Wall clock time and date at job start Mon Mar 30 2020 01:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47247 * 2 1 4 4 C 1.53000 * 109.46919 * 174.62294 * 3 2 1 5 5 C 1.53007 * 112.84804 * 173.77773 * 4 3 2 6 6 H 1.09003 * 109.46932 * 184.74864 * 5 4 3 7 7 O 1.42904 * 109.47002 * 304.74251 * 5 4 3 8 8 C 1.50697 * 109.47206 * 64.74789 * 5 4 3 9 9 H 1.07994 * 120.00094 * 354.82095 * 8 5 4 10 10 C 1.37878 * 119.99765 * 174.82460 * 8 5 4 11 11 N 1.31513 * 120.00173 * 359.97438 * 10 8 5 12 12 Si 1.86800 * 119.99563 * 180.02562 * 10 8 5 13 13 H 1.48497 * 109.47443 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.46924 * 119.99941 * 12 10 8 15 15 H 1.48506 * 109.46830 * 239.99318 * 12 10 8 16 16 C 1.53785 * 113.61597 * 42.47431 * 4 3 2 17 17 C 1.53785 * 87.08023 * 220.01896 * 16 4 3 18 18 C 1.53778 * 113.61575 * 304.97163 * 4 3 2 19 19 H 1.09004 * 109.46695 * 299.99848 * 1 2 3 20 20 H 1.08997 * 109.47052 * 59.99520 * 1 2 3 21 21 H 1.08995 * 109.47129 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46897 * 120.00204 * 2 1 3 23 23 H 1.08996 * 109.46843 * 239.99871 * 2 1 3 24 24 H 1.08997 * 109.47202 * 294.62525 * 3 2 1 25 25 H 1.09003 * 109.47062 * 54.62961 * 3 2 1 26 26 H 0.96702 * 113.99584 * 60.00033 * 7 5 4 27 27 H 0.96999 * 119.99839 * 180.02562 * 11 10 8 28 28 H 1.09003 * 113.61260 * 334.56206 * 16 4 3 29 29 H 1.08995 * 113.61447 * 105.46798 * 16 4 3 30 30 H 1.09005 * 113.60614 * 270.88192 * 17 16 4 31 31 H 1.08997 * 113.61272 * 139.98133 * 17 16 4 32 32 H 1.08994 * 113.61684 * 254.52646 * 18 4 3 33 33 H 1.08993 * 113.61563 * 25.35302 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5641 1.4445 0.1352 5 6 4.1714 2.8415 -0.0083 6 1 5.2588 2.7688 0.0124 7 8 3.7560 3.4164 -1.2489 8 6 3.7043 3.7116 1.1301 9 1 2.9762 3.3357 1.8335 10 6 4.2066 4.9876 1.2734 11 7 5.0937 5.4452 0.4171 12 14 3.6282 6.0658 2.6849 13 1 2.6352 5.3223 3.5012 14 1 4.7895 6.4359 3.5332 15 1 2.9997 7.2969 2.1419 16 6 4.2603 0.3768 -0.7252 17 6 5.2054 0.1461 0.4658 18 6 4.0745 0.6742 1.3643 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5139 0.8900 23 1 1.8933 -0.5138 -0.8899 24 1 1.7575 1.9278 -0.9342 25 1 1.6003 1.9833 0.8380 26 1 2.7977 3.5114 -1.3370 27 1 5.4473 6.3428 0.5182 28 1 3.6276 -0.4811 -0.9530 29 1 4.7585 0.7824 -1.6058 30 1 6.0878 0.7859 0.4531 31 1 5.4447 -0.9035 0.6364 32 1 4.4229 1.3197 2.1705 33 1 3.3905 -0.1014 1.7086 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686137287.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:09 Heat of formation + Delta-G solvation = -71.448753 kcal Electronic energy + Delta-G solvation = -13471.307586 eV Core-core repulsion = 11303.141278 eV Total energy + Delta-G solvation = -2168.166308 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.84233 -36.65820 -34.74175 -34.24282 -29.95860 -28.23959 -26.35117 -25.29803 -22.86336 -22.42059 -18.96032 -18.70297 -16.80768 -16.68800 -16.27687 -15.87859 -15.35865 -14.63629 -14.21973 -13.92943 -13.78062 -13.32594 -13.19805 -12.85437 -12.58504 -12.52751 -12.11106 -11.96576 -11.87295 -11.63998 -11.36164 -11.02676 -10.78042 -10.64190 -10.44123 -9.91007 -8.11296 -6.33179 1.37653 1.39330 1.51075 2.39699 3.14903 3.89092 3.91735 3.99778 4.11301 4.21996 4.28308 4.47976 4.58190 4.85934 4.91160 4.94422 5.00804 5.03273 5.07577 5.17322 5.23808 5.34105 5.35179 5.49083 5.56813 5.64278 5.70504 5.78499 5.96392 6.20254 6.80455 7.37448 7.56974 8.94374 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034290 B = 0.012072 C = 0.010786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.362215 B = 2318.842507 C = 2595.412349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.092 4.092 4 C -0.101 4.101 5 C 0.250 3.750 6 H 0.016 0.984 7 O -0.587 6.587 8 C -0.559 4.559 9 H 0.060 0.940 10 C 0.019 3.981 11 N -0.909 5.909 12 Si 0.954 3.046 13 H -0.262 1.262 14 H -0.282 1.282 15 H -0.282 1.282 16 C -0.132 4.132 17 C -0.136 4.136 18 C -0.126 4.126 19 H 0.048 0.952 20 H 0.052 0.948 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.354 0.646 27 H 0.259 0.741 28 H 0.103 0.897 29 H 0.041 0.959 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.440 -10.740 0.815 12.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.129 4.129 4 C -0.102 4.102 5 C 0.193 3.807 6 H 0.034 0.966 7 O -0.392 6.392 8 C -0.597 4.597 9 H 0.078 0.922 10 C -0.182 4.182 11 N -0.548 5.548 12 Si 0.779 3.221 13 H -0.186 1.186 14 H -0.207 1.207 15 H -0.207 1.207 16 C -0.169 4.169 17 C -0.173 4.173 18 C -0.163 4.163 19 H 0.067 0.933 20 H 0.071 0.929 21 H 0.085 0.915 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.199 0.801 27 H 0.068 0.932 28 H 0.122 0.878 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.064 0.936 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.679 -10.597 0.667 12.041 hybrid contribution -0.356 1.177 0.723 1.427 sum -6.035 -9.419 1.391 11.273 Atomic orbital electron populations 1.21763 0.95288 1.01984 1.01569 1.21650 0.96078 0.95792 1.02212 1.21263 0.93742 0.97309 1.00598 1.22442 0.95624 0.95149 0.96939 1.19011 0.92680 0.87362 0.81659 0.96636 1.86495 1.25931 1.85949 1.40818 1.21991 1.25390 0.99435 1.12851 0.92170 1.25922 0.94528 0.99716 0.98011 1.70212 1.30015 1.17362 1.37217 0.85587 0.78319 0.78706 0.79449 1.18564 1.20742 1.20743 1.23088 0.98481 0.99027 0.96270 1.22702 0.96544 1.00887 0.97182 1.22932 0.98046 0.98955 0.96344 0.93295 0.92933 0.91468 0.91506 0.91340 0.93146 0.93353 0.80066 0.93219 0.87849 0.93986 0.92862 0.89628 0.93580 0.88438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.91 71.98 0.71 -2.61 16 2 C -0.12 -3.13 5.00 30.59 0.15 -2.98 16 3 C -0.09 -3.16 4.39 30.59 0.13 -3.02 16 4 C -0.10 -3.99 0.61 -51.65 -0.03 -4.02 16 5 C 0.25 12.92 2.21 29.85 0.07 12.99 16 6 H 0.02 0.94 7.31 -2.39 -0.02 0.92 16 7 O -0.59 -31.35 12.96 -148.98 -1.93 -33.28 16 8 C -0.56 -30.70 7.65 25.60 0.20 -30.50 16 9 H 0.06 3.21 7.04 -2.91 -0.02 3.19 16 10 C 0.02 1.09 5.42 84.66 0.46 1.55 16 11 N -0.91 -55.77 13.05 21.45 0.28 -55.49 16 12 Si 0.95 44.21 29.54 68.60 2.03 46.24 16 13 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 14 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 15 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 16 C -0.13 -4.53 6.97 31.12 0.22 -4.31 16 17 C -0.14 -4.57 7.73 31.12 0.24 -4.33 16 18 C -0.13 -4.50 6.87 31.12 0.21 -4.29 16 19 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 20 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 21 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.07 1.67 6.03 -2.38 -0.01 1.65 16 23 H 0.07 1.67 6.37 -2.39 -0.02 1.65 16 24 H 0.05 1.76 6.73 -2.39 -0.02 1.75 16 25 H 0.05 1.81 7.30 -2.39 -0.02 1.79 16 26 H 0.35 16.73 7.36 -74.06 -0.55 16.18 16 27 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 28 H 0.10 2.91 5.70 -2.39 -0.01 2.89 16 29 H 0.04 1.60 8.10 -2.39 -0.02 1.58 16 30 H 0.05 2.03 7.61 -2.38 -0.02 2.01 16 31 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.05 1.88 7.63 -2.39 -0.02 1.86 16 33 H 0.10 2.90 6.03 -2.39 -0.01 2.89 16 Total: -1.00 -64.11 257.74 3.28 -60.83 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.54 Total: 23.23 kcal Atomic # 6 Polarization: -43.89 SS G_CDS: 2.36 Total: -41.53 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.28 Total: -55.49 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -1.93 Total: -33.28 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -64.11 3.28 -60.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686137287.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.620 kcal (2) G-P(sol) polarization free energy of solvation -64.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds