Wall clock time and date at job start Mon Mar 30 2020 01:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47305 * 2 1 4 4 C 1.53000 * 109.47335 * 174.83821 * 3 2 1 5 5 C 1.52999 * 112.84836 * 173.85756 * 4 3 2 6 6 H 1.09005 * 109.46830 * 178.63818 * 5 4 3 7 7 O 1.42895 * 109.47329 * 58.63299 * 5 4 3 8 8 C 1.50703 * 109.46819 * 298.63007 * 5 4 3 9 9 H 1.07999 * 120.00334 * 355.18924 * 8 5 4 10 10 C 1.37878 * 119.99458 * 175.18484 * 8 5 4 11 11 N 1.31512 * 120.00212 * 0.02562 * 10 8 5 12 12 Si 1.86800 * 119.99867 * 180.02562 * 10 8 5 13 13 H 1.48505 * 109.47128 * 60.00143 * 12 10 8 14 14 H 1.48493 * 109.47443 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47267 * 300.00460 * 12 10 8 16 16 C 1.53778 * 113.61295 * 42.54790 * 4 3 2 17 17 C 1.53786 * 87.07960 * 220.02103 * 16 4 3 18 18 C 1.53782 * 87.08197 * 25.43292 * 17 16 4 19 19 H 1.08998 * 109.47175 * 300.00265 * 1 2 3 20 20 H 1.08998 * 109.46875 * 60.00159 * 1 2 3 21 21 H 1.08999 * 109.47221 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47044 * 120.00607 * 2 1 3 23 23 H 1.09006 * 109.46623 * 240.00000 * 2 1 3 24 24 H 1.09004 * 109.46923 * 294.83647 * 3 2 1 25 25 H 1.09002 * 109.46953 * 54.83146 * 3 2 1 26 26 H 0.96690 * 114.00018 * 300.00204 * 7 5 4 27 27 H 0.96999 * 120.00158 * 179.97438 * 11 10 8 28 28 H 1.09002 * 113.61481 * 334.56996 * 16 4 3 29 29 H 1.08999 * 113.61762 * 105.47578 * 16 4 3 30 30 H 1.08995 * 113.61417 * 270.88192 * 17 16 4 31 31 H 1.09004 * 113.61198 * 139.98453 * 17 16 4 32 32 H 1.08997 * 113.61700 * 220.01795 * 18 17 16 33 33 H 1.09004 * 113.61390 * 89.11349 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5645 1.4444 0.1298 5 6 4.1711 2.8419 -0.0121 6 1 5.2523 2.7830 0.1130 7 8 3.6220 3.7032 0.9871 8 6 3.8528 3.3911 -1.3789 9 1 3.3434 2.7736 -2.1039 10 6 4.2119 4.6821 -1.7038 11 7 4.8325 5.4339 -0.8211 12 14 3.8168 5.3632 -3.3977 13 1 2.3476 5.3347 -3.6124 14 1 4.3035 6.7628 -3.4943 15 1 4.4844 4.5338 -4.4329 16 6 4.2578 0.3791 -0.7358 17 6 5.2071 0.1455 0.4513 18 6 4.0794 0.6710 1.3552 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5139 0.8899 23 1 1.8933 -0.5139 -0.8901 24 1 1.7542 1.9289 -0.9327 25 1 1.6031 1.9823 0.8401 26 1 2.6615 3.8025 0.9362 27 1 5.0855 6.3420 -1.0498 28 1 3.6244 -0.4783 -0.9636 29 1 4.7529 0.7869 -1.6170 30 1 6.0894 0.7853 0.4373 31 1 5.4472 -0.9046 0.6183 32 1 4.4304 1.3145 2.1619 33 1 3.3972 -0.1066 1.6990 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686137284.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:07 Heat of formation + Delta-G solvation = -69.815163 kcal Electronic energy + Delta-G solvation = -13485.703207 eV Core-core repulsion = 11317.607737 eV Total energy + Delta-G solvation = -2168.095470 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.83326 -36.64737 -34.72330 -34.17223 -29.98278 -28.19162 -26.37700 -25.26846 -22.86200 -22.41056 -18.93307 -18.69285 -16.79876 -16.61227 -16.21073 -15.93308 -15.35917 -14.64810 -14.22958 -13.84596 -13.79329 -13.30684 -13.19841 -12.78580 -12.63592 -12.51175 -12.12069 -11.92429 -11.88125 -11.63291 -11.37092 -11.00044 -10.78528 -10.64983 -10.41155 -9.88795 -8.06895 -6.29986 1.39867 1.40961 1.48812 2.40940 3.17330 3.88565 3.92277 4.00544 4.10798 4.23773 4.27407 4.49275 4.58754 4.85963 4.89988 4.95025 4.98298 5.06987 5.09084 5.18371 5.23947 5.33422 5.35965 5.48592 5.57331 5.67203 5.70423 5.80111 5.96243 6.20420 6.79314 7.38402 7.60489 8.96544 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.033374 B = 0.012344 C = 0.010862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.762572 B = 2267.772220 C = 2577.246310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.092 4.092 4 C -0.101 4.101 5 C 0.252 3.748 6 H 0.011 0.989 7 O -0.578 6.578 8 C -0.565 4.565 9 H 0.059 0.941 10 C 0.021 3.979 11 N -0.902 5.902 12 Si 0.952 3.048 13 H -0.267 1.267 14 H -0.288 1.288 15 H -0.270 1.270 16 C -0.128 4.128 17 C -0.135 4.135 18 C -0.130 4.130 19 H 0.052 0.948 20 H 0.047 0.953 21 H 0.066 0.934 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.352 0.648 27 H 0.258 0.742 28 H 0.101 0.899 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.874 -10.909 0.822 12.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.130 4.130 4 C -0.101 4.101 5 C 0.194 3.806 6 H 0.028 0.972 7 O -0.382 6.382 8 C -0.603 4.603 9 H 0.078 0.922 10 C -0.180 4.180 11 N -0.540 5.540 12 Si 0.777 3.223 13 H -0.192 1.192 14 H -0.213 1.213 15 H -0.195 1.195 16 C -0.165 4.165 17 C -0.173 4.173 18 C -0.167 4.167 19 H 0.071 0.929 20 H 0.066 0.934 21 H 0.085 0.915 22 H 0.088 0.912 23 H 0.082 0.918 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.197 0.803 27 H 0.066 0.934 28 H 0.119 0.881 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.152 -10.697 1.035 11.918 hybrid contribution -0.315 0.944 -1.030 1.432 sum -5.467 -9.753 0.005 11.181 Atomic orbital electron populations 1.21761 0.95308 1.01969 1.01554 1.21646 0.96063 0.95867 1.02135 1.21275 0.93721 0.97275 1.00725 1.22450 0.95708 0.95404 0.96571 1.18970 0.91298 0.84367 0.85924 0.97159 1.86476 1.24263 1.71233 1.56241 1.21941 1.39393 0.98549 1.00384 0.92248 1.25884 0.94306 0.97733 1.00111 1.70238 1.39597 1.08477 1.35719 0.85736 0.78932 0.77152 0.80502 1.19219 1.21348 1.19549 1.22996 0.98361 0.98552 0.96603 1.22705 0.96526 1.00946 0.97101 1.23019 0.98271 0.99274 0.96132 0.92852 0.93396 0.91477 0.91199 0.91768 0.93378 0.93087 0.80342 0.93354 0.88131 0.93681 0.92729 0.89630 0.93883 0.88227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.91 71.98 0.71 -2.67 16 2 C -0.12 -3.18 5.01 30.59 0.15 -3.03 16 3 C -0.09 -3.23 4.29 30.59 0.13 -3.09 16 4 C -0.10 -3.98 0.59 -51.66 -0.03 -4.01 16 5 C 0.25 12.99 2.35 29.85 0.07 13.06 16 6 H 0.01 0.62 7.30 -2.38 -0.02 0.61 16 7 O -0.58 -31.10 12.42 -148.98 -1.85 -32.95 16 8 C -0.56 -31.01 7.58 25.60 0.19 -30.81 16 9 H 0.06 3.16 7.14 -2.91 -0.02 3.14 16 10 C 0.02 1.19 5.38 84.66 0.46 1.65 16 11 N -0.90 -55.12 12.63 21.45 0.27 -54.85 16 12 Si 0.95 44.10 29.54 68.60 2.03 46.12 16 13 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 14 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 15 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 16 C -0.13 -4.53 6.83 31.12 0.21 -4.31 16 17 C -0.14 -4.49 7.73 31.12 0.24 -4.25 16 18 C -0.13 -4.46 7.04 31.12 0.22 -4.24 16 19 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 20 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 21 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 22 H 0.07 1.70 6.04 -2.39 -0.01 1.69 16 23 H 0.06 1.66 6.36 -2.38 -0.02 1.64 16 24 H 0.05 1.88 6.95 -2.39 -0.02 1.86 16 25 H 0.05 1.77 7.37 -2.39 -0.02 1.76 16 26 H 0.35 17.07 7.75 -74.06 -0.57 16.49 16 27 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 28 H 0.10 2.96 5.70 -2.39 -0.01 2.94 16 29 H 0.04 1.81 7.79 -2.39 -0.02 1.79 16 30 H 0.05 2.04 7.60 -2.39 -0.02 2.02 16 31 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.04 1.64 8.10 -2.39 -0.02 1.62 16 33 H 0.10 2.81 6.03 -2.39 -0.01 2.80 16 Total: -1.00 -63.50 257.63 3.32 -60.18 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.51 Total: 23.19 kcal Atomic # 6 Polarization: -44.06 SS G_CDS: 2.36 Total: -41.70 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.27 Total: -54.85 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -1.85 Total: -32.95 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -63.50 3.32 -60.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686137284.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.636 kcal (2) G-P(sol) polarization free energy of solvation -63.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds