Wall clock time and date at job start Mon Mar 30 2020 02:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47448 * 2 1 4 4 C 1.53002 * 109.46893 * 240.00120 * 2 1 3 5 5 C 1.50706 * 109.47153 * 174.99718 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 O 1.42894 * 109.46984 * 120.00733 * 2 1 3 14 14 C 1.42902 * 113.99771 * 269.99460 * 13 2 1 15 15 C 1.53003 * 109.47266 * 179.97438 * 14 13 2 16 16 C 1.52998 * 109.47276 * 180.02562 * 15 14 13 17 17 C 1.52999 * 117.50030 * 243.62338 * 16 15 14 18 18 C 1.52997 * 60.00323 * 252.51034 * 17 16 15 19 19 H 1.08996 * 109.46870 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.46894 * 299.99661 * 1 2 3 21 21 H 1.09002 * 109.46592 * 59.99548 * 1 2 3 22 22 H 1.09004 * 109.47178 * 55.00508 * 4 2 1 23 23 H 1.08993 * 109.47411 * 295.00191 * 4 2 1 24 24 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 25 25 H 1.08994 * 109.47440 * 300.00275 * 14 13 2 26 26 H 1.09004 * 109.47009 * 60.00426 * 14 13 2 27 27 H 1.08994 * 109.47175 * 300.00510 * 15 14 13 28 28 H 1.09004 * 109.46699 * 60.00309 * 15 14 13 29 29 H 1.09000 * 115.54836 * 29.33225 * 16 15 14 30 30 H 1.08998 * 117.49708 * 0.02562 * 17 16 15 31 31 H 1.08999 * 117.49745 * 145.01623 * 17 16 15 32 32 H 1.08996 * 117.50066 * 252.51486 * 18 17 16 33 33 H 1.08997 * 117.50066 * 107.48432 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5420 -0.6149 -1.3129 6 1 4.0790 -0.0861 -0.5393 7 6 4.2304 -1.1925 -2.3584 8 7 3.5768 -1.8410 -3.2976 9 14 6.0921 -1.0613 -2.4368 10 1 6.5876 -1.7663 -3.6462 11 1 6.4852 0.3694 -2.5020 12 1 6.6836 -1.6824 -1.2246 13 8 2.0063 -0.6738 1.1667 14 6 2.2002 0.1827 2.2940 15 6 2.7079 -0.6411 3.4791 16 6 2.9148 0.2758 4.6863 17 6 4.3403 0.4297 5.2205 18 6 3.3102 -0.3791 6.0114 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3632 0.5139 -0.8900 22 1 1.6054 -0.2616 -2.1370 23 1 1.7516 -1.7714 -1.2057 24 1 2.6101 -1.9094 -3.2568 25 1 2.9320 0.9511 2.0450 26 1 1.2538 0.6545 2.5589 27 1 1.9757 -1.4092 3.7280 28 1 3.6541 -1.1132 3.2145 29 1 2.2634 1.1486 4.7309 30 1 5.1307 -0.1220 4.7116 31 1 4.6269 1.4039 5.6164 32 1 2.9190 0.0630 6.9277 33 1 3.4228 -1.4632 6.0230 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695816105.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:42 Heat of formation + Delta-G solvation = -51.826562 kcal Electronic energy + Delta-G solvation = -12565.746303 eV Core-core repulsion = 10398.430876 eV Total energy + Delta-G solvation = -2167.315426 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.10283 -37.07783 -33.57769 -31.62851 -29.63901 -26.97258 -23.37811 -22.67555 -22.35825 -20.66848 -19.99808 -16.74313 -16.11993 -15.64502 -15.07376 -14.09441 -13.74159 -13.57252 -13.27310 -12.52875 -12.33550 -11.81367 -11.56002 -11.41563 -11.23217 -11.16566 -10.95247 -10.65731 -10.52537 -10.14549 -10.03789 -9.84053 -9.52597 -8.85697 -8.37126 -8.25599 -6.27393 -3.93979 3.48270 3.51542 3.69716 3.75305 4.24831 4.61832 4.86766 4.91851 5.00628 5.31335 5.49908 5.50822 5.57656 5.68856 5.76699 5.81708 5.90003 5.93167 6.00719 6.07923 6.09847 6.28205 6.33621 6.46929 6.67048 6.82849 7.31570 7.43957 8.13118 8.31652 8.55586 8.97294 9.75757 11.13457 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.029553 B = 0.008554 C = 0.006886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.234329 B = 3272.579102 C = 4065.260191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.099 3.901 3 H 0.047 0.953 4 C 0.010 3.990 5 C -0.587 4.587 6 H 0.048 0.952 7 C 0.012 3.988 8 N -0.917 5.917 9 Si 1.068 2.932 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.288 1.288 13 O -0.369 6.369 14 C 0.066 3.934 15 C -0.088 4.088 16 C -0.149 4.149 17 C -0.181 4.181 18 C -0.181 4.181 19 H 0.057 0.943 20 H 0.042 0.958 21 H 0.058 0.942 22 H 0.020 0.980 23 H 0.016 0.984 24 H 0.267 0.733 25 H 0.043 0.957 26 H 0.035 0.965 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.191 4.771 14.180 15.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.041 3.959 3 H 0.065 0.935 4 C -0.027 4.027 5 C -0.625 4.625 6 H 0.066 0.934 7 C -0.191 4.191 8 N -0.554 5.554 9 Si 0.897 3.103 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.215 1.215 13 O -0.288 6.288 14 C -0.011 4.011 15 C -0.125 4.125 16 C -0.167 4.167 17 C -0.218 4.218 18 C -0.218 4.218 19 H 0.076 0.924 20 H 0.061 0.939 21 H 0.077 0.923 22 H 0.038 0.962 23 H 0.034 0.966 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.826 4.141 13.280 13.936 hybrid contribution -1.464 0.797 0.994 1.941 sum -2.290 4.938 14.274 15.277 Atomic orbital electron populations 1.22348 0.98205 1.01859 1.00605 1.22179 0.90788 0.95991 0.86924 0.93492 1.19363 0.97373 0.95713 0.90275 1.21949 0.91645 1.38212 1.10717 0.93379 1.25814 1.06839 0.93650 0.92811 1.70784 1.10241 1.40023 1.34373 0.83556 0.74561 0.76143 0.76049 1.20824 1.21581 1.21487 1.87972 1.86697 1.34596 1.19581 1.22326 0.98127 0.93317 0.87333 1.21062 1.02419 0.97339 0.91686 1.22210 0.98473 1.01508 0.94513 1.23058 0.92846 1.01674 1.04233 1.22950 1.04225 0.99660 0.94995 0.92415 0.93906 0.92257 0.96243 0.96566 0.92253 0.93846 0.94704 0.91137 0.90808 0.87943 0.88530 0.89039 0.89042 0.88760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 9.53 37.16 0.35 -2.79 16 2 C 0.10 2.19 2.67 -26.73 -0.07 2.12 16 3 H 0.05 1.03 7.79 -51.93 -0.40 0.62 16 4 C 0.01 0.26 4.00 -27.88 -0.11 0.15 16 5 C -0.59 -17.41 8.88 -34.44 -0.31 -17.71 16 6 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 7 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 8 N -0.92 -28.93 13.65 55.43 0.76 -28.17 16 9 Si 1.07 26.22 29.90 -169.99 -5.08 21.14 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 O -0.37 -8.20 9.74 -35.23 -0.34 -8.54 16 14 C 0.07 1.15 5.71 37.16 0.21 1.36 16 15 C -0.09 -1.31 5.86 -26.73 -0.16 -1.47 16 16 C -0.15 -1.81 5.74 -90.62 -0.52 -2.33 16 17 C -0.18 -2.02 10.18 -26.73 -0.27 -2.29 16 18 C -0.18 -1.89 10.25 -26.73 -0.27 -2.17 16 19 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 20 H 0.04 0.68 7.87 -51.93 -0.41 0.27 16 21 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 22 H 0.02 0.53 8.01 -51.93 -0.42 0.11 16 23 H 0.02 0.46 8.00 -51.93 -0.42 0.04 16 24 H 0.27 8.38 7.22 -40.82 -0.29 8.08 16 25 H 0.04 0.77 8.08 -51.93 -0.42 0.35 16 26 H 0.03 0.54 7.87 -51.93 -0.41 0.13 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.07 1.19 7.88 -51.93 -0.41 0.78 16 29 H 0.10 1.16 8.07 -51.93 -0.42 0.74 16 30 H 0.10 1.12 8.03 -51.93 -0.42 0.70 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 278.30 15.07 4.19 4.19 Total: -1.00 -31.93 278.30 -7.47 -39.40 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -5.75 Total: -3.15 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: -1.24 Total: -24.87 kcal Atomic # 7 Polarization: -28.93 SS G_CDS: 0.76 Total: -28.17 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.34 Total: -8.54 kcal Atomic # 14 Polarization: 26.22 SS G_CDS: -5.08 Total: 21.14 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.93 -7.47 -39.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695816105.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.426 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds