Wall clock time and date at job start Mon Mar 30 2020 01:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47250 * 2 1 4 4 C 1.52996 * 109.47165 * 119.99731 * 2 1 3 5 5 C 1.52997 * 112.85170 * 293.67188 * 4 2 1 6 6 H 1.09000 * 109.46968 * 295.81788 * 5 4 2 7 7 O 1.42902 * 109.47199 * 55.82174 * 5 4 2 8 8 C 1.50703 * 109.47359 * 175.82258 * 5 4 2 9 9 H 1.08002 * 119.99931 * 359.97438 * 8 5 4 10 10 C 1.37870 * 120.00386 * 179.97438 * 8 5 4 11 11 N 1.31519 * 120.00081 * 0.27384 * 10 8 5 12 12 Si 1.86799 * 120.00367 * 180.02562 * 10 8 5 13 13 H 1.48504 * 109.46890 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47562 * 119.99981 * 12 10 8 15 15 H 1.48500 * 109.47296 * 239.99972 * 12 10 8 16 16 C 1.53780 * 113.68929 * 64.94036 * 4 2 1 17 17 C 1.53790 * 87.08238 * 89.12900 * 16 4 2 18 18 C 1.53778 * 87.08019 * 25.43079 * 17 16 4 19 19 H 1.09002 * 109.46608 * 308.87030 * 1 2 3 20 20 H 1.08994 * 109.47012 * 68.86605 * 1 2 3 21 21 H 1.08998 * 109.47192 * 188.87182 * 1 2 3 22 22 H 1.08998 * 109.47012 * 240.00228 * 2 1 3 23 23 H 1.08994 * 109.47204 * 59.99740 * 3 2 1 24 24 H 1.09002 * 109.47315 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.47097 * 300.00004 * 3 2 1 26 26 H 0.96699 * 113.99410 * 59.99990 * 7 5 4 27 27 H 0.97000 * 119.99431 * 359.72598 * 11 10 8 28 28 H 1.09005 * 113.61737 * 203.67117 * 16 4 2 29 29 H 1.08995 * 113.61372 * 334.57969 * 16 4 2 30 30 H 1.09000 * 113.60962 * 270.88442 * 17 16 4 31 31 H 1.08994 * 113.61557 * 139.98526 * 17 16 4 32 32 H 1.08994 * 113.61600 * 220.02013 * 18 17 16 33 33 H 1.09000 * 113.61190 * 89.11992 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.7043 0.0227 2.5434 6 1 2.2202 0.9829 2.5547 7 8 0.2936 0.2389 2.6164 8 6 2.1483 -0.8000 3.7254 9 1 2.6221 -1.7579 3.5692 10 6 1.9497 -0.3299 5.0062 11 7 1.3679 0.8341 5.1966 12 14 2.5008 -1.3493 6.4713 13 1 3.1176 -2.6122 5.9916 14 1 3.4953 -0.5815 7.2627 15 1 1.3269 -1.6651 7.3242 16 6 1.6836 -2.2166 1.2881 17 6 3.0024 -2.4699 0.5388 18 6 3.5122 -1.1551 1.1522 19 1 -0.3632 0.6450 0.8001 20 1 -0.3633 0.3705 -0.9585 21 1 -0.3633 -1.0153 0.1585 22 1 1.8933 -0.5138 -0.8900 23 1 1.6767 1.9564 0.8899 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 -0.2296 -0.5743 2.6108 27 1 1.0821 1.3636 4.4358 28 1 1.6659 -2.6353 2.2944 29 1 0.7962 -2.4692 0.7078 30 1 2.9017 -2.4355 -0.5460 31 1 3.5402 -3.3517 0.8871 32 1 4.1009 -0.5508 0.4622 33 1 3.9943 -1.2835 2.1212 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686138953.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:12 Heat of formation + Delta-G solvation = -52.202762 kcal Electronic energy + Delta-G solvation = -13868.631103 eV Core-core repulsion = 11701.299363 eV Total energy + Delta-G solvation = -2167.331739 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.54783 -34.95468 -33.27102 -31.91166 -27.53666 -26.72029 -24.47359 -24.07233 -21.66167 -20.71943 -17.67254 -16.72506 -15.41131 -14.77137 -14.44877 -13.72467 -13.63512 -13.09036 -12.69761 -12.39462 -11.75525 -11.66060 -11.34223 -11.20551 -10.87663 -10.73225 -10.52396 -10.44360 -10.33486 -10.11980 -9.83708 -9.55380 -9.24491 -8.61937 -8.32847 -7.71645 -6.26064 -4.07820 3.44292 3.47222 3.59952 4.55025 5.25599 5.31616 5.40277 5.46699 5.51597 5.67791 5.82860 6.03327 6.13986 6.18038 6.19874 6.26466 6.36426 6.47482 6.55487 6.58914 6.66371 6.70999 6.79234 6.94333 7.09878 7.21545 7.33917 7.64920 8.15286 8.46276 8.95376 9.21332 9.76106 11.12776 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039474 B = 0.013788 C = 0.011827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.154249 B = 2030.256880 C = 2366.970053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.063 4.063 3 C -0.143 4.143 4 C -0.096 4.096 5 C 0.230 3.770 6 H 0.047 0.953 7 O -0.576 6.576 8 C -0.639 4.639 9 H 0.055 0.945 10 C 0.032 3.968 11 N -0.899 5.899 12 Si 1.066 2.934 13 H -0.291 1.291 14 H -0.289 1.289 15 H -0.289 1.289 16 C -0.128 4.128 17 C -0.145 4.145 18 C -0.122 4.122 19 H 0.088 0.912 20 H 0.031 0.969 21 H 0.046 0.954 22 H 0.049 0.951 23 H 0.063 0.937 24 H 0.046 0.954 25 H 0.041 0.959 26 H 0.351 0.649 27 H 0.284 0.716 28 H 0.096 0.904 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.994 -3.720 -8.342 9.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.081 4.081 3 C -0.200 4.200 4 C -0.096 4.096 5 C 0.173 3.827 6 H 0.064 0.936 7 O -0.381 6.381 8 C -0.677 4.677 9 H 0.073 0.927 10 C -0.176 4.176 11 N -0.534 5.534 12 Si 0.896 3.104 13 H -0.217 1.217 14 H -0.215 1.215 15 H -0.215 1.215 16 C -0.165 4.165 17 C -0.182 4.182 18 C -0.160 4.160 19 H 0.107 0.893 20 H 0.051 0.949 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.082 0.918 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.196 0.804 27 H 0.096 0.904 28 H 0.115 0.885 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.246 -3.097 -6.694 7.481 hybrid contribution -0.046 -0.659 -1.750 1.871 sum 1.201 -3.756 -8.445 9.320 Atomic orbital electron populations 1.22077 0.95454 1.02182 1.01315 1.20727 0.95807 0.95373 0.96239 1.21804 1.00220 0.96667 1.01332 1.22425 0.95536 0.94904 0.96734 1.19371 0.78872 0.94847 0.89570 0.93559 1.86424 1.20215 1.35014 1.96437 1.22572 1.45214 1.07131 0.92788 0.92676 1.25691 0.94328 0.97290 1.00318 1.70571 1.35058 1.11352 1.36412 0.83608 0.76364 0.74988 0.75480 1.21669 1.21503 1.21504 1.23043 0.95498 0.96936 1.01019 1.22804 0.98794 0.98006 0.98638 1.22897 0.96406 0.95756 1.00914 0.89319 0.94942 0.93511 0.93278 0.91751 0.93498 0.93999 0.80407 0.90397 0.88537 0.93260 0.91719 0.92725 0.93413 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 8.19 37.16 0.30 -2.30 16 2 C -0.06 -1.11 2.34 -90.62 -0.21 -1.33 16 3 C -0.14 -2.48 8.68 37.16 0.32 -2.16 16 4 C -0.10 -1.89 0.36 -153.70 -0.06 -1.94 16 5 C 0.23 5.53 1.54 -27.88 -0.04 5.49 16 6 H 0.05 1.25 6.79 -51.93 -0.35 0.90 16 7 O -0.58 -13.82 8.79 -35.23 -0.31 -14.13 16 8 C -0.64 -16.95 7.00 -34.44 -0.24 -17.19 16 9 H 0.06 1.45 5.39 -52.49 -0.28 1.16 16 10 C 0.03 0.89 5.40 -17.82 -0.10 0.80 16 11 N -0.90 -27.14 13.53 55.43 0.75 -26.39 16 12 Si 1.07 25.00 29.90 -169.99 -5.08 19.91 16 13 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 15 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 16 C -0.13 -2.39 6.54 -25.91 -0.17 -2.56 16 17 C -0.14 -2.45 7.73 -25.92 -0.20 -2.65 16 18 C -0.12 -2.32 6.83 -25.92 -0.18 -2.50 16 19 H 0.09 1.67 5.73 -51.93 -0.30 1.38 16 20 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 21 H 0.05 0.76 6.49 -51.93 -0.34 0.43 16 22 H 0.05 0.82 7.32 -51.93 -0.38 0.44 16 23 H 0.06 1.25 6.72 -51.93 -0.35 0.91 16 24 H 0.05 0.79 7.60 -51.93 -0.39 0.39 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.35 7.84 8.65 45.56 0.39 8.23 16 27 H 0.28 8.72 6.47 -40.82 -0.26 8.45 16 28 H 0.10 2.01 6.01 -51.93 -0.31 1.69 16 29 H 0.05 0.85 6.65 -51.93 -0.35 0.51 16 30 H 0.06 1.00 7.62 -51.93 -0.40 0.60 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.84 7.60 -51.93 -0.39 0.45 16 33 H 0.09 1.95 6.64 -51.93 -0.34 1.60 16 LS Contribution 248.26 15.07 3.74 3.74 Total: -1.00 -28.44 248.26 -5.59 -34.03 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -4.12 Total: 9.16 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: -0.57 Total: -26.33 kcal Atomic # 7 Polarization: -27.14 SS G_CDS: 0.75 Total: -26.39 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.31 Total: -14.13 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.08 Total: 19.91 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -28.44 -5.59 -34.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686138953.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.175 kcal (2) G-P(sol) polarization free energy of solvation -28.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds