Wall clock time and date at job start Mon Mar 30 2020 02:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 119.99756 * 2 1 4 4 H 1.48499 * 109.47584 * 269.99981 * 3 2 1 5 5 H 1.48497 * 109.47273 * 30.00518 * 3 2 1 6 6 H 1.48503 * 109.46753 * 150.00186 * 3 2 1 7 7 C 1.37876 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00174 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00032 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46821 * 180.02562 * 10 9 7 12 12 N 1.46906 * 109.47141 * 179.97438 * 11 10 9 13 13 N 1.45402 * 111.00182 * 173.79231 * 12 11 10 14 14 C 1.48534 * 110.99864 * 8.55338 * 13 12 11 15 15 C 1.54932 * 103.22395 * 159.72162 * 14 13 12 16 16 C 1.54595 * 102.92410 * 322.58002 * 15 14 13 17 17 C 1.47897 * 110.99847 * 125.94880 * 13 12 11 18 18 H 0.97004 * 120.00039 * 359.97438 * 1 2 3 19 19 H 1.09008 * 109.46710 * 60.00325 * 9 7 2 20 20 H 1.09000 * 109.47209 * 300.00927 * 9 7 2 21 21 H 1.08995 * 109.46965 * 60.00429 * 10 9 7 22 22 H 1.09002 * 109.47075 * 299.99922 * 10 9 7 23 23 H 1.09005 * 109.47244 * 60.00533 * 11 10 9 24 24 H 1.08997 * 109.47445 * 300.00045 * 11 10 9 25 25 H 1.00898 * 110.99598 * 49.83851 * 12 11 10 26 26 H 1.09005 * 110.66435 * 278.15755 * 14 13 12 27 27 H 1.09002 * 110.67116 * 41.28249 * 14 13 12 28 28 H 1.09004 * 110.72023 * 204.22775 * 15 14 13 29 29 H 1.08997 * 110.72698 * 80.94554 * 15 14 13 30 30 H 1.08998 * 110.31204 * 263.04870 * 16 15 14 31 31 H 1.08997 * 110.30781 * 140.87698 * 16 15 14 32 32 H 1.09007 * 109.91692 * 333.50826 * 17 13 12 33 33 H 1.09000 * 109.91853 * 94.60495 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4349 -6.1037 -0.0018 13 7 1.7478 -7.3768 0.1444 14 6 0.2761 -7.2016 0.0464 15 6 -0.2274 -8.6239 -0.3058 16 6 0.8690 -9.1527 -1.2587 17 6 2.1167 -8.3063 -0.9453 18 1 -0.4850 0.8401 0.0004 19 1 0.6241 -2.5567 -0.8904 20 1 0.6246 -2.5571 0.8896 21 1 2.8719 -3.6043 0.8895 22 1 2.8720 -3.6043 -0.8905 23 1 0.8540 -5.0446 -0.8915 24 1 0.8533 -5.0451 0.8885 25 1 3.1316 -5.9841 0.7181 26 1 -0.1365 -6.8726 1.0001 27 1 0.0244 -6.4971 -0.7464 28 1 -1.1905 -8.5772 -0.8142 29 1 -0.2921 -9.2428 0.5891 30 1 0.5678 -9.0126 -2.2969 31 1 1.0668 -10.2061 -1.0603 32 1 2.4146 -7.7425 -1.8294 33 1 2.9347 -8.9504 -0.6228 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686777679.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:19 Heat of formation + Delta-G solvation = -2.524608 kcal Electronic energy + Delta-G solvation = -12520.305578 eV Core-core repulsion = 10387.420796 eV Total energy + Delta-G solvation = -2132.884782 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.87015 -36.76229 -35.01005 -32.91243 -30.15426 -29.41596 -27.27528 -24.72279 -22.55304 -21.62770 -20.97364 -18.49019 -17.85349 -17.16356 -16.48789 -16.17452 -15.73310 -14.77319 -14.41720 -14.12945 -13.79746 -13.45685 -13.25475 -13.10763 -12.77655 -12.53829 -12.38931 -12.24012 -11.94834 -11.64740 -11.52208 -11.39482 -11.18498 -10.58715 -10.57348 -8.94473 -8.21948 -6.33411 1.39880 1.41397 1.52678 2.37328 2.46156 3.11393 3.46900 3.79884 4.01630 4.06693 4.21789 4.26222 4.36532 4.52215 4.65863 4.74998 4.85398 4.92470 4.95020 5.00898 5.09520 5.13180 5.17056 5.30364 5.48612 5.65526 5.72351 5.81832 6.16804 6.24403 6.46580 6.83098 7.36163 8.90124 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.085047 B = 0.005705 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 329.148803 B = 4906.523966 C = 5111.223111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.027 3.973 10 C -0.092 4.092 11 C 0.059 3.941 12 N -0.546 5.546 13 N -0.371 5.371 14 C 0.002 3.998 15 C -0.116 4.116 16 C -0.126 4.126 17 C 0.036 3.964 18 H 0.264 0.736 19 H -0.009 1.009 20 H -0.009 1.009 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.061 0.939 24 H 0.031 0.969 25 H 0.358 0.642 26 H 0.075 0.925 27 H 0.048 0.952 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.759 -16.171 -0.991 16.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.010 4.010 10 C -0.131 4.131 11 C -0.071 4.071 12 N -0.269 5.269 13 N -0.185 5.185 14 C -0.126 4.126 15 C -0.155 4.155 16 C -0.165 4.165 17 C -0.093 4.093 18 H 0.073 0.927 19 H 0.009 0.991 20 H 0.010 0.990 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.080 0.920 24 H 0.049 0.951 25 H 0.177 0.823 26 H 0.094 0.906 27 H 0.066 0.934 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.829 -16.325 -1.156 16.468 hybrid contribution -0.360 1.576 0.165 1.625 sum 1.470 -14.748 -0.991 14.855 Atomic orbital electron populations 1.70097 1.07856 1.27849 1.51636 1.26000 0.95787 1.03455 0.94600 0.85415 0.78661 0.78243 0.78543 1.19725 1.20642 1.18682 1.21685 0.93602 0.92296 1.50671 0.92107 1.18944 0.94317 0.92998 0.94776 1.21375 0.98159 0.92438 1.01104 1.22179 0.95017 0.90210 0.99687 1.63724 1.13672 0.96724 1.52745 1.68130 1.04295 1.03515 1.42556 1.23716 0.88604 0.99195 1.01129 1.22462 0.98873 0.93843 1.00336 1.22435 0.93705 1.00551 0.99795 1.22958 0.99001 0.94273 0.93060 0.92714 0.99089 0.99018 0.92594 0.92624 0.92019 0.95060 0.82307 0.90628 0.93375 0.89565 0.89902 0.90875 0.88977 0.93698 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.53 13.29 21.45 0.28 -57.25 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.97 44.68 29.54 68.60 2.03 46.70 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.54 -31.59 9.11 25.60 0.23 -31.36 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.48 4.97 29.85 0.15 1.63 16 10 C -0.09 -3.89 5.35 30.59 0.16 -3.73 16 11 C 0.06 2.13 4.59 86.30 0.40 2.53 16 12 N -0.55 -17.25 6.94 -186.70 -1.30 -18.54 16 13 N -0.37 -10.38 6.18 -502.19 -3.10 -13.48 16 14 C 0.00 0.05 5.24 86.65 0.45 0.51 16 15 C -0.12 -2.22 7.06 31.80 0.22 -2.00 16 16 C -0.13 -2.25 6.93 31.47 0.22 -2.03 16 17 C 0.04 0.83 6.97 86.45 0.60 1.43 16 18 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 19 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 20 H -0.01 -0.50 8.14 -2.39 -0.02 -0.51 16 21 H 0.06 2.27 8.14 -2.39 -0.02 2.26 16 22 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 23 H 0.06 2.33 6.47 -2.38 -0.02 2.31 16 24 H 0.03 1.16 7.07 -2.39 -0.02 1.14 16 25 H 0.36 10.66 8.89 -204.85 -1.82 8.84 16 26 H 0.08 2.06 7.64 -2.38 -0.02 2.04 16 27 H 0.05 1.43 5.89 -2.39 -0.01 1.41 16 28 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.04 1.17 8.00 -2.38 -0.02 1.15 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -64.16 266.24 0.06 -64.09 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -0.75 Total: 11.07 kcal Atomic # 6 Polarization: -35.50 SS G_CDS: 2.90 Total: -32.60 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -4.11 Total: -89.27 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -64.16 0.06 -64.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686777679.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.570 kcal (2) G-P(sol) polarization free energy of solvation -64.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds