Wall clock time and date at job start Mon Mar 30 2020 02:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.47304 * 2 1 4 4 C 1.52992 * 109.47321 * 239.99859 * 2 1 3 5 5 C 1.50700 * 109.47257 * 174.99983 * 4 2 1 6 6 H 1.07999 * 119.99988 * 359.97438 * 5 4 2 7 7 C 1.37885 * 120.00047 * 180.02562 * 5 4 2 8 8 N 1.31518 * 119.99792 * 359.72305 * 7 5 4 9 9 Si 1.86795 * 120.00009 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47163 * 59.99902 * 9 7 5 11 11 H 1.48495 * 109.47159 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47290 * 299.99897 * 9 7 5 13 13 O 1.42899 * 109.46848 * 119.99889 * 2 1 3 14 14 C 1.42900 * 113.99841 * 269.99781 * 13 2 1 15 15 C 1.54266 * 110.03529 * 267.16549 * 14 13 2 16 16 C 1.54888 * 104.19712 * 217.10674 * 15 14 13 17 17 C 1.54888 * 102.74747 * 37.94500 * 16 15 14 18 18 C 1.53881 * 110.02964 * 150.00093 * 14 13 2 19 19 H 1.09007 * 109.46968 * 59.99854 * 1 2 3 20 20 H 1.08992 * 109.47130 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47150 * 300.00526 * 1 2 3 22 22 H 1.09004 * 109.47330 * 55.00006 * 4 2 1 23 23 H 1.08997 * 109.47279 * 295.00493 * 4 2 1 24 24 H 0.97000 * 119.99468 * 179.97438 * 8 7 5 25 25 H 1.08997 * 110.01787 * 28.61578 * 14 13 2 26 26 H 1.08998 * 110.48634 * 335.79048 * 15 14 13 27 27 H 1.09001 * 110.48498 * 98.42873 * 15 14 13 28 28 H 1.09001 * 110.75637 * 279.62722 * 16 15 14 29 29 H 1.09001 * 110.75546 * 156.25943 * 16 15 14 30 30 H 1.09001 * 110.48567 * 203.37368 * 17 16 15 31 31 H 1.09001 * 110.59808 * 80.79208 * 17 16 15 32 32 H 1.08993 * 110.03262 * 238.56969 * 18 14 13 33 33 H 1.09000 * 110.03345 * 0.02562 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 3.5420 -0.6149 -1.3126 6 1 4.0790 -0.0854 -0.5395 7 6 4.2305 -1.1927 -2.3583 8 7 3.5769 -1.8412 -3.2973 9 14 6.0922 -1.0614 -2.4365 10 1 6.6839 -1.6884 -1.2274 11 1 6.5872 -1.7614 -3.6490 12 1 6.4856 0.3694 -2.4951 13 8 2.0063 -0.6736 1.1668 14 6 2.2001 0.1830 2.2941 15 6 3.6583 0.6849 2.3320 16 6 4.0107 0.7147 3.8400 17 6 3.2984 -0.5492 4.3824 18 6 1.9712 -0.6017 3.5978 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 1.6055 -0.2618 -2.1369 23 1 1.7517 -1.7715 -1.2055 24 1 4.0612 -2.2473 -4.0331 25 1 1.5145 1.0288 2.2422 26 1 4.3133 -0.0056 1.8007 27 1 3.7288 1.6848 1.9039 28 1 3.6143 1.6139 4.3116 29 1 5.0884 0.6435 3.9863 30 1 3.1063 -0.4499 5.4508 31 1 3.8943 -1.4401 4.1841 32 1 1.1753 -0.1362 4.1790 33 1 1.7128 -1.6360 3.3707 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695798882.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:35 Heat of formation + Delta-G solvation = -77.804633 kcal Electronic energy + Delta-G solvation = -13096.925766 eV Core-core repulsion = 10928.483846 eV Total energy + Delta-G solvation = -2168.441920 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.52796 -35.89905 -32.94937 -31.00710 -28.41998 -27.31320 -27.05246 -23.09071 -20.53680 -20.01868 -19.78907 -16.35652 -16.23328 -15.33674 -14.66984 -14.38736 -13.42030 -13.08069 -12.97458 -12.64236 -11.96903 -11.71498 -11.46550 -11.18069 -10.95727 -10.89938 -10.78766 -10.60197 -10.53353 -10.39765 -10.36716 -9.83902 -9.25418 -9.10141 -8.49208 -8.28314 -5.91627 -3.91270 3.38365 3.42319 3.45234 4.50034 4.53112 4.90307 4.91937 5.20341 5.45190 5.59372 5.74831 5.80362 5.84442 5.87985 5.99780 6.04049 6.08913 6.11815 6.24354 6.30216 6.33547 6.49731 6.56332 6.74410 6.81269 7.01360 7.62337 7.74506 8.06702 8.31437 8.52406 9.12728 9.70399 11.20250 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.031614 B = 0.011105 C = 0.008767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.484343 B = 2520.869195 C = 3193.033460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.090 3.910 3 H 0.045 0.955 4 C 0.024 3.976 5 C -0.504 4.504 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 O -0.360 6.360 14 C 0.085 3.915 15 C -0.147 4.147 16 C -0.124 4.124 17 C -0.122 4.122 18 C -0.123 4.123 19 H 0.058 0.942 20 H 0.057 0.943 21 H 0.039 0.961 22 H 0.028 0.972 23 H 0.024 0.976 24 H 0.259 0.741 25 H 0.050 0.950 26 H 0.085 0.915 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.350 4.668 12.022 13.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.033 3.967 3 H 0.063 0.937 4 C -0.013 4.013 5 C -0.542 4.542 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.204 1.204 13 O -0.279 6.279 14 C 0.026 3.974 15 C -0.185 4.185 16 C -0.161 4.161 17 C -0.159 4.159 18 C -0.161 4.161 19 H 0.077 0.923 20 H 0.076 0.924 21 H 0.058 0.942 22 H 0.046 0.954 23 H 0.043 0.957 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.296 4.362 11.855 12.839 hybrid contribution 0.954 0.333 -0.178 1.026 sum -1.341 4.695 11.676 12.656 Atomic orbital electron populations 1.22350 0.98384 1.01818 1.00375 1.22395 0.90778 0.96061 0.87469 0.93700 1.19228 0.96273 0.96291 0.89499 1.21128 0.91923 1.33771 1.07407 0.92586 1.24996 0.98168 0.95568 0.95896 1.69953 1.35454 1.36253 1.12328 0.86689 0.86130 0.78067 0.77300 1.20267 1.21411 1.20390 1.88069 1.86226 1.34253 1.19360 1.22626 0.95040 0.92422 0.87300 1.22928 0.98042 1.01645 0.95859 1.22432 0.99953 0.97605 0.96129 1.22312 0.96534 0.98504 0.98563 1.22216 0.97229 1.01795 0.94819 0.92310 0.92416 0.94216 0.95390 0.95717 0.93094 0.93141 0.89636 0.92042 0.92025 0.91797 0.92180 0.91423 0.91910 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 9.53 37.16 0.35 -2.77 16 2 C 0.09 1.97 2.49 -26.73 -0.07 1.90 16 3 H 0.04 0.96 7.80 -51.93 -0.40 0.56 16 4 C 0.02 0.64 4.68 -27.89 -0.13 0.51 16 5 C -0.50 -14.55 8.88 -34.44 -0.31 -14.86 16 6 H 0.06 1.58 7.57 -52.49 -0.40 1.18 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.58 13.29 55.43 0.74 -26.85 16 9 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 O -0.36 -7.79 9.29 -35.23 -0.33 -8.12 16 14 C 0.08 1.46 3.18 -25.61 -0.08 1.38 16 15 C -0.15 -2.45 6.56 -25.07 -0.16 -2.62 16 16 C -0.12 -1.63 6.91 -24.74 -0.17 -1.80 16 17 C -0.12 -1.57 6.83 -25.07 -0.17 -1.75 16 18 C -0.12 -1.78 6.61 -25.61 -0.17 -1.95 16 19 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 20 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 21 H 0.04 0.63 8.03 -51.93 -0.42 0.21 16 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.05 0.81 7.69 -51.93 -0.40 0.41 16 26 H 0.09 1.67 7.90 -51.93 -0.41 1.26 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.19 7.95 -51.93 -0.41 0.77 16 LS Contribution 271.24 15.07 4.09 4.09 Total: -1.00 -30.61 271.24 -7.33 -37.94 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -5.80 Total: -3.79 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: -1.00 Total: -20.47 kcal Atomic # 7 Polarization: -27.58 SS G_CDS: 0.74 Total: -26.85 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -0.33 Total: -8.12 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.61 -7.33 -37.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695798882.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.864 kcal (2) G-P(sol) polarization free energy of solvation -30.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds