Wall clock time and date at job start Mon Mar 30 2020 02:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86798 * 120.00537 * 2 1 4 4 H 1.48503 * 109.47116 * 240.00083 * 3 2 1 5 5 H 1.48496 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47419 * 119.99944 * 3 2 1 7 7 C 1.37883 * 119.99438 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99520 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00241 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47190 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.47037 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46847 * 179.97438 * 11 10 9 13 13 N 1.46900 * 109.46641 * 179.97438 * 12 11 10 14 14 N 1.45408 * 110.99564 * 180.02562 * 13 12 11 15 15 C 1.47955 * 111.00150 * 120.00549 * 14 13 12 16 16 C 1.53937 * 86.18157 * 137.57830 * 15 14 13 17 17 C 1.47967 * 110.99658 * 219.36478 * 14 13 12 18 18 H 0.97010 * 119.99639 * 359.97438 * 1 2 3 19 19 H 1.08999 * 109.47679 * 59.99872 * 9 7 2 20 20 H 1.09002 * 109.47354 * 299.99396 * 9 7 2 21 21 H 1.09000 * 109.47358 * 59.99987 * 10 9 7 22 22 H 1.09000 * 109.47228 * 299.99600 * 10 9 7 23 23 H 1.09000 * 109.46991 * 59.99843 * 11 10 9 24 24 H 1.09000 * 109.46850 * 299.99912 * 11 10 9 25 25 H 1.09005 * 109.46743 * 60.00237 * 12 11 10 26 26 H 1.08994 * 109.47301 * 300.00158 * 12 11 10 27 27 H 1.00900 * 111.00564 * 303.95263 * 13 12 11 28 28 H 1.09005 * 113.75866 * 23.26226 * 15 14 13 29 29 H 1.08996 * 113.75657 * 251.90281 * 15 14 13 30 30 H 1.08998 * 113.72858 * 90.64100 * 16 15 14 31 31 H 1.09004 * 113.73337 * 221.91809 * 16 15 14 32 32 H 1.08994 * 113.76237 * 108.09835 * 17 14 13 33 33 H 1.09000 * 113.76000 * 336.73232 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4991 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4799 -4.9872 0.0012 12 6 2.4741 -6.1501 0.0005 13 7 1.7394 -7.4222 0.0018 14 7 2.6545 -8.5523 0.0018 15 6 2.4521 -9.3984 1.1986 16 6 2.5923 -10.5997 0.2463 17 6 2.1575 -9.6370 -0.8734 18 1 -0.4850 0.8402 0.0004 19 1 0.6245 -2.5571 -0.8896 20 1 0.6239 -2.5567 0.8903 21 1 2.8717 -3.6045 0.8905 22 1 2.8716 -3.6045 -0.8895 23 1 0.8529 -5.0451 -0.8886 24 1 0.8535 -5.0446 0.8914 25 1 3.1013 -6.0923 0.8901 26 1 3.1001 -6.0925 -0.8898 27 1 1.1038 -7.4721 0.7838 28 1 1.4608 -9.3026 1.6417 29 1 3.2557 -9.3224 1.9310 30 1 3.6157 -10.9599 0.1423 31 1 1.8769 -11.3990 0.4400 32 1 2.7257 -9.7516 -1.7964 33 1 1.0800 -9.6109 -1.0363 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686779203.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:55 Heat of formation + Delta-G solvation = 37.248153 kcal Electronic energy + Delta-G solvation = -12126.987055 eV Core-core repulsion = 9995.826950 eV Total energy + Delta-G solvation = -2131.160106 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.53131 -35.64979 -33.39330 -31.66881 -28.49022 -26.24888 -25.79022 -23.64790 -21.29307 -20.22541 -19.82242 -16.78616 -16.18749 -15.99219 -15.28419 -14.47703 -14.24083 -13.93178 -12.88323 -12.69917 -12.55465 -12.13036 -11.80915 -11.52706 -11.15155 -11.07810 -10.95836 -10.57103 -10.48219 -10.38437 -9.59580 -9.45945 -9.21625 -8.98414 -8.42533 -8.29443 -5.94895 -3.96986 3.36636 3.40480 3.42092 3.44264 4.25040 4.28277 4.50330 4.79831 5.15349 5.31052 5.36667 5.40543 5.48283 5.53195 5.61113 5.81614 5.89533 5.92608 6.04568 6.17534 6.39416 6.55492 6.83797 6.96836 7.03239 7.24106 7.56250 7.74034 7.90168 8.06288 8.49342 9.10314 9.66636 11.16501 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.116795 B = 0.004629 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 239.678293 B = 6047.148730 C = 6131.751409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.107 4.107 11 C -0.116 4.116 12 C 0.071 3.929 13 N -0.555 5.555 14 N -0.320 5.320 15 C -0.029 4.029 16 C -0.150 4.150 17 C 0.015 3.985 18 H 0.260 0.740 19 H 0.016 0.984 20 H 0.014 0.986 21 H 0.045 0.955 22 H 0.048 0.952 23 H 0.065 0.935 24 H 0.053 0.947 25 H 0.030 0.970 26 H 0.074 0.926 27 H 0.328 0.672 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.412 -18.357 1.253 18.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.146 4.146 11 C -0.155 4.155 12 C -0.058 4.058 13 N -0.278 5.278 14 N -0.133 5.133 15 C -0.160 4.160 16 C -0.189 4.189 17 C -0.115 4.115 18 H 0.070 0.930 19 H 0.034 0.966 20 H 0.032 0.968 21 H 0.064 0.936 22 H 0.067 0.933 23 H 0.083 0.917 24 H 0.071 0.929 25 H 0.048 0.952 26 H 0.093 0.907 27 H 0.146 0.854 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.810 -17.914 0.434 18.320 hybrid contribution -0.106 0.742 1.164 1.384 sum 3.704 -17.171 1.598 17.639 Atomic orbital electron populations 1.69961 1.06058 1.26607 1.51004 1.25032 0.94847 0.99221 0.95419 0.86662 0.79581 0.83176 0.78602 1.20241 1.21312 1.20281 1.21262 0.93017 0.91219 1.50395 0.92784 1.19093 0.94032 0.91340 0.97143 1.21577 0.99065 0.93669 1.00240 1.21657 0.97941 0.93990 1.01867 1.21996 0.96286 0.86657 1.00886 1.64188 1.15209 1.00423 1.47961 1.71644 1.36566 1.01071 1.04050 1.24446 1.01702 0.94148 0.95671 1.23296 1.02709 0.96678 0.96219 1.23929 1.00594 0.89438 0.97513 0.93012 0.96591 0.96751 0.93605 0.93287 0.91663 0.92871 0.95173 0.90719 0.85384 0.90549 0.89375 0.89183 0.90736 0.89401 0.90122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -15.22 9.11 -34.44 -0.31 -15.53 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 10 C -0.11 -2.29 5.15 -26.72 -0.14 -2.43 16 11 C -0.12 -2.06 5.48 -26.73 -0.15 -2.21 16 12 C 0.07 1.11 6.14 -3.82 -0.02 1.09 16 13 N -0.56 -7.77 6.75 -10.37 -0.07 -7.84 16 14 N -0.32 -4.04 6.45 -117.32 -0.76 -4.80 16 15 C -0.03 -0.28 8.12 -2.77 -0.02 -0.31 16 16 C -0.15 -1.21 8.28 -25.80 -0.21 -1.43 16 17 C 0.01 0.15 8.29 -2.76 -0.02 0.13 16 18 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 19 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 20 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 21 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 22 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 23 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.33 4.17 7.77 -174.65 -1.36 2.81 16 28 H 0.08 0.68 7.55 -51.93 -0.39 0.28 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 LS Contribution 275.51 15.07 4.15 4.15 Total: -1.00 -31.13 275.51 -8.86 -39.99 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -6.78 Total: -3.00 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -1.12 Total: -18.73 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: -0.09 Total: -39.49 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.13 -8.86 -39.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686779203.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.235 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds