Wall clock time and date at job start Mon Mar 30 2020 01:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46720 * 2 1 4 4 C 1.52998 * 109.47322 * 120.00142 * 2 1 3 5 5 C 1.53002 * 112.84757 * 309.66767 * 4 2 1 6 6 H 1.09000 * 109.47312 * 58.47072 * 5 4 2 7 7 O 1.42905 * 109.47079 * 298.46902 * 5 4 2 8 8 C 1.50701 * 109.47097 * 178.47170 * 5 4 2 9 9 H 1.07999 * 119.99742 * 359.97438 * 8 5 4 10 10 C 1.37878 * 120.00001 * 179.97438 * 8 5 4 11 11 N 1.31507 * 120.00096 * 0.02562 * 10 8 5 12 12 Si 1.86803 * 119.99524 * 179.97438 * 10 8 5 13 13 H 1.48494 * 109.47605 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46815 * 120.00460 * 12 10 8 15 15 H 1.48499 * 109.46757 * 239.99935 * 12 10 8 16 16 C 1.53772 * 113.69115 * 80.93650 * 4 2 1 17 17 C 1.53779 * 87.08346 * 89.12559 * 16 4 2 18 18 C 1.53779 * 113.61414 * 178.47547 * 4 2 1 19 19 H 1.09005 * 109.47435 * 299.99723 * 1 2 3 20 20 H 1.08997 * 109.47297 * 59.99711 * 1 2 3 21 21 H 1.09000 * 109.47112 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.46839 * 240.00296 * 2 1 3 23 23 H 1.09004 * 109.46748 * 179.97438 * 3 2 1 24 24 H 1.08997 * 109.47471 * 300.00182 * 3 2 1 25 25 H 1.08996 * 109.47223 * 60.00531 * 3 2 1 26 26 H 0.96691 * 114.00079 * 299.99986 * 7 5 4 27 27 H 0.96997 * 119.99806 * 179.97438 * 11 10 8 28 28 H 1.09005 * 113.61290 * 203.67529 * 16 4 2 29 29 H 1.09003 * 113.61384 * 334.57554 * 16 4 2 30 30 H 1.08999 * 113.61432 * 270.88432 * 17 16 4 31 31 H 1.09007 * 113.61179 * 139.97645 * 17 16 4 32 32 H 1.08995 * 113.61820 * 25.34122 * 18 4 2 33 33 H 1.08998 * 113.61346 * 156.25351 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.3895 -0.2114 2.5368 6 1 0.3087 -0.3366 2.4721 7 8 1.6992 1.1727 2.7112 8 6 1.9167 -0.9958 3.7106 9 1 2.6427 -1.7799 3.5539 10 6 1.4721 -0.7126 4.9846 11 7 0.5877 0.2418 5.1754 12 14 2.1251 -1.6854 6.4395 13 1 3.1024 -2.6959 5.9609 14 1 2.7939 -0.7628 7.3918 15 1 0.9984 -2.3705 7.1226 16 6 2.0369 -2.2537 1.1224 17 6 3.4582 -2.1307 0.5483 18 6 3.5733 -0.8093 1.3268 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 3.1299 1.4426 0.0005 24 1 1.6765 1.9564 -0.8899 25 1 1.6766 1.9563 0.8900 26 1 2.6458 1.3588 2.7767 27 1 0.2746 0.4408 6.0717 28 1 1.9964 -2.7711 2.0810 29 1 1.3076 -2.6311 0.4055 30 1 3.4825 -2.0034 -0.5339 31 1 4.1397 -2.9054 0.9000 32 1 4.0845 -0.0206 0.7748 33 1 3.9529 -0.9318 2.3411 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686138952.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:10 Heat of formation + Delta-G solvation = -63.964985 kcal Electronic energy + Delta-G solvation = -13816.921948 eV Core-core repulsion = 11649.080161 eV Total energy + Delta-G solvation = -2167.841788 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.99360 -36.46646 -34.71137 -33.94118 -29.55445 -28.11760 -26.19801 -25.84322 -23.26196 -22.08572 -19.06152 -18.42081 -16.88357 -16.38076 -16.12847 -15.77156 -15.21126 -14.51211 -14.14738 -13.93862 -13.50578 -13.00385 -12.84862 -12.80358 -12.77902 -12.50653 -12.16027 -11.95306 -11.83823 -11.66601 -11.57403 -11.08231 -10.71042 -10.59050 -10.22991 -9.56023 -8.04709 -6.25005 1.38202 1.41023 1.51116 2.42526 3.20888 3.89981 3.94423 4.02282 4.16173 4.34225 4.48929 4.59954 4.70665 4.87223 4.92797 4.94818 5.05181 5.12807 5.19936 5.26159 5.28988 5.31248 5.34314 5.58031 5.67326 5.73587 5.83209 5.93219 6.00860 6.29273 6.87190 7.44178 7.68095 8.99566 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039564 B = 0.013650 C = 0.011769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.552441 B = 2050.848910 C = 2378.596558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.060 4.060 3 C -0.152 4.152 4 C -0.102 4.102 5 C 0.248 3.752 6 H 0.015 0.985 7 O -0.570 6.570 8 C -0.561 4.561 9 H 0.065 0.935 10 C 0.022 3.978 11 N -0.905 5.905 12 Si 0.947 3.053 13 H -0.263 1.263 14 H -0.284 1.284 15 H -0.285 1.285 16 C -0.130 4.130 17 C -0.126 4.126 18 C -0.127 4.127 19 H 0.032 0.968 20 H 0.064 0.936 21 H 0.047 0.953 22 H 0.072 0.928 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.349 0.651 27 H 0.256 0.744 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.668 -2.348 -9.366 10.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.078 4.078 3 C -0.209 4.209 4 C -0.102 4.102 5 C 0.191 3.809 6 H 0.033 0.967 7 O -0.374 6.374 8 C -0.599 4.599 9 H 0.083 0.917 10 C -0.179 4.179 11 N -0.543 5.543 12 Si 0.773 3.227 13 H -0.187 1.187 14 H -0.210 1.210 15 H -0.211 1.211 16 C -0.168 4.168 17 C -0.163 4.163 18 C -0.164 4.164 19 H 0.052 0.948 20 H 0.083 0.917 21 H 0.066 0.934 22 H 0.090 0.910 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.194 0.806 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.900 -2.213 -9.274 10.301 hybrid contribution 0.462 -0.473 1.307 1.465 sum 4.362 -2.686 -7.967 9.472 Atomic orbital electron populations 1.21781 0.96290 1.00899 1.00878 1.20736 0.94948 0.96339 0.95808 1.22005 1.00725 0.95999 1.02180 1.22483 0.96303 0.95443 0.95997 1.19063 0.93262 0.78784 0.89778 0.96720 1.86470 1.27015 1.28244 1.95638 1.22183 1.25507 1.19331 0.92887 0.91713 1.25833 0.94820 0.95501 1.01761 1.70227 1.31201 1.31166 1.21722 0.85704 0.78272 0.78890 0.79861 1.18737 1.21001 1.21121 1.22917 0.97399 0.96064 1.00396 1.22743 0.96368 0.97423 0.99774 1.22897 0.95535 0.97827 1.00138 0.94845 0.91695 0.93391 0.90970 0.92649 0.92802 0.91786 0.80643 0.93523 0.91290 0.92195 0.89188 0.91704 0.91322 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.85 8.61 71.98 0.62 -4.23 16 2 C -0.06 -2.00 2.37 -10.79 -0.03 -2.02 16 3 C -0.15 -4.86 8.62 71.98 0.62 -4.24 16 4 C -0.10 -3.90 0.37 -51.66 -0.02 -3.92 16 5 C 0.25 12.27 2.00 29.85 0.06 12.33 16 6 H 0.02 0.86 6.57 -2.39 -0.02 0.84 16 7 O -0.57 -28.74 9.70 -148.98 -1.45 -30.19 16 8 C -0.56 -29.88 6.98 25.60 0.18 -29.70 16 9 H 0.06 3.34 5.40 -2.91 -0.02 3.32 16 10 C 0.02 1.22 5.40 84.66 0.46 1.67 16 11 N -0.90 -54.48 12.84 21.45 0.28 -54.21 16 12 Si 0.95 43.76 29.54 68.60 2.03 45.79 16 13 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 14 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 15 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 16 C -0.13 -4.70 6.88 31.12 0.21 -4.48 16 17 C -0.13 -3.76 7.73 31.12 0.24 -3.52 16 18 C -0.13 -4.38 6.37 31.12 0.20 -4.18 16 19 H 0.03 1.36 6.57 -2.38 -0.02 1.35 16 20 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 21 H 0.05 1.59 7.96 -2.39 -0.02 1.58 16 22 H 0.07 2.10 7.34 -2.39 -0.02 2.08 16 23 H 0.05 1.62 6.53 -2.39 -0.02 1.60 16 24 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.06 2.43 5.49 -2.39 -0.01 2.41 16 26 H 0.35 16.04 8.68 -74.06 -0.64 15.40 16 27 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 28 H 0.07 2.83 6.20 -2.38 -0.01 2.82 16 29 H 0.06 1.98 7.92 -2.39 -0.02 1.96 16 30 H 0.09 2.29 7.64 -2.39 -0.02 2.27 16 31 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.07 2.12 6.49 -2.39 -0.02 2.10 16 33 H 0.07 2.70 6.44 -2.39 -0.02 2.68 16 Total: -1.00 -60.89 250.68 3.85 -57.04 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.45 Total: 23.86 kcal Atomic # 6 Polarization: -44.83 SS G_CDS: 2.54 Total: -42.29 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: 0.28 Total: -54.21 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -1.45 Total: -30.19 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -60.89 3.85 -57.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686138952.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.925 kcal (2) G-P(sol) polarization free energy of solvation -60.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds