Wall clock time and date at job start Mon Mar 30 2020 02:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 119.99756 * 2 1 4 4 H 1.48499 * 109.47584 * 269.99981 * 3 2 1 5 5 H 1.48497 * 109.47273 * 30.00518 * 3 2 1 6 6 H 1.48503 * 109.46753 * 150.00186 * 3 2 1 7 7 C 1.37876 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00174 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00032 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46821 * 180.02562 * 10 9 7 12 12 N 1.46906 * 109.47141 * 179.97438 * 11 10 9 13 13 N 1.45402 * 111.00182 * 173.79231 * 12 11 10 14 14 C 1.48534 * 110.99864 * 8.55338 * 13 12 11 15 15 C 1.54932 * 103.22395 * 159.72162 * 14 13 12 16 16 C 1.54595 * 102.92410 * 322.58002 * 15 14 13 17 17 C 1.47897 * 110.99847 * 125.94880 * 13 12 11 18 18 H 0.97004 * 120.00039 * 359.97438 * 1 2 3 19 19 H 1.09008 * 109.46710 * 60.00325 * 9 7 2 20 20 H 1.09000 * 109.47209 * 300.00927 * 9 7 2 21 21 H 1.08995 * 109.46965 * 60.00429 * 10 9 7 22 22 H 1.09002 * 109.47075 * 299.99922 * 10 9 7 23 23 H 1.09005 * 109.47244 * 60.00533 * 11 10 9 24 24 H 1.08997 * 109.47445 * 300.00045 * 11 10 9 25 25 H 1.00898 * 110.99598 * 49.83851 * 12 11 10 26 26 H 1.09005 * 110.66435 * 278.15755 * 14 13 12 27 27 H 1.09002 * 110.67116 * 41.28249 * 14 13 12 28 28 H 1.09004 * 110.72023 * 204.22775 * 15 14 13 29 29 H 1.08997 * 110.72698 * 80.94554 * 15 14 13 30 30 H 1.08998 * 110.31204 * 263.04870 * 16 15 14 31 31 H 1.08997 * 110.30781 * 140.87698 * 16 15 14 32 32 H 1.09007 * 109.91692 * 333.50826 * 17 13 12 33 33 H 1.09000 * 109.91853 * 94.60495 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4349 -6.1037 -0.0018 13 7 1.7478 -7.3768 0.1444 14 6 0.2761 -7.2016 0.0464 15 6 -0.2274 -8.6239 -0.3058 16 6 0.8690 -9.1527 -1.2587 17 6 2.1167 -8.3063 -0.9453 18 1 -0.4850 0.8401 0.0004 19 1 0.6241 -2.5567 -0.8904 20 1 0.6246 -2.5571 0.8896 21 1 2.8719 -3.6043 0.8895 22 1 2.8720 -3.6043 -0.8905 23 1 0.8540 -5.0446 -0.8915 24 1 0.8533 -5.0451 0.8885 25 1 3.1316 -5.9841 0.7181 26 1 -0.1365 -6.8726 1.0001 27 1 0.0244 -6.4971 -0.7464 28 1 -1.1905 -8.5772 -0.8142 29 1 -0.2921 -9.2428 0.5891 30 1 0.5678 -9.0126 -2.2969 31 1 1.0668 -10.2061 -1.0603 32 1 2.4146 -7.7425 -1.8294 33 1 2.9347 -8.9504 -0.6228 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686777679.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:19 Heat of formation + Delta-G solvation = 17.606700 kcal Electronic energy + Delta-G solvation = -12519.432619 eV Core-core repulsion = 10387.420796 eV Total energy + Delta-G solvation = -2132.011823 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.76340 -35.19406 -33.14475 -31.20247 -29.01309 -28.05807 -25.57028 -23.05534 -20.99507 -20.52348 -19.64636 -16.68396 -16.32056 -15.97162 -14.88526 -14.45432 -14.33606 -13.46989 -13.07748 -12.54663 -12.29887 -12.12859 -11.70520 -11.54438 -11.34973 -11.14856 -10.85921 -10.75017 -10.55655 -10.32846 -9.78365 -9.61550 -9.22345 -9.04481 -8.34839 -7.70408 -5.99910 -4.02217 3.32676 3.38633 3.42278 3.62912 4.46259 4.49749 4.70242 4.91983 5.29531 5.34408 5.36044 5.49488 5.67588 5.73175 5.78764 5.80191 5.85400 5.99383 6.02678 6.15354 6.27026 6.61391 6.77608 6.80044 7.08862 7.49516 7.66741 7.70218 7.80739 7.99804 8.42801 9.04735 9.61920 11.11574 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.085047 B = 0.005705 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 329.148803 B = 4906.523966 C = 5111.223111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.107 4.107 11 C 0.040 3.960 12 N -0.544 5.544 13 N -0.366 5.366 14 C 0.009 3.991 15 C -0.123 4.123 16 C -0.132 4.132 17 C 0.040 3.960 18 H 0.260 0.740 19 H 0.015 0.985 20 H 0.014 0.986 21 H 0.048 0.952 22 H 0.056 0.944 23 H 0.069 0.931 24 H 0.036 0.964 25 H 0.353 0.647 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.940 -15.429 -0.931 15.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.089 4.089 12 N -0.267 5.267 13 N -0.180 5.180 14 C -0.119 4.119 15 C -0.162 4.162 16 C -0.171 4.171 17 C -0.088 4.088 18 H 0.070 0.930 19 H 0.034 0.966 20 H 0.033 0.967 21 H 0.067 0.933 22 H 0.075 0.925 23 H 0.087 0.913 24 H 0.054 0.946 25 H 0.172 0.828 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.997 -15.564 -1.094 15.634 hybrid contribution -0.082 1.400 0.146 1.410 sum 0.915 -14.164 -0.948 14.225 Atomic orbital electron populations 1.69967 1.06086 1.26598 1.50960 1.25028 0.94852 0.99294 0.95318 0.86580 0.79844 0.83392 0.78114 1.20646 1.21233 1.19849 1.21246 0.93079 0.90998 1.50469 0.92618 1.19053 0.93936 0.91265 0.97150 1.21638 0.99316 0.92718 1.00902 1.22524 0.95346 0.90785 1.00210 1.63785 1.14014 0.96488 1.52416 1.68070 1.03831 1.04671 1.41386 1.23658 0.88938 0.97367 1.01964 1.22452 0.98158 0.95981 0.99603 1.22429 0.95273 0.99844 0.99551 1.22833 0.97336 0.94446 0.94227 0.93013 0.96618 0.96714 0.93306 0.92509 0.91299 0.94602 0.82825 0.90007 0.91736 0.90974 0.90919 0.91527 0.91182 0.92359 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.11 -2.25 5.35 -26.73 -0.14 -2.39 16 11 C 0.04 0.73 4.59 -3.82 -0.02 0.71 16 12 N -0.54 -8.77 6.94 -10.36 -0.07 -8.84 16 13 N -0.37 -5.32 6.18 -110.08 -0.68 -6.00 16 14 C 0.01 0.12 5.24 -1.90 -0.01 0.11 16 15 C -0.12 -1.31 7.06 -24.87 -0.18 -1.49 16 16 C -0.13 -1.35 6.93 -25.37 -0.18 -1.53 16 17 C 0.04 0.51 6.97 -2.75 -0.02 0.49 16 18 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 19 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 20 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 21 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 22 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 23 H 0.07 1.27 6.47 -51.93 -0.34 0.94 16 24 H 0.04 0.65 7.07 -51.93 -0.37 0.29 16 25 H 0.35 5.43 8.89 -174.66 -1.55 3.87 16 26 H 0.08 1.12 7.64 -51.93 -0.40 0.73 16 27 H 0.06 0.95 5.89 -51.93 -0.31 0.65 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.79 8.00 -51.93 -0.42 0.38 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 266.24 15.07 4.01 4.01 Total: -1.00 -30.16 266.24 -8.84 -38.99 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -6.72 Total: -1.19 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -1.09 Total: -17.33 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: -0.02 Total: -41.34 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.16 -8.84 -38.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686777679.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.599 kcal (2) G-P(sol) polarization free energy of solvation -30.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds