Wall clock time and date at job start Mon Mar 30 2020 01:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47305 * 2 1 4 4 C 1.53000 * 109.47335 * 174.83821 * 3 2 1 5 5 C 1.52999 * 112.84836 * 173.85756 * 4 3 2 6 6 H 1.09005 * 109.46830 * 178.63818 * 5 4 3 7 7 O 1.42895 * 109.47329 * 58.63299 * 5 4 3 8 8 C 1.50703 * 109.46819 * 298.63007 * 5 4 3 9 9 H 1.07999 * 120.00334 * 355.18924 * 8 5 4 10 10 C 1.37878 * 119.99458 * 175.18484 * 8 5 4 11 11 N 1.31512 * 120.00212 * 0.02562 * 10 8 5 12 12 Si 1.86800 * 119.99867 * 180.02562 * 10 8 5 13 13 H 1.48505 * 109.47128 * 60.00143 * 12 10 8 14 14 H 1.48493 * 109.47443 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47267 * 300.00460 * 12 10 8 16 16 C 1.53778 * 113.61295 * 42.54790 * 4 3 2 17 17 C 1.53786 * 87.07960 * 220.02103 * 16 4 3 18 18 C 1.53782 * 87.08197 * 25.43292 * 17 16 4 19 19 H 1.08998 * 109.47175 * 300.00265 * 1 2 3 20 20 H 1.08998 * 109.46875 * 60.00159 * 1 2 3 21 21 H 1.08999 * 109.47221 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47044 * 120.00607 * 2 1 3 23 23 H 1.09006 * 109.46623 * 240.00000 * 2 1 3 24 24 H 1.09004 * 109.46923 * 294.83647 * 3 2 1 25 25 H 1.09002 * 109.46953 * 54.83146 * 3 2 1 26 26 H 0.96690 * 114.00018 * 300.00204 * 7 5 4 27 27 H 0.96999 * 120.00158 * 179.97438 * 11 10 8 28 28 H 1.09002 * 113.61481 * 334.56996 * 16 4 3 29 29 H 1.08999 * 113.61762 * 105.47578 * 16 4 3 30 30 H 1.08995 * 113.61417 * 270.88192 * 17 16 4 31 31 H 1.09004 * 113.61198 * 139.98453 * 17 16 4 32 32 H 1.08997 * 113.61700 * 220.01795 * 18 17 16 33 33 H 1.09004 * 113.61390 * 89.11349 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5645 1.4444 0.1298 5 6 4.1711 2.8419 -0.0121 6 1 5.2523 2.7830 0.1130 7 8 3.6220 3.7032 0.9871 8 6 3.8528 3.3911 -1.3789 9 1 3.3434 2.7736 -2.1039 10 6 4.2119 4.6821 -1.7038 11 7 4.8325 5.4339 -0.8211 12 14 3.8168 5.3632 -3.3977 13 1 2.3476 5.3347 -3.6124 14 1 4.3035 6.7628 -3.4943 15 1 4.4844 4.5338 -4.4329 16 6 4.2578 0.3791 -0.7358 17 6 5.2071 0.1455 0.4513 18 6 4.0794 0.6710 1.3552 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5139 0.8899 23 1 1.8933 -0.5139 -0.8901 24 1 1.7542 1.9289 -0.9327 25 1 1.6031 1.9823 0.8401 26 1 2.6615 3.8025 0.9362 27 1 5.0855 6.3420 -1.0498 28 1 3.6244 -0.4783 -0.9636 29 1 4.7529 0.7869 -1.6170 30 1 6.0894 0.7853 0.4373 31 1 5.4472 -0.9046 0.6183 32 1 4.4304 1.3145 2.1619 33 1 3.3972 -0.1066 1.6990 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686137284.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:07 Heat of formation + Delta-G solvation = -51.067022 kcal Electronic energy + Delta-G solvation = -13484.890227 eV Core-core repulsion = 11317.607737 eV Total energy + Delta-G solvation = -2167.282490 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.25831 -34.66842 -33.48890 -32.01271 -28.30133 -26.48902 -24.88616 -23.46982 -21.27181 -21.06206 -17.14070 -16.76239 -15.18693 -14.75020 -14.63435 -14.38798 -13.58269 -12.93673 -12.64306 -12.35227 -12.27240 -11.91359 -11.51762 -10.99161 -10.87231 -10.79500 -10.62422 -10.57276 -10.10194 -10.04519 -9.96046 -9.36025 -9.21570 -8.73151 -8.44134 -7.94114 -5.92014 -4.08645 3.32009 3.37537 3.39288 4.44006 5.27996 5.33556 5.36801 5.44389 5.46817 5.56761 5.68315 5.69565 6.12290 6.17108 6.22178 6.26734 6.34594 6.39492 6.52089 6.62205 6.64266 6.68578 6.79490 6.85764 7.07166 7.22788 7.32325 7.84298 7.94053 8.29507 8.92035 9.47361 9.67824 11.11390 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.033374 B = 0.012344 C = 0.010862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.762572 B = 2267.772220 C = 2577.246310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.098 4.098 4 C -0.093 4.093 5 C 0.253 3.747 6 H 0.052 0.948 7 O -0.561 6.561 8 C -0.562 4.562 9 H 0.057 0.943 10 C 0.077 3.923 11 N -0.860 5.860 12 Si 0.884 3.116 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.277 1.277 16 C -0.133 4.133 17 C -0.140 4.140 18 C -0.140 4.140 19 H 0.050 0.950 20 H 0.052 0.948 21 H 0.044 0.956 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.343 0.657 27 H 0.259 0.741 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.565 -9.026 1.310 10.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.136 4.136 4 C -0.094 4.094 5 C 0.196 3.804 6 H 0.069 0.931 7 O -0.363 6.363 8 C -0.600 4.600 9 H 0.075 0.925 10 C -0.129 4.129 11 N -0.496 5.496 12 Si 0.712 3.288 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.203 1.203 16 C -0.170 4.170 17 C -0.178 4.178 18 C -0.177 4.177 19 H 0.069 0.931 20 H 0.071 0.929 21 H 0.063 0.937 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.187 0.813 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.832 -8.798 1.531 9.718 hybrid contribution -0.741 0.356 -1.215 1.467 sum -4.573 -8.443 0.315 9.607 Atomic orbital electron populations 1.21784 0.96857 1.00544 1.01610 1.21713 0.94713 0.98615 1.01404 1.21344 0.95298 0.94821 1.02093 1.22652 0.94430 0.97998 0.94272 1.19112 0.93075 0.81366 0.86874 0.93079 1.86537 1.23445 1.70366 1.55994 1.21610 1.40377 0.98487 0.99493 0.92520 1.25047 0.94357 0.97171 0.96303 1.70088 1.37881 1.08195 1.33473 0.86816 0.78774 0.78043 0.85194 1.20252 1.21358 1.20277 1.22975 0.98094 0.98368 0.97563 1.22755 0.97610 0.99368 0.98051 1.23041 0.97764 0.99288 0.97612 0.93078 0.92936 0.93656 0.92414 0.92210 0.91082 0.92797 0.81315 0.93154 0.91151 0.91158 0.90503 0.93070 0.91925 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.16 0.37 -1.59 16 2 C -0.13 -1.90 5.01 -26.73 -0.13 -2.03 16 3 C -0.10 -1.78 4.29 -26.73 -0.11 -1.89 16 4 C -0.09 -1.86 0.59 -153.70 -0.09 -1.95 16 5 C 0.25 6.36 2.35 -27.88 -0.07 6.29 16 6 H 0.05 1.43 7.30 -51.93 -0.38 1.05 16 7 O -0.56 -14.65 12.42 -35.23 -0.44 -15.09 16 8 C -0.56 -15.16 7.58 -34.44 -0.26 -15.43 16 9 H 0.06 1.50 7.14 -52.49 -0.38 1.13 16 10 C 0.08 2.15 5.38 -17.82 -0.10 2.05 16 11 N -0.86 -25.58 12.63 55.43 0.70 -24.88 16 12 Si 0.88 21.29 29.54 -169.99 -5.02 16.26 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 16 C -0.13 -2.45 6.83 -25.92 -0.18 -2.63 16 17 C -0.14 -2.44 7.73 -25.92 -0.20 -2.64 16 18 C -0.14 -2.52 7.04 -25.92 -0.18 -2.70 16 19 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 20 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.83 6.04 -51.93 -0.31 0.52 16 23 H 0.06 0.89 6.36 -51.93 -0.33 0.56 16 24 H 0.07 1.41 6.95 -51.93 -0.36 1.05 16 25 H 0.05 0.97 7.37 -51.93 -0.38 0.58 16 26 H 0.34 8.12 7.75 45.56 0.35 8.47 16 27 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.07 1.16 5.70 -51.93 -0.30 0.86 16 29 H 0.07 1.42 7.79 -51.93 -0.40 1.02 16 30 H 0.08 1.42 7.60 -51.93 -0.39 1.02 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 33 H 0.07 1.10 6.03 -51.93 -0.31 0.78 16 LS Contribution 257.63 15.07 3.88 3.88 Total: -1.00 -29.20 257.63 -6.27 -35.47 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -4.44 Total: 6.87 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: -0.95 Total: -22.52 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 0.70 Total: -24.88 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.44 Total: -15.09 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.20 -6.27 -35.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686137284.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.594 kcal (2) G-P(sol) polarization free energy of solvation -29.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds