Wall clock time and date at job start Mon Mar 30 2020 02:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86798 * 120.00537 * 2 1 4 4 H 1.48503 * 109.47116 * 240.00083 * 3 2 1 5 5 H 1.48496 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47419 * 119.99944 * 3 2 1 7 7 C 1.37883 * 119.99438 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99520 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00241 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47190 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.47037 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46847 * 179.97438 * 11 10 9 13 13 N 1.46900 * 109.46641 * 179.97438 * 12 11 10 14 14 N 1.45408 * 110.99564 * 180.02562 * 13 12 11 15 15 C 1.47955 * 111.00150 * 120.00549 * 14 13 12 16 16 C 1.53937 * 86.18157 * 137.57830 * 15 14 13 17 17 C 1.47967 * 110.99658 * 219.36478 * 14 13 12 18 18 H 0.97010 * 119.99639 * 359.97438 * 1 2 3 19 19 H 1.08999 * 109.47679 * 59.99872 * 9 7 2 20 20 H 1.09002 * 109.47354 * 299.99396 * 9 7 2 21 21 H 1.09000 * 109.47358 * 59.99987 * 10 9 7 22 22 H 1.09000 * 109.47228 * 299.99600 * 10 9 7 23 23 H 1.09000 * 109.46991 * 59.99843 * 11 10 9 24 24 H 1.09000 * 109.46850 * 299.99912 * 11 10 9 25 25 H 1.09005 * 109.46743 * 60.00237 * 12 11 10 26 26 H 1.08994 * 109.47301 * 300.00158 * 12 11 10 27 27 H 1.00900 * 111.00564 * 303.95263 * 13 12 11 28 28 H 1.09005 * 113.75866 * 23.26226 * 15 14 13 29 29 H 1.08996 * 113.75657 * 251.90281 * 15 14 13 30 30 H 1.08998 * 113.72858 * 90.64100 * 16 15 14 31 31 H 1.09004 * 113.73337 * 221.91809 * 16 15 14 32 32 H 1.08994 * 113.76237 * 108.09835 * 17 14 13 33 33 H 1.09000 * 113.76000 * 336.73232 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4991 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4799 -4.9872 0.0012 12 6 2.4741 -6.1501 0.0005 13 7 1.7394 -7.4222 0.0018 14 7 2.6545 -8.5523 0.0018 15 6 2.4521 -9.3984 1.1986 16 6 2.5923 -10.5997 0.2463 17 6 2.1575 -9.6370 -0.8734 18 1 -0.4850 0.8402 0.0004 19 1 0.6245 -2.5571 -0.8896 20 1 0.6239 -2.5567 0.8903 21 1 2.8717 -3.6045 0.8905 22 1 2.8716 -3.6045 -0.8895 23 1 0.8529 -5.0451 -0.8886 24 1 0.8535 -5.0446 0.8914 25 1 3.1013 -6.0923 0.8901 26 1 3.1001 -6.0925 -0.8898 27 1 1.1038 -7.4721 0.7838 28 1 1.4608 -9.3026 1.6417 29 1 3.2557 -9.3224 1.9310 30 1 3.6157 -10.9599 0.1423 31 1 1.8769 -11.3990 0.4400 32 1 2.7257 -9.7516 -1.7964 33 1 1.0800 -9.6109 -1.0363 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686779203.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:55 Heat of formation + Delta-G solvation = 16.626153 kcal Electronic energy + Delta-G solvation = -12127.881292 eV Core-core repulsion = 9995.826950 eV Total energy + Delta-G solvation = -2132.054343 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.37064 -37.17835 -35.23301 -33.39965 -30.10789 -27.27284 -26.98376 -25.24440 -22.83528 -21.83468 -20.76139 -18.45298 -17.65955 -16.98524 -16.51294 -16.47781 -15.56142 -14.98604 -14.52820 -14.18337 -13.70791 -13.55422 -13.39611 -12.91129 -12.69643 -12.44443 -12.31724 -12.12426 -12.00563 -11.85181 -11.41468 -11.31701 -10.99793 -10.54956 -10.35286 -9.46262 -8.19826 -6.31422 1.39740 1.43374 1.51343 2.40288 2.48595 3.12825 3.41851 3.57715 4.06704 4.09209 4.21244 4.42283 4.48409 4.57819 4.63939 4.68617 4.81943 4.88030 4.92858 5.04290 5.15090 5.20701 5.22995 5.30135 5.35337 5.53921 5.76396 5.86102 5.89691 6.25739 6.58576 6.85606 7.37794 8.91950 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.116795 B = 0.004629 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 239.678293 B = 6047.148730 C = 6131.751409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.096 4.096 11 C -0.103 4.103 12 C 0.085 3.915 13 N -0.562 5.562 14 N -0.345 5.345 15 C -0.032 4.032 16 C -0.133 4.133 17 C 0.009 3.991 18 H 0.264 0.736 19 H -0.010 1.010 20 H -0.009 1.009 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.030 0.970 26 H 0.066 0.934 27 H 0.334 0.666 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.446 -19.060 1.558 19.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.134 4.134 11 C -0.142 4.142 12 C -0.044 4.044 13 N -0.285 5.285 14 N -0.158 5.158 15 C -0.162 4.162 16 C -0.172 4.172 17 C -0.120 4.120 18 H 0.073 0.927 19 H 0.009 0.991 20 H 0.010 0.990 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.085 0.915 27 H 0.153 0.847 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.848 -18.638 0.742 19.273 hybrid contribution -0.459 0.904 1.066 1.471 sum 4.389 -17.735 1.808 18.359 Atomic orbital electron populations 1.70098 1.07853 1.27861 1.51628 1.26020 0.95811 1.03470 0.94655 0.85477 0.78270 0.77933 0.79226 1.19154 1.20691 1.19096 1.21720 0.93584 0.92555 1.50694 0.92226 1.19020 0.94482 0.93183 0.94732 1.21383 0.98005 0.93502 1.00498 1.21451 0.97928 0.93177 1.01653 1.21688 0.95367 0.86890 1.00484 1.64105 1.15538 1.00305 1.48504 1.71633 1.36725 1.01320 1.06164 1.24548 1.02330 0.94091 0.95183 1.23234 1.03624 0.96311 0.94041 1.24018 1.00644 0.89295 0.98046 0.92735 0.99144 0.99042 0.93114 0.93119 0.92419 0.92554 0.95153 0.91499 0.84694 0.89662 0.89113 0.88497 0.88652 0.89360 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.24 13.29 21.45 0.28 -57.95 16 2 C 0.00 -0.12 5.46 84.66 0.46 0.35 16 3 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.55 -32.29 9.11 25.60 0.23 -32.05 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.02 1.26 4.97 29.85 0.15 1.41 16 10 C -0.10 -4.10 5.15 30.60 0.16 -3.95 16 11 C -0.10 -3.66 5.48 30.60 0.17 -3.49 16 12 C 0.09 2.61 6.14 86.30 0.53 3.14 16 13 N -0.56 -15.11 6.75 -186.72 -1.26 -16.37 16 14 N -0.34 -8.18 6.45 -525.10 -3.39 -11.57 16 15 C -0.03 -0.55 8.12 86.41 0.70 0.16 16 16 C -0.13 -1.81 8.28 31.24 0.26 -1.55 16 17 C 0.01 0.17 8.29 86.40 0.72 0.89 16 18 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 19 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 20 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 21 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 22 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 23 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 26 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.33 8.09 7.77 -204.84 -1.59 6.49 16 28 H 0.09 1.32 7.55 -2.38 -0.02 1.30 16 29 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.08 1.51 8.10 -2.39 -0.02 1.49 16 Total: -1.00 -66.24 275.51 0.50 -65.74 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -0.54 Total: 8.09 kcal Atomic # 6 Polarization: -38.48 SS G_CDS: 3.37 Total: -35.10 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -4.36 Total: -85.89 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -66.24 0.50 -65.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686779203.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.362 kcal (2) G-P(sol) polarization free energy of solvation -66.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds