Wall clock time and date at job start Mon Mar 30 2020 01:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47250 * 2 1 4 4 C 1.52996 * 109.47165 * 119.99731 * 2 1 3 5 5 C 1.52997 * 112.85170 * 293.67188 * 4 2 1 6 6 H 1.09000 * 109.46968 * 295.81788 * 5 4 2 7 7 O 1.42902 * 109.47199 * 55.82174 * 5 4 2 8 8 C 1.50703 * 109.47359 * 175.82258 * 5 4 2 9 9 H 1.08002 * 119.99931 * 359.97438 * 8 5 4 10 10 C 1.37870 * 120.00386 * 179.97438 * 8 5 4 11 11 N 1.31519 * 120.00081 * 0.27384 * 10 8 5 12 12 Si 1.86799 * 120.00367 * 180.02562 * 10 8 5 13 13 H 1.48504 * 109.46890 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47562 * 119.99981 * 12 10 8 15 15 H 1.48500 * 109.47296 * 239.99972 * 12 10 8 16 16 C 1.53780 * 113.68929 * 64.94036 * 4 2 1 17 17 C 1.53790 * 87.08238 * 89.12900 * 16 4 2 18 18 C 1.53778 * 87.08019 * 25.43079 * 17 16 4 19 19 H 1.09002 * 109.46608 * 308.87030 * 1 2 3 20 20 H 1.08994 * 109.47012 * 68.86605 * 1 2 3 21 21 H 1.08998 * 109.47192 * 188.87182 * 1 2 3 22 22 H 1.08998 * 109.47012 * 240.00228 * 2 1 3 23 23 H 1.08994 * 109.47204 * 59.99740 * 3 2 1 24 24 H 1.09002 * 109.47315 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.47097 * 300.00004 * 3 2 1 26 26 H 0.96699 * 113.99410 * 59.99990 * 7 5 4 27 27 H 0.97000 * 119.99431 * 359.72598 * 11 10 8 28 28 H 1.09005 * 113.61737 * 203.67117 * 16 4 2 29 29 H 1.08995 * 113.61372 * 334.57969 * 16 4 2 30 30 H 1.09000 * 113.60962 * 270.88442 * 17 16 4 31 31 H 1.08994 * 113.61557 * 139.98526 * 17 16 4 32 32 H 1.08994 * 113.61600 * 220.02013 * 18 17 16 33 33 H 1.09000 * 113.61190 * 89.11992 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.7043 0.0227 2.5434 6 1 2.2202 0.9829 2.5547 7 8 0.2936 0.2389 2.6164 8 6 2.1483 -0.8000 3.7254 9 1 2.6221 -1.7579 3.5692 10 6 1.9497 -0.3299 5.0062 11 7 1.3679 0.8341 5.1966 12 14 2.5008 -1.3493 6.4713 13 1 3.1176 -2.6122 5.9916 14 1 3.4953 -0.5815 7.2627 15 1 1.3269 -1.6651 7.3242 16 6 1.6836 -2.2166 1.2881 17 6 3.0024 -2.4699 0.5388 18 6 3.5122 -1.1551 1.1522 19 1 -0.3632 0.6450 0.8001 20 1 -0.3633 0.3705 -0.9585 21 1 -0.3633 -1.0153 0.1585 22 1 1.8933 -0.5138 -0.8900 23 1 1.6767 1.9564 0.8899 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 -0.2296 -0.5743 2.6108 27 1 1.0821 1.3636 4.4358 28 1 1.6659 -2.6353 2.2944 29 1 0.7962 -2.4692 0.7078 30 1 2.9017 -2.4355 -0.5460 31 1 3.5402 -3.3517 0.8871 32 1 4.1009 -0.5508 0.4622 33 1 3.9943 -1.2835 2.1212 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686138953.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:12 Heat of formation + Delta-G solvation = -70.056154 kcal Electronic energy + Delta-G solvation = -13869.405284 eV Core-core repulsion = 11701.299363 eV Total energy + Delta-G solvation = -2168.105921 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.12771 -36.83105 -34.83076 -33.90691 -29.33257 -28.21483 -26.03678 -25.84621 -23.46555 -22.16828 -19.52832 -18.52263 -17.06405 -16.26797 -16.23347 -15.57571 -15.45500 -14.61465 -14.19713 -13.99858 -13.63730 -13.13755 -12.94656 -12.87527 -12.64680 -12.30637 -12.00452 -11.95102 -11.90467 -11.85084 -11.63239 -11.11315 -10.73702 -10.60364 -10.26954 -9.61337 -8.48237 -6.29920 1.52686 1.60813 1.75821 2.59267 3.26167 3.80297 3.84892 3.90436 4.07713 4.23849 4.30979 4.45889 4.59644 4.76896 4.84428 4.86643 4.96816 5.03534 5.11305 5.17060 5.19335 5.21834 5.26535 5.46918 5.58157 5.68363 5.77993 5.82801 6.11124 6.30757 6.71346 7.29922 7.63570 8.88025 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039474 B = 0.013788 C = 0.011827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.154249 B = 2030.256880 C = 2366.970053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.061 4.061 3 C -0.140 4.140 4 C -0.097 4.097 5 C 0.233 3.767 6 H 0.009 0.991 7 O -0.582 6.582 8 C -0.634 4.634 9 H 0.058 0.942 10 C -0.023 4.023 11 N -0.932 5.932 12 Si 1.112 2.888 13 H -0.270 1.270 14 H -0.286 1.286 15 H -0.285 1.285 16 C -0.128 4.128 17 C -0.125 4.125 18 C -0.129 4.129 19 H 0.062 0.938 20 H 0.055 0.945 21 H 0.052 0.948 22 H 0.074 0.926 23 H 0.030 0.970 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.357 0.643 27 H 0.267 0.733 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.343 -5.340 -9.992 11.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.079 4.079 3 C -0.198 4.198 4 C -0.097 4.097 5 C 0.176 3.824 6 H 0.026 0.974 7 O -0.387 6.387 8 C -0.672 4.672 9 H 0.076 0.924 10 C -0.224 4.224 11 N -0.570 5.570 12 Si 0.936 3.064 13 H -0.195 1.195 14 H -0.212 1.212 15 H -0.211 1.211 16 C -0.165 4.165 17 C -0.162 4.162 18 C -0.166 4.166 19 H 0.081 0.919 20 H 0.074 0.926 21 H 0.071 0.929 22 H 0.092 0.908 23 H 0.049 0.951 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.203 0.797 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.600 -4.731 -8.361 9.739 hybrid contribution -0.157 -0.126 -1.285 1.301 sum 1.443 -4.856 -9.646 10.896 Atomic orbital electron populations 1.21986 0.94913 1.02054 1.01582 1.20751 0.96247 0.95171 0.95738 1.21768 1.00340 0.96732 1.00913 1.22389 0.96528 0.95301 0.95478 1.19201 0.78535 0.93143 0.91530 0.97375 1.86407 1.20214 1.35420 1.96708 1.22935 1.43601 1.07041 0.93589 0.92412 1.27076 0.94047 0.97476 1.03818 1.70714 1.37957 1.12782 1.35529 0.82999 0.76224 0.74411 0.72763 1.19517 1.21211 1.21103 1.22948 0.97596 0.95586 1.00348 1.22736 0.96752 0.96918 0.99791 1.22861 0.95826 0.97744 1.00214 0.91946 0.92627 0.92898 0.90796 0.95057 0.93302 0.91473 0.79728 0.92264 0.91111 0.91459 0.89045 0.91602 0.92033 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.70 8.19 71.98 0.59 -4.11 16 2 C -0.06 -2.00 2.34 -10.79 -0.03 -2.02 16 3 C -0.14 -4.70 8.68 71.98 0.62 -4.08 16 4 C -0.10 -3.70 0.36 -51.66 -0.02 -3.72 16 5 C 0.23 11.43 1.54 29.85 0.05 11.47 16 6 H 0.01 0.48 6.79 -2.39 -0.02 0.46 16 7 O -0.58 -28.63 8.79 -148.98 -1.31 -29.94 16 8 C -0.63 -34.06 7.00 25.60 0.18 -33.88 16 9 H 0.06 3.03 5.39 -2.91 -0.02 3.02 16 10 C -0.02 -1.32 5.40 84.65 0.46 -0.87 16 11 N -0.93 -58.03 13.53 21.45 0.29 -57.74 16 12 Si 1.11 50.54 29.90 68.60 2.05 52.59 16 13 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 14 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 15 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 16 C -0.13 -4.48 6.54 31.12 0.20 -4.27 16 17 C -0.12 -3.76 7.73 31.12 0.24 -3.52 16 18 C -0.13 -4.68 6.83 31.12 0.21 -4.47 16 19 H 0.06 2.32 5.73 -2.39 -0.01 2.31 16 20 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 21 H 0.05 1.59 6.49 -2.39 -0.02 1.57 16 22 H 0.07 2.13 7.32 -2.39 -0.02 2.11 16 23 H 0.03 1.23 6.72 -2.39 -0.02 1.22 16 24 H 0.05 1.58 7.60 -2.39 -0.02 1.56 16 25 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.36 16.19 8.65 -74.06 -0.64 15.55 16 27 H 0.27 17.13 6.47 -92.71 -0.60 16.53 16 28 H 0.07 2.85 6.01 -2.38 -0.01 2.84 16 29 H 0.07 2.11 6.65 -2.39 -0.02 2.09 16 30 H 0.09 2.33 7.62 -2.39 -0.02 2.31 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.06 2.03 7.60 -2.39 -0.02 2.02 16 33 H 0.06 2.70 6.64 -2.39 -0.02 2.68 16 Total: -1.00 -61.94 248.26 4.17 -57.77 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.63 Total: 26.78 kcal Atomic # 6 Polarization: -51.97 SS G_CDS: 2.51 Total: -49.46 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 0.29 Total: -57.74 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -1.31 Total: -29.94 kcal Atomic # 14 Polarization: 50.54 SS G_CDS: 2.05 Total: 52.59 kcal Total: -61.94 4.17 -57.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686138953.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.283 kcal (2) G-P(sol) polarization free energy of solvation -61.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds