98 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -27.94 -6.98 -34.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575545607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.009 kcal (2) G-P(sol) polarization free energy of solvation -27.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds