Wall clock time and date at job start Mon Mar 30 2020 01:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46720 * 2 1 4 4 C 1.52998 * 109.47322 * 120.00142 * 2 1 3 5 5 C 1.53002 * 112.84757 * 309.66767 * 4 2 1 6 6 H 1.09000 * 109.47312 * 58.47072 * 5 4 2 7 7 O 1.42905 * 109.47079 * 298.46902 * 5 4 2 8 8 C 1.50701 * 109.47097 * 178.47170 * 5 4 2 9 9 H 1.07999 * 119.99742 * 359.97438 * 8 5 4 10 10 C 1.37878 * 120.00001 * 179.97438 * 8 5 4 11 11 N 1.31507 * 120.00096 * 0.02562 * 10 8 5 12 12 Si 1.86803 * 119.99524 * 179.97438 * 10 8 5 13 13 H 1.48494 * 109.47605 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46815 * 120.00460 * 12 10 8 15 15 H 1.48499 * 109.46757 * 239.99935 * 12 10 8 16 16 C 1.53772 * 113.69115 * 80.93650 * 4 2 1 17 17 C 1.53779 * 87.08346 * 89.12559 * 16 4 2 18 18 C 1.53779 * 113.61414 * 178.47547 * 4 2 1 19 19 H 1.09005 * 109.47435 * 299.99723 * 1 2 3 20 20 H 1.08997 * 109.47297 * 59.99711 * 1 2 3 21 21 H 1.09000 * 109.47112 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.46839 * 240.00296 * 2 1 3 23 23 H 1.09004 * 109.46748 * 179.97438 * 3 2 1 24 24 H 1.08997 * 109.47471 * 300.00182 * 3 2 1 25 25 H 1.08996 * 109.47223 * 60.00531 * 3 2 1 26 26 H 0.96691 * 114.00079 * 299.99986 * 7 5 4 27 27 H 0.96997 * 119.99806 * 179.97438 * 11 10 8 28 28 H 1.09005 * 113.61290 * 203.67529 * 16 4 2 29 29 H 1.09003 * 113.61384 * 334.57554 * 16 4 2 30 30 H 1.08999 * 113.61432 * 270.88432 * 17 16 4 31 31 H 1.09007 * 113.61179 * 139.97645 * 17 16 4 32 32 H 1.08995 * 113.61820 * 25.34122 * 18 4 2 33 33 H 1.08998 * 113.61346 * 156.25351 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.3895 -0.2114 2.5368 6 1 0.3087 -0.3366 2.4721 7 8 1.6992 1.1727 2.7112 8 6 1.9167 -0.9958 3.7106 9 1 2.6427 -1.7799 3.5539 10 6 1.4721 -0.7126 4.9846 11 7 0.5877 0.2418 5.1754 12 14 2.1251 -1.6854 6.4395 13 1 3.1024 -2.6959 5.9609 14 1 2.7939 -0.7628 7.3918 15 1 0.9984 -2.3705 7.1226 16 6 2.0369 -2.2537 1.1224 17 6 3.4582 -2.1307 0.5483 18 6 3.5733 -0.8093 1.3268 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 3.1299 1.4426 0.0005 24 1 1.6765 1.9564 -0.8899 25 1 1.6766 1.9563 0.8900 26 1 2.6458 1.3588 2.7767 27 1 0.2746 0.4408 6.0717 28 1 1.9964 -2.7711 2.0810 29 1 1.3076 -2.6311 0.4055 30 1 3.4825 -2.0034 -0.5339 31 1 4.1397 -2.9054 0.9000 32 1 4.0845 -0.0206 0.7748 33 1 3.9529 -0.9318 2.3411 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686138952.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:10 Heat of formation + Delta-G solvation = -46.202167 kcal Electronic energy + Delta-G solvation = -13816.151695 eV Core-core repulsion = 11649.080161 eV Total energy + Delta-G solvation = -2167.071534 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.43211 -34.59244 -33.16226 -31.95173 -27.71247 -26.62879 -24.41965 -24.36430 -21.50216 -20.63214 -17.25417 -16.62782 -15.19578 -14.66780 -14.40708 -14.00622 -13.41875 -13.00980 -12.63488 -12.31256 -11.67228 -11.46057 -11.28586 -11.11901 -10.95861 -10.73982 -10.64681 -10.43442 -10.31852 -9.99686 -9.85540 -9.51906 -9.15799 -8.60075 -8.37014 -7.72701 -5.94160 -4.09168 3.28751 3.37695 3.40133 4.43316 5.28315 5.40140 5.42577 5.49377 5.58617 5.75623 5.92244 6.13085 6.23129 6.28340 6.33925 6.42601 6.43790 6.56455 6.63889 6.68851 6.75625 6.82373 6.87916 7.03681 7.20409 7.31486 7.40967 7.85632 7.96263 8.31656 8.93360 9.46935 9.67086 11.10048 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039564 B = 0.013650 C = 0.011769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.552441 B = 2050.848910 C = 2378.596558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.062 4.062 3 C -0.157 4.157 4 C -0.101 4.101 5 C 0.246 3.754 6 H 0.056 0.944 7 O -0.559 6.559 8 C -0.562 4.562 9 H 0.061 0.939 10 C 0.077 3.923 11 N -0.861 5.861 12 Si 0.882 3.118 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.285 1.285 16 C -0.124 4.124 17 C -0.146 4.146 18 C -0.128 4.128 19 H 0.068 0.932 20 H 0.039 0.961 21 H 0.046 0.954 22 H 0.047 0.953 23 H 0.043 0.957 24 H 0.033 0.967 25 H 0.092 0.908 26 H 0.342 0.658 27 H 0.257 0.743 28 H 0.095 0.905 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.245 -1.529 -7.821 8.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.080 4.080 3 C -0.214 4.214 4 C -0.102 4.102 5 C 0.188 3.812 6 H 0.074 0.926 7 O -0.361 6.361 8 C -0.600 4.600 9 H 0.079 0.921 10 C -0.128 4.128 11 N -0.498 5.498 12 Si 0.709 3.291 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.211 1.211 16 C -0.161 4.161 17 C -0.183 4.183 18 C -0.165 4.165 19 H 0.087 0.913 20 H 0.058 0.942 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.052 0.948 25 H 0.110 0.890 26 H 0.186 0.814 27 H 0.067 0.933 28 H 0.113 0.887 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.461 -1.381 -7.721 8.221 hybrid contribution 0.940 -0.747 0.855 1.474 sum 3.401 -2.128 -6.866 7.952 Atomic orbital electron populations 1.21826 0.95933 1.00971 1.01429 1.20710 0.95227 0.95913 0.96169 1.22096 1.00069 0.96639 1.02602 1.22557 0.95480 0.94743 0.97393 1.19242 0.95211 0.79010 0.87688 0.92620 1.86498 1.26369 1.27987 1.95290 1.21804 1.26357 1.19676 0.92128 0.92125 1.25042 0.94433 0.94487 0.98835 1.70083 1.29324 1.29066 1.21330 0.86732 0.78896 0.80211 0.83223 1.19803 1.21083 1.21082 1.22952 0.95041 0.97113 1.01007 1.22814 0.98297 0.98518 0.98677 1.22980 0.96930 0.95948 1.00671 0.91321 0.94204 0.93500 0.93466 0.93781 0.94817 0.88992 0.81435 0.93273 0.88709 0.93449 0.91736 0.92856 0.93095 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 8.61 37.16 0.32 -2.23 16 2 C -0.06 -1.10 2.37 -90.62 -0.21 -1.31 16 3 C -0.16 -2.68 8.62 37.16 0.32 -2.36 16 4 C -0.10 -2.00 0.37 -153.70 -0.06 -2.05 16 5 C 0.25 5.95 2.00 -27.88 -0.06 5.89 16 6 H 0.06 1.52 6.57 -51.93 -0.34 1.18 16 7 O -0.56 -13.75 9.70 -35.23 -0.34 -14.10 16 8 C -0.56 -14.76 6.98 -34.44 -0.24 -15.00 16 9 H 0.06 1.56 5.40 -52.49 -0.28 1.28 16 10 C 0.08 2.13 5.40 -17.82 -0.10 2.03 16 11 N -0.86 -25.22 12.84 55.43 0.71 -24.51 16 12 Si 0.88 21.04 29.54 -169.99 -5.02 16.02 16 13 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 16 C -0.12 -2.34 6.88 -25.92 -0.18 -2.52 16 17 C -0.15 -2.44 7.73 -25.92 -0.20 -2.64 16 18 C -0.13 -2.36 6.37 -25.92 -0.17 -2.52 16 19 H 0.07 1.38 6.57 -51.93 -0.34 1.04 16 20 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.05 0.80 7.96 -51.93 -0.41 0.39 16 22 H 0.05 0.79 7.34 -51.93 -0.38 0.41 16 23 H 0.04 0.71 6.53 -51.93 -0.34 0.37 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.09 1.77 5.49 -51.93 -0.29 1.48 16 26 H 0.34 7.73 8.68 45.56 0.40 8.13 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.09 1.97 6.20 -51.93 -0.32 1.65 16 29 H 0.05 0.83 7.92 -51.93 -0.41 0.42 16 30 H 0.06 0.99 7.64 -51.93 -0.40 0.59 16 31 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 32 H 0.05 0.87 6.49 -51.93 -0.34 0.53 16 33 H 0.09 1.85 6.44 -51.93 -0.33 1.52 16 LS Contribution 250.68 15.07 3.78 3.78 Total: -1.00 -28.18 250.68 -5.63 -33.81 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -4.19 Total: 7.72 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: -0.57 Total: -22.72 kcal Atomic # 7 Polarization: -25.22 SS G_CDS: 0.71 Total: -24.51 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.34 Total: -14.10 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -28.18 -5.63 -33.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686138952.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.391 kcal (2) G-P(sol) polarization free energy of solvation -28.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds