Wall clock time and date at job start Mon Mar 30 2020 02:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47448 * 2 1 4 4 C 1.53002 * 109.46893 * 240.00120 * 2 1 3 5 5 C 1.50706 * 109.47153 * 174.99718 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 O 1.42894 * 109.46984 * 120.00733 * 2 1 3 14 14 C 1.42902 * 113.99771 * 269.99460 * 13 2 1 15 15 C 1.53003 * 109.47266 * 179.97438 * 14 13 2 16 16 C 1.52998 * 109.47276 * 180.02562 * 15 14 13 17 17 C 1.52999 * 117.50030 * 243.62338 * 16 15 14 18 18 C 1.52997 * 60.00323 * 252.51034 * 17 16 15 19 19 H 1.08996 * 109.46870 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.46894 * 299.99661 * 1 2 3 21 21 H 1.09002 * 109.46592 * 59.99548 * 1 2 3 22 22 H 1.09004 * 109.47178 * 55.00508 * 4 2 1 23 23 H 1.08993 * 109.47411 * 295.00191 * 4 2 1 24 24 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 25 25 H 1.08994 * 109.47440 * 300.00275 * 14 13 2 26 26 H 1.09004 * 109.47009 * 60.00426 * 14 13 2 27 27 H 1.08994 * 109.47175 * 300.00510 * 15 14 13 28 28 H 1.09004 * 109.46699 * 60.00309 * 15 14 13 29 29 H 1.09000 * 115.54836 * 29.33225 * 16 15 14 30 30 H 1.08998 * 117.49708 * 0.02562 * 17 16 15 31 31 H 1.08999 * 117.49745 * 145.01623 * 17 16 15 32 32 H 1.08996 * 117.50066 * 252.51486 * 18 17 16 33 33 H 1.08997 * 117.50066 * 107.48432 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5420 -0.6149 -1.3129 6 1 4.0790 -0.0861 -0.5393 7 6 4.2304 -1.1925 -2.3584 8 7 3.5768 -1.8410 -3.2976 9 14 6.0921 -1.0613 -2.4368 10 1 6.5876 -1.7663 -3.6462 11 1 6.4852 0.3694 -2.5020 12 1 6.6836 -1.6824 -1.2246 13 8 2.0063 -0.6738 1.1667 14 6 2.2002 0.1827 2.2940 15 6 2.7079 -0.6411 3.4791 16 6 2.9148 0.2758 4.6863 17 6 4.3403 0.4297 5.2205 18 6 3.3102 -0.3791 6.0114 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3632 0.5139 -0.8900 22 1 1.6054 -0.2616 -2.1370 23 1 1.7516 -1.7714 -1.2057 24 1 2.6101 -1.9094 -3.2568 25 1 2.9320 0.9511 2.0450 26 1 1.2538 0.6545 2.5589 27 1 1.9757 -1.4092 3.7280 28 1 3.6541 -1.1132 3.2145 29 1 2.2634 1.1486 4.7309 30 1 5.1307 -0.1220 4.7116 31 1 4.6269 1.4039 5.6164 32 1 2.9190 0.0630 6.9277 33 1 3.4228 -1.4632 6.0230 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695816105.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:41 Heat of formation + Delta-G solvation = -70.556753 kcal Electronic energy + Delta-G solvation = -12566.558505 eV Core-core repulsion = 10398.430876 eV Total energy + Delta-G solvation = -2168.127628 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.53730 -38.26457 -35.67666 -33.38179 -31.04246 -28.96020 -25.24850 -24.23890 -23.21132 -22.25832 -21.23893 -18.97950 -17.70626 -16.76217 -16.47320 -15.68398 -15.24742 -15.21999 -15.02195 -14.05295 -13.93316 -13.51035 -13.13837 -13.04132 -12.54531 -12.50793 -12.33070 -12.26559 -12.15635 -11.93410 -11.39391 -11.14970 -10.89081 -10.74800 -10.55535 -10.25656 -8.68071 -6.35966 1.49902 1.59262 1.78764 2.56369 2.72970 2.95183 3.18146 3.85476 3.97108 4.00632 4.10287 4.17766 4.29082 4.35272 4.41954 4.47484 4.71829 4.73652 4.78628 4.94602 5.00031 5.03994 5.06168 5.10682 5.22602 5.26564 5.32821 5.36819 5.99367 6.17810 6.48697 6.62022 7.43116 8.73174 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.029553 B = 0.008554 C = 0.006886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.234329 B = 3272.579102 C = 4065.260191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.102 3.898 3 H 0.049 0.951 4 C 0.008 3.992 5 C -0.603 4.603 6 H 0.044 0.956 7 C -0.042 4.042 8 N -0.940 5.940 9 Si 1.116 2.884 10 H -0.280 1.280 11 H -0.266 1.266 12 H -0.274 1.274 13 O -0.399 6.399 14 C 0.062 3.938 15 C -0.082 4.082 16 C -0.160 4.160 17 C -0.185 4.185 18 C -0.168 4.168 19 H 0.052 0.948 20 H 0.072 0.928 21 H 0.070 0.930 22 H 0.010 0.990 23 H -0.011 1.011 24 H 0.254 0.746 25 H 0.037 0.963 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.906 5.868 15.880 17.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 H 0.067 0.933 4 C -0.029 4.029 5 C -0.641 4.641 6 H 0.062 0.938 7 C -0.238 4.238 8 N -0.578 5.578 9 Si 0.937 3.063 10 H -0.206 1.206 11 H -0.191 1.191 12 H -0.199 1.199 13 O -0.320 6.320 14 C -0.015 4.015 15 C -0.120 4.120 16 C -0.178 4.178 17 C -0.222 4.222 18 C -0.205 4.205 19 H 0.071 0.929 20 H 0.091 0.909 21 H 0.088 0.912 22 H 0.028 0.972 23 H 0.007 0.993 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.134 0.866 30 H 0.104 0.896 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.565 5.251 15.001 15.904 hybrid contribution -1.578 0.448 0.498 1.714 sum -2.143 5.699 15.499 16.652 Atomic orbital electron populations 1.22228 0.94881 1.02219 1.02654 1.21993 0.93344 0.94885 0.85322 0.93327 1.19314 0.96282 0.94592 0.92720 1.22318 0.93278 1.37919 1.10542 0.93764 1.27416 1.11422 0.92693 0.92296 1.70918 1.09625 1.41679 1.35529 0.82960 0.69128 0.77581 0.76626 1.20572 1.19137 1.19914 1.87916 1.87110 1.36321 1.20604 1.22576 0.99341 0.93139 0.86403 1.21012 1.01223 0.97695 0.92060 1.22150 0.99648 1.01829 0.94182 1.23137 0.92174 1.02632 1.04285 1.23048 1.02878 0.99723 0.94819 0.92919 0.90880 0.91151 0.97224 0.99285 0.93635 0.94457 0.92201 0.91058 0.92799 0.86643 0.89577 0.87426 0.86910 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.66 9.53 71.98 0.69 -4.97 16 2 C 0.10 4.50 2.67 30.60 0.08 4.59 16 3 H 0.05 2.10 7.79 -2.39 -0.02 2.08 16 4 C 0.01 0.43 4.00 29.85 0.12 0.55 16 5 C -0.60 -36.28 8.88 25.60 0.23 -36.05 16 6 H 0.04 2.63 7.74 -2.91 -0.02 2.61 16 7 C -0.04 -2.52 5.46 84.65 0.46 -2.06 16 8 N -0.94 -60.34 13.65 21.45 0.29 -60.05 16 9 Si 1.12 52.39 29.90 68.60 2.05 54.44 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 13 O -0.40 -17.67 9.74 -148.98 -1.45 -19.12 16 14 C 0.06 2.08 5.71 71.98 0.41 2.49 16 15 C -0.08 -2.39 5.86 30.59 0.18 -2.21 16 16 C -0.16 -3.54 5.74 -10.79 -0.06 -3.61 16 17 C -0.19 -3.76 10.18 30.59 0.31 -3.45 16 18 C -0.17 -3.07 10.25 30.59 0.31 -2.76 16 19 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 20 H 0.07 2.10 7.87 -2.39 -0.02 2.08 16 21 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 22 H 0.01 0.54 8.01 -2.39 -0.02 0.52 16 23 H -0.01 -0.67 8.00 -2.39 -0.02 -0.69 16 24 H 0.25 16.50 7.22 -92.71 -0.67 15.83 16 25 H 0.04 1.28 8.08 -2.39 -0.02 1.26 16 26 H 0.06 1.71 7.87 -2.38 -0.02 1.69 16 27 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.05 1.74 7.88 -2.38 -0.02 1.73 16 29 H 0.12 2.27 8.07 -2.39 -0.02 2.25 16 30 H 0.09 1.92 8.03 -2.39 -0.02 1.90 16 31 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -68.95 278.30 4.76 -64.19 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: 1.14 Total: 8.02 kcal Atomic # 6 Polarization: -50.21 SS G_CDS: 2.73 Total: -47.48 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: 0.29 Total: -60.05 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -1.45 Total: -19.12 kcal Atomic # 14 Polarization: 52.39 SS G_CDS: 2.05 Total: 54.44 kcal Total: -68.95 4.76 -64.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695816105.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.369 kcal (2) G-P(sol) polarization free energy of solvation -68.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds