Wall clock time and date at job start Mon Mar 30 2020 02:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99835 * 2 1 4 4 H 1.48503 * 109.47215 * 239.99739 * 3 2 1 5 5 H 1.48502 * 109.46897 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46960 * 119.99466 * 3 2 1 7 7 C 1.38818 * 120.00353 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99934 * 194.59395 * 7 2 1 9 9 N 1.36934 * 119.99802 * 14.58731 * 7 2 1 10 10 C 1.45337 * 120.36478 * 24.80746 * 9 7 2 11 11 C 1.53354 * 108.37630 * 136.62816 * 10 9 7 12 12 C 1.52875 * 109.43524 * 282.22815 * 11 10 9 13 13 C 1.53955 * 109.68394 * 72.93241 * 12 11 10 14 14 C 1.52448 * 110.73012 * 44.39289 * 13 12 11 15 15 C 1.53797 * 109.40878 * 246.27074 * 14 13 12 16 16 H 1.09001 * 109.52200 * 317.93040 * 15 14 13 17 17 N 1.46899 * 109.52381 * 197.80246 * 15 14 13 18 18 C 1.46961 * 120.36325 * 204.79046 * 9 7 2 19 19 H 0.96998 * 120.00527 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.67693 * 256.36746 * 10 9 7 21 21 H 1.08996 * 109.67357 * 16.86618 * 10 9 7 22 22 H 1.09004 * 109.40455 * 162.27887 * 11 10 9 23 23 H 1.08991 * 109.51484 * 42.25171 * 11 10 9 24 24 H 1.09002 * 109.42922 * 312.88237 * 12 11 10 25 25 H 1.08998 * 109.43114 * 192.98841 * 12 11 10 26 26 H 1.09000 * 109.22513 * 164.71430 * 13 12 11 27 27 H 1.08994 * 109.22878 * 284.11402 * 13 12 11 28 28 H 1.09007 * 109.47820 * 6.24882 * 14 13 12 29 29 H 1.08994 * 109.48141 * 126.27049 * 14 13 12 30 30 H 1.00904 * 110.99783 * 179.97438 * 17 15 14 31 31 H 1.00897 * 111.00335 * 303.95463 * 17 15 14 32 32 H 1.09000 * 109.53339 * 171.77676 * 18 9 7 33 33 H 1.08995 * 109.59571 * 51.58574 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0642 -1.2171 0.2362 9 7 1.3588 -2.3691 -0.2976 10 6 0.1541 -2.3509 -1.1104 11 6 0.2389 -3.4966 -2.1262 12 6 1.1719 -3.0953 -3.2688 13 6 2.6311 -3.1161 -2.7784 14 6 2.9055 -4.3687 -1.9539 15 6 3.1880 -3.9692 -0.4959 16 1 3.8298 -3.0883 -0.4774 17 7 3.8571 -5.0787 0.1964 18 6 1.8703 -3.6536 0.2004 19 1 -0.4851 0.8400 -0.0004 20 1 -0.7201 -2.4880 -0.4739 21 1 0.0800 -1.3986 -1.6354 22 1 -0.7550 -3.7024 -2.5237 23 1 0.6270 -4.3895 -1.6364 24 1 0.9180 -2.0913 -3.6087 25 1 1.0569 -3.7975 -4.0945 26 1 3.2994 -3.0996 -3.6393 27 1 2.8158 -2.2351 -2.1638 28 1 2.0357 -5.0248 -1.9891 29 1 3.7710 -4.8904 -2.3624 30 1 4.0536 -4.8397 1.1568 31 1 3.3092 -5.9239 0.1386 32 1 1.1476 -4.4411 -0.0131 33 1 2.0327 -3.5900 1.2763 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575545607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:55 Heat of formation + Delta-G solvation = -1.290080 kcal Electronic energy + Delta-G solvation = -13862.610759 eV Core-core repulsion = 11729.779510 eV Total energy + Delta-G solvation = -2132.831249 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.00742 -35.99091 -35.18968 -32.95787 -31.01528 -28.19354 -26.95346 -25.46711 -22.35644 -22.00746 -20.40215 -18.42574 -16.94820 -16.80372 -16.25196 -16.01063 -15.49587 -14.95246 -14.34686 -14.03314 -13.95574 -13.23164 -12.91167 -12.87794 -12.68631 -12.23735 -12.09541 -11.95764 -11.71821 -11.54920 -11.35163 -11.27717 -10.87985 -10.42881 -9.72519 -8.50999 -7.82650 -5.26389 1.45156 1.47223 1.53292 2.51491 3.31243 3.59789 3.94949 3.99789 4.15928 4.31605 4.37924 4.47230 4.68850 4.71895 4.85312 4.99842 5.05145 5.15050 5.15628 5.27292 5.34054 5.49735 5.53388 5.60281 5.66925 5.86312 5.88140 6.31915 6.42232 6.72858 7.21326 7.94790 8.39742 9.21978 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034671 B = 0.014298 C = 0.012596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.397142 B = 1957.863010 C = 2222.363158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.051 4.051 3 Si 0.959 3.041 4 H -0.279 1.279 5 H -0.296 1.296 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.064 0.936 9 N -0.596 5.596 10 C 0.189 3.811 11 C -0.146 4.146 12 C -0.099 4.099 13 C -0.117 4.117 14 C -0.094 4.094 15 C 0.081 3.919 16 H 0.054 0.946 17 N -0.841 5.841 18 C 0.117 3.883 19 H 0.247 0.753 20 H -0.019 1.019 21 H 0.046 0.954 22 H 0.060 0.940 23 H 0.077 0.923 24 H 0.038 0.962 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.342 0.658 31 H 0.343 0.657 32 H 0.059 0.941 33 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.689 -8.732 -3.910 10.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.246 4.246 3 Si 0.788 3.212 4 H -0.205 1.205 5 H -0.223 1.223 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.081 0.919 9 N -0.319 5.319 10 C 0.063 3.937 11 C -0.184 4.184 12 C -0.136 4.136 13 C -0.155 4.155 14 C -0.132 4.132 15 C -0.033 4.033 16 H 0.072 0.928 17 N -0.370 5.370 18 C -0.010 4.010 19 H 0.056 0.944 20 H -0.002 1.002 21 H 0.065 0.935 22 H 0.078 0.922 23 H 0.095 0.905 24 H 0.056 0.944 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.154 0.846 31 H 0.156 0.844 32 H 0.078 0.922 33 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 4.177 -8.500 -4.437 10.459 hybrid contribution -0.806 1.369 0.950 1.851 sum 3.371 -7.131 -3.487 8.624 Atomic orbital electron populations 1.70192 1.06445 1.25491 1.56453 1.25662 0.95980 1.01051 1.01928 0.85462 0.77590 0.79929 0.78235 1.20539 1.22256 1.20378 1.19273 0.92015 0.85553 1.40775 0.91868 1.43816 1.28837 1.01688 1.57562 1.20369 0.86530 0.96403 0.90409 1.22445 0.98998 0.99593 0.97355 1.21523 0.94983 1.00016 0.97096 1.21591 0.95970 0.99111 0.98869 1.21553 1.01015 0.97215 0.93409 1.21957 0.93760 0.92945 0.94618 0.92807 1.59054 1.51333 1.06011 1.20575 1.21778 0.95757 0.88366 0.95111 0.94392 1.00154 0.93523 0.92179 0.90487 0.94360 0.91132 0.92642 0.92649 0.91242 0.91590 0.84613 0.84404 0.92222 0.96906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.94 11.00 21.65 0.24 -55.70 16 2 C -0.05 -2.88 4.98 84.86 0.42 -2.46 16 3 Si 0.96 45.48 29.58 68.60 2.03 47.51 16 4 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 7 C -0.25 -13.30 8.11 84.04 0.68 -12.62 16 8 H 0.06 3.39 7.16 -2.91 -0.02 3.37 16 9 N -0.60 -28.97 1.70 -704.31 -1.20 -30.17 16 10 C 0.19 9.12 4.60 86.72 0.40 9.52 16 11 C -0.15 -5.34 5.44 30.67 0.17 -5.17 16 12 C -0.10 -3.37 5.75 30.88 0.18 -3.19 16 13 C -0.12 -4.11 5.41 30.73 0.17 -3.94 16 14 C -0.09 -2.94 5.05 30.68 0.15 -2.79 16 15 C 0.08 2.77 2.94 44.97 0.13 2.91 16 16 H 0.05 2.20 6.64 -2.39 -0.02 2.18 16 17 N -0.84 -23.29 9.26 -168.47 -1.56 -24.85 16 18 C 0.12 4.66 5.16 86.07 0.44 5.10 16 19 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 20 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 21 H 0.05 2.56 6.00 -2.39 -0.01 2.55 16 22 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 23 H 0.08 2.62 3.34 -2.39 -0.01 2.61 16 24 H 0.04 1.43 7.87 -2.39 -0.02 1.41 16 25 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.05 2.39 5.38 -2.39 -0.01 2.38 16 28 H 0.07 2.02 5.47 -2.38 -0.01 2.01 16 29 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.34 8.98 9.02 -89.69 -0.81 8.17 16 31 H 0.34 8.05 8.99 -89.70 -0.81 7.25 16 32 H 0.06 2.17 6.07 -2.39 -0.01 2.16 16 33 H 0.01 0.54 8.12 -2.39 -0.02 0.52 16 Total: -1.00 -60.67 243.38 1.75 -58.92 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -0.50 Total: 16.94 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: 2.74 Total: -12.65 kcal Atomic # 7 Polarization: -108.20 SS G_CDS: -2.52 Total: -110.72 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -60.67 1.75 -58.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575545607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.631 kcal (2) G-P(sol) polarization free energy of solvation -60.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds