Wall clock time and date at job start Mon Mar 30 2020 02:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46830 * 2 1 4 4 C 1.53007 * 109.46992 * 119.99965 * 2 1 3 5 5 C 1.50701 * 109.47051 * 185.00126 * 4 2 1 6 6 H 1.08004 * 119.99962 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00339 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99503 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00293 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47402 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47464 * 119.99842 * 9 7 5 12 12 H 1.48502 * 109.46873 * 240.00148 * 9 7 5 13 13 O 1.42899 * 109.47197 * 239.99820 * 2 1 3 14 14 C 1.42903 * 113.99629 * 90.00111 * 13 2 1 15 15 C 1.53000 * 109.46726 * 180.02562 * 14 13 2 16 16 C 1.53001 * 109.46886 * 180.02562 * 15 14 13 17 17 C 1.53007 * 117.49608 * 243.61936 * 16 15 14 18 18 C 1.53002 * 59.99905 * 252.51042 * 17 16 15 19 19 H 1.08994 * 109.46766 * 59.99821 * 1 2 3 20 20 H 1.09001 * 109.46830 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.46899 * 300.00098 * 1 2 3 22 22 H 1.09001 * 109.46932 * 304.99641 * 4 2 1 23 23 H 1.08998 * 109.47012 * 65.00037 * 4 2 1 24 24 H 0.97003 * 119.99667 * 179.97438 * 8 7 5 25 25 H 1.09002 * 109.47382 * 59.99956 * 14 13 2 26 26 H 1.09001 * 109.46938 * 299.99942 * 14 13 2 27 27 H 1.09001 * 109.47194 * 299.99575 * 15 14 13 28 28 H 1.08992 * 109.47399 * 59.99748 * 15 14 13 29 29 H 1.08995 * 115.55278 * 29.32366 * 16 15 14 30 30 H 1.09004 * 117.49653 * 0.02562 * 17 16 15 31 31 H 1.08997 * 117.49509 * 145.01856 * 17 16 15 32 32 H 1.09003 * 117.49376 * 252.51123 * 18 17 16 33 33 H 1.08991 * 117.49891 * 107.49195 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6149 1.3128 6 1 4.0790 -0.0854 0.5397 7 6 4.2304 -1.1926 2.3584 8 7 3.5763 -1.8360 3.3006 9 14 6.0920 -1.0601 2.4375 10 1 6.5838 -0.2908 1.2663 11 1 6.4860 -0.3638 3.6885 12 1 6.6862 -2.4210 2.4201 13 8 2.0064 -0.6737 -1.1667 14 6 2.2001 0.1830 -2.2940 15 6 2.7080 -0.6408 -3.4791 16 6 2.9160 0.2764 -4.6859 17 6 2.0489 0.0259 -5.9214 18 6 3.5346 -0.3390 -5.9427 19 1 -0.3632 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.6054 -0.2617 2.1370 23 1 1.7517 -1.7715 1.2056 24 1 4.0607 -2.2428 4.0361 25 1 2.9320 0.9514 -2.0450 26 1 1.2538 0.6547 -2.5588 27 1 3.6542 -1.1128 -3.2146 28 1 1.9759 -1.4089 -3.7280 29 1 3.1735 1.3095 -4.4524 30 1 1.3299 -0.7920 -5.8742 31 1 1.7356 0.8944 -6.5008 32 1 4.1987 0.2893 -6.5362 33 1 3.7933 -1.3973 -5.9098 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695816106.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:43 Heat of formation + Delta-G solvation = -48.090043 kcal Electronic energy + Delta-G solvation = -12519.173056 eV Core-core repulsion = 10352.019657 eV Total energy + Delta-G solvation = -2167.153398 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.04832 -37.01405 -33.27267 -31.61227 -29.60996 -27.31708 -23.48537 -22.67330 -22.35485 -20.56714 -19.78787 -16.27916 -15.97809 -15.73039 -14.91010 -14.51685 -13.98007 -13.51302 -13.02848 -12.31915 -11.99484 -11.76249 -11.63323 -11.45014 -11.32899 -11.13773 -10.85066 -10.67163 -10.51710 -10.20745 -10.07095 -9.77616 -9.33955 -9.08078 -8.53190 -8.30125 -5.92857 -3.92749 3.35907 3.42964 3.47888 3.76820 4.30049 4.52745 4.88046 4.92632 5.04322 5.34147 5.44174 5.56031 5.57594 5.76471 5.81209 5.84141 5.97858 6.03417 6.06152 6.06408 6.19094 6.35431 6.40837 6.50922 6.79608 6.99048 7.59502 7.72436 8.05326 8.25937 8.50696 9.11626 9.69341 11.19004 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.033301 B = 0.007972 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.602408 B = 3511.296027 C = 4210.921754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.091 3.909 3 H 0.045 0.955 4 C 0.023 3.977 5 C -0.505 4.505 6 H 0.055 0.945 7 C 0.053 3.947 8 N -0.899 5.899 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 O -0.370 6.370 14 C 0.066 3.934 15 C -0.088 4.088 16 C -0.148 4.148 17 C -0.183 4.183 18 C -0.181 4.181 19 H 0.039 0.961 20 H 0.057 0.943 21 H 0.059 0.941 22 H 0.030 0.970 23 H 0.025 0.975 24 H 0.259 0.741 25 H 0.042 0.958 26 H 0.035 0.965 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.923 4.374 -13.903 14.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.034 3.966 3 H 0.064 0.936 4 C -0.014 4.014 5 C -0.543 4.543 6 H 0.073 0.927 7 C -0.147 4.147 8 N -0.539 5.539 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 O -0.289 6.289 14 C -0.011 4.011 15 C -0.125 4.125 16 C -0.166 4.166 17 C -0.220 4.220 18 C -0.218 4.218 19 H 0.059 0.941 20 H 0.076 0.924 21 H 0.078 0.922 22 H 0.048 0.952 23 H 0.044 0.956 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.122 0.878 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.861 4.081 -13.744 14.620 hybrid contribution 0.952 0.334 0.110 1.015 sum -1.910 4.415 -13.634 14.458 Atomic orbital electron populations 1.22330 0.98269 1.01850 1.00453 1.22375 0.90921 0.96076 0.87218 0.93647 1.19257 0.96283 0.96371 0.89521 1.21188 0.91962 1.33725 1.07424 0.92663 1.25001 0.98301 0.95534 0.95826 1.69975 1.35281 1.36489 1.12196 0.86544 0.86030 0.77737 0.77745 1.19809 1.21149 1.21063 1.87981 1.86702 1.34613 1.19603 1.22317 0.98230 0.93258 0.87335 1.21065 1.02286 0.97286 0.91889 1.22234 1.04503 1.00384 0.89454 1.23044 0.93829 1.03301 1.01829 1.22951 0.95840 1.01729 1.01272 0.94145 0.92398 0.92233 0.95234 0.95640 0.93167 0.93988 0.94637 0.90590 0.91354 0.87819 0.88783 0.89132 0.89005 0.88728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 9.53 37.16 0.35 -2.77 16 2 C 0.09 2.01 2.67 -26.73 -0.07 1.94 16 3 H 0.05 0.97 7.79 -51.93 -0.40 0.57 16 4 C 0.02 0.61 4.68 -27.88 -0.13 0.47 16 5 C -0.50 -14.75 8.88 -34.44 -0.31 -15.06 16 6 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 9 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 10 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 13 O -0.37 -8.11 9.74 -35.23 -0.34 -8.45 16 14 C 0.07 1.14 5.71 37.16 0.21 1.35 16 15 C -0.09 -1.31 5.86 -26.73 -0.16 -1.46 16 16 C -0.15 -1.79 5.74 -90.61 -0.52 -2.31 16 17 C -0.18 -1.90 10.18 -26.73 -0.27 -2.17 16 18 C -0.18 -1.90 10.25 -26.73 -0.27 -2.18 16 19 H 0.04 0.64 7.87 -51.93 -0.41 0.23 16 20 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 21 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 22 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.04 0.72 8.09 -51.93 -0.42 0.30 16 26 H 0.04 0.55 7.87 -51.93 -0.41 0.15 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.07 1.00 7.88 -51.93 -0.41 0.59 16 29 H 0.10 1.21 8.07 -51.93 -0.42 0.79 16 30 H 0.09 0.96 8.03 -51.93 -0.42 0.54 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 279.62 15.07 4.21 4.21 Total: -1.00 -31.03 279.62 -7.49 -38.52 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -5.81 Total: -3.96 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -1.26 Total: -20.71 kcal Atomic # 7 Polarization: -27.62 SS G_CDS: 0.74 Total: -26.88 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -0.34 Total: -8.45 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.03 -7.49 -38.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695816106.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.574 kcal (2) G-P(sol) polarization free energy of solvation -31.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds