Wall clock time and date at job start Mon Mar 30 2020 02:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.46515 * 2 1 4 4 C 1.52997 * 109.47052 * 119.99705 * 2 1 3 5 5 C 1.50696 * 109.47152 * 185.00289 * 4 2 1 6 6 H 1.07998 * 120.00062 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99951 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00237 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99953 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47122 * 59.99774 * 9 7 5 11 11 H 1.48503 * 109.47018 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46856 * 299.99847 * 9 7 5 13 13 O 1.42900 * 109.47232 * 239.99877 * 2 1 3 14 14 C 1.42899 * 113.99647 * 90.00225 * 13 2 1 15 15 C 1.54894 * 110.75348 * 150.00266 * 14 13 2 16 16 C 1.54266 * 104.31305 * 156.31802 * 15 14 13 17 17 C 1.53869 * 106.60031 * 336.32486 * 16 15 14 18 18 C 1.54266 * 106.59800 * 359.97438 * 17 16 15 19 19 H 1.08998 * 109.47144 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.47012 * 300.00296 * 1 2 3 21 21 H 1.09004 * 109.46704 * 60.00339 * 1 2 3 22 22 H 1.09002 * 109.46995 * 305.00154 * 4 2 1 23 23 H 1.09000 * 109.47137 * 64.99704 * 4 2 1 24 24 H 0.96997 * 120.00357 * 179.97438 * 8 7 5 25 25 H 1.08993 * 110.82239 * 26.65876 * 14 13 2 26 26 H 1.09002 * 110.48891 * 37.57228 * 15 14 13 27 27 H 1.08998 * 110.48494 * 275.06315 * 15 14 13 28 28 H 1.09001 * 110.03084 * 95.60669 * 16 15 14 29 29 H 1.08995 * 110.03255 * 217.03136 * 16 15 14 30 30 H 1.08999 * 110.04012 * 119.28327 * 17 16 15 31 31 H 1.09006 * 110.02998 * 240.67078 * 17 16 15 32 32 H 1.09005 * 110.48526 * 142.29451 * 18 17 16 33 33 H 1.09007 * 110.48724 * 264.79935 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0861 0.5393 7 6 4.2304 -1.1934 2.3579 8 7 3.5765 -1.8376 3.2996 9 14 6.0922 -1.0621 2.4363 10 1 6.4855 0.3687 2.4959 11 1 6.5872 -1.7631 3.6483 12 1 6.6839 -1.6881 1.2266 13 8 2.0064 -0.6737 -1.1667 14 6 2.2002 0.1830 -2.2940 15 6 3.3394 -0.3494 -3.1985 16 6 3.0380 0.2537 -4.5860 17 6 1.5315 0.5653 -4.6122 18 6 0.9697 0.1401 -3.2398 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8901 22 1 1.6054 -0.2616 2.1369 23 1 1.7516 -1.7714 1.2057 24 1 4.0608 -2.2450 4.0346 25 1 2.4064 1.2041 -1.9737 26 1 3.3146 -1.4382 -3.2422 27 1 4.3075 -0.0051 -2.8350 28 1 3.6113 1.1700 -4.7274 29 1 3.2843 -0.4654 -5.3672 30 1 1.3734 1.6327 -4.7662 31 1 1.0465 -0.0021 -5.4066 32 1 0.2074 0.8438 -2.9050 33 1 0.5600 -0.8687 -3.2912 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695798883.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:37 Heat of formation + Delta-G solvation = -77.121533 kcal Electronic energy + Delta-G solvation = -12994.474077 eV Core-core repulsion = 10826.061779 eV Total energy + Delta-G solvation = -2168.412298 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.50276 -35.99604 -32.97052 -31.05178 -28.51092 -27.32565 -27.06331 -23.07579 -20.33571 -20.23835 -19.91788 -16.35572 -16.28691 -15.45754 -14.61520 -14.23054 -13.79808 -13.22178 -12.86692 -12.42780 -11.96098 -11.82261 -11.50679 -11.35880 -11.17174 -11.02516 -10.88945 -10.63203 -10.49521 -10.28672 -10.17081 -9.93116 -9.31185 -9.09872 -8.51193 -8.29299 -5.92245 -3.92284 3.38381 3.42199 3.45327 4.43276 4.52840 4.84619 4.87183 5.12148 5.44467 5.58463 5.61784 5.75064 5.78487 5.84304 5.87942 6.01410 6.06858 6.08752 6.20603 6.24683 6.36192 6.46421 6.51393 6.55096 6.80812 7.00275 7.61504 7.73141 8.05641 8.30066 8.51377 9.11643 9.69615 11.19556 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.038961 B = 0.009517 C = 0.007890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.498342 B = 2941.382329 C = 3548.112856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.091 3.909 3 H 0.045 0.955 4 C 0.023 3.977 5 C -0.506 4.506 6 H 0.054 0.946 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 O -0.356 6.356 14 C 0.084 3.916 15 C -0.123 4.123 16 C -0.123 4.123 17 C -0.122 4.122 18 C -0.146 4.146 19 H 0.056 0.944 20 H 0.057 0.943 21 H 0.041 0.959 22 H 0.029 0.971 23 H 0.025 0.975 24 H 0.260 0.740 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.616 4.890 -12.452 13.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.034 3.966 3 H 0.063 0.937 4 C -0.014 4.014 5 C -0.544 4.544 6 H 0.072 0.928 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.719 3.281 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 O -0.274 6.274 14 C 0.025 3.975 15 C -0.160 4.160 16 C -0.160 4.160 17 C -0.160 4.160 18 C -0.184 4.184 19 H 0.075 0.925 20 H 0.076 0.924 21 H 0.060 0.940 22 H 0.047 0.953 23 H 0.043 0.957 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.553 4.590 -12.289 13.591 hybrid contribution 0.924 0.295 0.118 0.978 sum -2.629 4.885 -12.171 13.375 Atomic orbital electron populations 1.22397 0.98277 1.01822 1.00478 1.22461 0.90995 0.95874 0.87318 0.93656 1.19245 0.96225 0.96353 0.89554 1.21108 0.91956 1.33889 1.07447 0.92765 1.24994 0.98245 0.95520 0.95831 1.69945 1.35480 1.36315 1.12222 0.86673 0.86029 0.78075 0.77306 1.20385 1.21372 1.20255 1.88019 1.85938 1.34198 1.19292 1.23107 0.93417 0.93835 0.87158 1.22390 0.98402 1.01638 0.93591 1.22069 0.96051 1.00507 0.97399 1.22043 0.95845 1.00684 0.97425 1.22973 0.98521 1.01866 0.95038 0.92463 0.92396 0.93957 0.95309 0.95676 0.93053 0.92075 0.90679 0.91308 0.92042 0.91898 0.92186 0.92090 0.92061 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 9.48 37.16 0.35 -2.77 16 2 C 0.09 1.98 2.66 -26.73 -0.07 1.91 16 3 H 0.05 0.97 7.39 -51.93 -0.38 0.58 16 4 C 0.02 0.62 4.68 -27.89 -0.13 0.49 16 5 C -0.51 -14.72 8.88 -34.44 -0.31 -15.03 16 6 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 7 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.62 13.29 55.43 0.74 -26.89 16 9 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 O -0.36 -7.72 9.54 -35.23 -0.34 -8.06 16 14 C 0.08 1.44 3.38 -24.53 -0.08 1.36 16 15 C -0.12 -1.91 6.54 -25.07 -0.16 -2.07 16 16 C -0.12 -1.49 6.80 -25.62 -0.17 -1.66 16 17 C -0.12 -1.43 6.80 -25.62 -0.17 -1.61 16 18 C -0.15 -2.08 6.09 -24.87 -0.15 -2.23 16 19 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 20 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 21 H 0.04 0.66 6.76 -51.93 -0.35 0.31 16 22 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.06 1.04 7.40 -51.93 -0.38 0.65 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.82 7.25 -51.93 -0.38 0.44 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 268.87 15.07 4.05 4.05 Total: -1.00 -30.73 268.87 -7.25 -37.99 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -5.69 Total: -4.23 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -1.00 Total: -20.11 kcal Atomic # 7 Polarization: -27.62 SS G_CDS: 0.74 Total: -26.89 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -0.34 Total: -8.06 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.73 -7.25 -37.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695798883.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.132 kcal (2) G-P(sol) polarization free energy of solvation -30.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds