Wall clock time and date at job start Mon Mar 30 2020 01:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47247 * 2 1 4 4 C 1.53000 * 109.46919 * 174.62294 * 3 2 1 5 5 C 1.53007 * 112.84804 * 173.77773 * 4 3 2 6 6 H 1.09003 * 109.46932 * 184.74864 * 5 4 3 7 7 O 1.42904 * 109.47002 * 304.74251 * 5 4 3 8 8 C 1.50697 * 109.47206 * 64.74789 * 5 4 3 9 9 H 1.07994 * 120.00094 * 354.82095 * 8 5 4 10 10 C 1.37878 * 119.99765 * 174.82460 * 8 5 4 11 11 N 1.31513 * 120.00173 * 359.97438 * 10 8 5 12 12 Si 1.86800 * 119.99563 * 180.02562 * 10 8 5 13 13 H 1.48497 * 109.47443 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.46924 * 119.99941 * 12 10 8 15 15 H 1.48506 * 109.46830 * 239.99318 * 12 10 8 16 16 C 1.53785 * 113.61597 * 42.47431 * 4 3 2 17 17 C 1.53785 * 87.08023 * 220.01896 * 16 4 3 18 18 C 1.53778 * 113.61575 * 304.97163 * 4 3 2 19 19 H 1.09004 * 109.46695 * 299.99848 * 1 2 3 20 20 H 1.08997 * 109.47052 * 59.99520 * 1 2 3 21 21 H 1.08995 * 109.47129 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46897 * 120.00204 * 2 1 3 23 23 H 1.08996 * 109.46843 * 239.99871 * 2 1 3 24 24 H 1.08997 * 109.47202 * 294.62525 * 3 2 1 25 25 H 1.09003 * 109.47062 * 54.62961 * 3 2 1 26 26 H 0.96702 * 113.99584 * 60.00033 * 7 5 4 27 27 H 0.96999 * 119.99839 * 180.02562 * 11 10 8 28 28 H 1.09003 * 113.61260 * 334.56206 * 16 4 3 29 29 H 1.08995 * 113.61447 * 105.46798 * 16 4 3 30 30 H 1.09005 * 113.60614 * 270.88192 * 17 16 4 31 31 H 1.08997 * 113.61272 * 139.98133 * 17 16 4 32 32 H 1.08994 * 113.61684 * 254.52646 * 18 4 3 33 33 H 1.08993 * 113.61563 * 25.35302 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5641 1.4445 0.1352 5 6 4.1714 2.8415 -0.0083 6 1 5.2588 2.7688 0.0124 7 8 3.7560 3.4164 -1.2489 8 6 3.7043 3.7116 1.1301 9 1 2.9762 3.3357 1.8335 10 6 4.2066 4.9876 1.2734 11 7 5.0937 5.4452 0.4171 12 14 3.6282 6.0658 2.6849 13 1 2.6352 5.3223 3.5012 14 1 4.7895 6.4359 3.5332 15 1 2.9997 7.2969 2.1419 16 6 4.2603 0.3768 -0.7252 17 6 5.2054 0.1461 0.4658 18 6 4.0745 0.6742 1.3643 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5139 0.8900 23 1 1.8933 -0.5138 -0.8899 24 1 1.7575 1.9278 -0.9342 25 1 1.6003 1.9833 0.8380 26 1 2.7977 3.5114 -1.3370 27 1 5.4473 6.3428 0.5182 28 1 3.6276 -0.4811 -0.9530 29 1 4.7585 0.7824 -1.6058 30 1 6.0878 0.7859 0.4531 31 1 5.4447 -0.9035 0.6364 32 1 4.4229 1.3197 2.1705 33 1 3.3905 -0.1014 1.7086 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686137287.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:09 Heat of formation + Delta-G solvation = -52.406286 kcal Electronic energy + Delta-G solvation = -13470.481843 eV Core-core repulsion = 11303.141278 eV Total energy + Delta-G solvation = -2167.340565 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.26385 -34.68222 -33.51115 -32.09023 -28.27819 -26.54683 -24.84153 -23.50190 -21.27312 -21.07859 -17.14656 -16.78690 -15.21624 -14.81407 -14.67113 -14.35573 -13.59193 -12.91467 -12.67105 -12.39240 -12.30660 -11.86831 -11.53980 -11.02187 -10.92202 -10.79239 -10.61897 -10.55337 -10.10229 -10.07330 -9.99074 -9.38903 -9.19066 -8.70871 -8.47702 -7.97169 -5.96326 -4.11590 3.28957 3.37454 3.40693 4.42730 5.27266 5.31281 5.35088 5.43162 5.47371 5.57596 5.68094 5.69310 6.09708 6.16293 6.20644 6.26401 6.34922 6.38718 6.49768 6.61188 6.63652 6.68550 6.80290 6.84413 7.07840 7.21083 7.31737 7.82381 7.94319 8.29042 8.93327 9.44275 9.64326 11.08845 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034290 B = 0.012072 C = 0.010786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.362215 B = 2318.842507 C = 2595.412349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C -0.097 4.097 4 C -0.093 4.093 5 C 0.250 3.750 6 H 0.059 0.941 7 O -0.569 6.569 8 C -0.556 4.556 9 H 0.057 0.943 10 C 0.076 3.924 11 N -0.866 5.866 12 Si 0.885 3.115 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.142 4.142 17 C -0.140 4.140 18 C -0.130 4.130 19 H 0.051 0.949 20 H 0.051 0.949 21 H 0.045 0.955 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.343 0.657 27 H 0.259 0.741 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.936 -9.066 0.118 10.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.134 4.134 4 C -0.094 4.094 5 C 0.193 3.807 6 H 0.077 0.923 7 O -0.372 6.372 8 C -0.594 4.594 9 H 0.076 0.924 10 C -0.129 4.129 11 N -0.503 5.503 12 Si 0.713 3.287 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.179 4.179 17 C -0.178 4.178 18 C -0.167 4.167 19 H 0.070 0.930 20 H 0.070 0.930 21 H 0.064 0.936 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.187 0.813 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.160 -8.910 -0.038 9.834 hybrid contribution -0.840 0.660 0.977 1.447 sum -5.000 -8.250 0.939 9.693 Atomic orbital electron populations 1.21786 0.96828 1.00570 1.01621 1.21717 0.94740 0.98553 1.01466 1.21318 0.95589 0.94848 1.01666 1.22635 0.94167 0.97644 0.94910 1.19179 0.94700 0.84307 0.82486 0.92326 1.86563 1.24865 1.85341 1.40468 1.21672 1.26038 0.99148 1.12584 0.92441 1.25059 0.94369 0.98030 0.95433 1.70069 1.28315 1.16909 1.34963 0.86672 0.78692 0.80695 0.82658 1.19718 1.21017 1.21009 1.23105 0.98519 0.99011 0.97277 1.22755 0.97727 0.99387 0.97900 1.22919 0.97203 0.98873 0.97734 0.92974 0.93028 0.93627 0.92184 0.92349 0.92590 0.91606 0.81284 0.93144 0.91073 0.92038 0.90450 0.93077 0.90904 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.13 -1.88 5.00 -26.73 -0.13 -2.01 16 3 C -0.10 -1.74 4.39 -26.73 -0.12 -1.86 16 4 C -0.09 -1.87 0.61 -153.69 -0.09 -1.96 16 5 C 0.25 6.30 2.21 -27.88 -0.06 6.24 16 6 H 0.06 1.66 7.31 -51.93 -0.38 1.28 16 7 O -0.57 -14.79 12.96 -35.23 -0.46 -15.25 16 8 C -0.56 -15.04 7.65 -34.44 -0.26 -15.30 16 9 H 0.06 1.53 7.04 -52.49 -0.37 1.16 16 10 C 0.08 2.14 5.42 -17.82 -0.10 2.04 16 11 N -0.87 -25.81 13.05 55.43 0.72 -25.09 16 12 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 13 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 C -0.14 -2.56 6.97 -25.91 -0.18 -2.74 16 17 C -0.14 -2.46 7.73 -25.91 -0.20 -2.66 16 18 C -0.13 -2.42 6.87 -25.92 -0.18 -2.60 16 19 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 20 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 21 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.88 6.03 -51.93 -0.31 0.56 16 23 H 0.06 0.83 6.37 -51.93 -0.33 0.50 16 24 H 0.06 1.01 6.73 -51.93 -0.35 0.66 16 25 H 0.07 1.27 7.30 -51.93 -0.38 0.89 16 26 H 0.34 7.95 7.36 45.56 0.34 8.28 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.07 1.13 5.70 -51.93 -0.30 0.84 16 29 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 30 H 0.08 1.45 7.61 -51.93 -0.40 1.06 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.49 7.63 -51.93 -0.40 1.10 16 33 H 0.07 1.11 6.03 -51.93 -0.31 0.80 16 LS Contribution 257.74 15.07 3.88 3.88 Total: -1.00 -29.43 257.74 -6.26 -35.69 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -4.43 Total: 6.90 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: -0.96 Total: -22.43 kcal Atomic # 7 Polarization: -25.81 SS G_CDS: 0.72 Total: -25.09 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.46 Total: -15.25 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.43 -6.26 -35.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686137287.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.721 kcal (2) G-P(sol) polarization free energy of solvation -29.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds