Wall clock time and date at job start Mon Mar 30 2020 02:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46830 * 2 1 4 4 C 1.53007 * 109.46992 * 119.99965 * 2 1 3 5 5 C 1.50701 * 109.47051 * 185.00126 * 4 2 1 6 6 H 1.08004 * 119.99962 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00339 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99503 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00293 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47402 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47464 * 119.99842 * 9 7 5 12 12 H 1.48502 * 109.46873 * 240.00148 * 9 7 5 13 13 O 1.42899 * 109.47197 * 239.99820 * 2 1 3 14 14 C 1.42903 * 113.99629 * 90.00111 * 13 2 1 15 15 C 1.53000 * 109.46726 * 180.02562 * 14 13 2 16 16 C 1.53001 * 109.46886 * 180.02562 * 15 14 13 17 17 C 1.53007 * 117.49608 * 243.61936 * 16 15 14 18 18 C 1.53002 * 59.99905 * 252.51042 * 17 16 15 19 19 H 1.08994 * 109.46766 * 59.99821 * 1 2 3 20 20 H 1.09001 * 109.46830 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.46899 * 300.00098 * 1 2 3 22 22 H 1.09001 * 109.46932 * 304.99641 * 4 2 1 23 23 H 1.08998 * 109.47012 * 65.00037 * 4 2 1 24 24 H 0.97003 * 119.99667 * 179.97438 * 8 7 5 25 25 H 1.09002 * 109.47382 * 59.99956 * 14 13 2 26 26 H 1.09001 * 109.46938 * 299.99942 * 14 13 2 27 27 H 1.09001 * 109.47194 * 299.99575 * 15 14 13 28 28 H 1.08992 * 109.47399 * 59.99748 * 15 14 13 29 29 H 1.08995 * 115.55278 * 29.32366 * 16 15 14 30 30 H 1.09004 * 117.49653 * 0.02562 * 17 16 15 31 31 H 1.08997 * 117.49509 * 145.01856 * 17 16 15 32 32 H 1.09003 * 117.49376 * 252.51123 * 18 17 16 33 33 H 1.08991 * 117.49891 * 107.49195 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6149 1.3128 6 1 4.0790 -0.0854 0.5397 7 6 4.2304 -1.1926 2.3584 8 7 3.5763 -1.8360 3.3006 9 14 6.0920 -1.0601 2.4375 10 1 6.5838 -0.2908 1.2663 11 1 6.4860 -0.3638 3.6885 12 1 6.6862 -2.4210 2.4201 13 8 2.0064 -0.6737 -1.1667 14 6 2.2001 0.1830 -2.2940 15 6 2.7080 -0.6408 -3.4791 16 6 2.9160 0.2764 -4.6859 17 6 2.0489 0.0259 -5.9214 18 6 3.5346 -0.3390 -5.9427 19 1 -0.3632 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.6054 -0.2617 2.1370 23 1 1.7517 -1.7715 1.2056 24 1 4.0607 -2.2428 4.0361 25 1 2.9320 0.9514 -2.0450 26 1 1.2538 0.6547 -2.5588 27 1 3.6542 -1.1128 -3.2146 28 1 1.9759 -1.4089 -3.7280 29 1 3.1735 1.3095 -4.4524 30 1 1.3299 -0.7920 -5.8742 31 1 1.7356 0.8944 -6.5008 32 1 4.1987 0.2893 -6.5362 33 1 3.7933 -1.3973 -5.9098 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695816106.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:43 Heat of formation + Delta-G solvation = -65.981510 kcal Electronic energy + Delta-G solvation = -12519.948888 eV Core-core repulsion = 10352.019657 eV Total energy + Delta-G solvation = -2167.929231 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.43730 -38.20455 -35.32244 -33.39284 -31.00821 -29.29170 -25.32458 -24.14089 -23.18511 -22.04076 -21.13599 -18.51220 -17.58210 -16.86689 -16.50927 -16.20478 -15.18450 -14.96248 -14.64991 -13.95211 -13.71230 -13.38643 -13.29019 -13.04110 -12.64677 -12.40694 -12.36143 -12.29363 -12.15262 -11.93044 -11.27219 -11.21533 -11.08800 -10.78062 -10.57374 -10.19839 -8.18745 -6.27419 1.38193 1.39375 1.52433 2.41629 2.80853 2.99224 3.16246 3.92020 4.00334 4.05799 4.20426 4.24233 4.35187 4.45271 4.52259 4.57882 4.77301 4.80591 4.83782 5.01162 5.06418 5.12583 5.20100 5.25955 5.29405 5.38301 5.44666 5.53813 5.80644 6.24350 6.63324 6.85608 7.39594 8.93673 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.033301 B = 0.007972 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.602408 B = 3511.296027 C = 4210.921754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.096 3.904 3 H 0.050 0.950 4 C 0.024 3.976 5 C -0.525 4.525 6 H 0.053 0.947 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.963 3.037 10 H -0.265 1.265 11 H -0.274 1.274 12 H -0.279 1.279 13 O -0.399 6.399 14 C 0.062 3.938 15 C -0.082 4.082 16 C -0.164 4.164 17 C -0.172 4.172 18 C -0.177 4.177 19 H 0.069 0.931 20 H 0.051 0.949 21 H 0.069 0.931 22 H 0.014 0.986 23 H -0.008 1.008 24 H 0.263 0.737 25 H 0.039 0.961 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.506 5.353 -15.457 16.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.068 0.932 4 C -0.013 4.013 5 C -0.563 4.563 6 H 0.071 0.929 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.788 3.212 10 H -0.189 1.189 11 H -0.200 1.200 12 H -0.205 1.205 13 O -0.319 6.319 14 C -0.015 4.015 15 C -0.120 4.120 16 C -0.182 4.182 17 C -0.209 4.209 18 C -0.214 4.214 19 H 0.088 0.912 20 H 0.070 0.930 21 H 0.088 0.912 22 H 0.032 0.968 23 H 0.011 0.989 24 H 0.072 0.928 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.127 0.873 30 H 0.113 0.887 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.452 5.069 -15.312 16.314 hybrid contribution 0.803 0.014 0.573 0.987 sum -1.649 5.083 -14.738 15.677 Atomic orbital electron populations 1.22215 0.95184 1.02101 1.02433 1.22146 0.93287 0.95096 0.85587 0.93204 1.19151 0.95522 0.94822 0.91794 1.21528 0.93350 1.33915 1.07540 0.92893 1.25936 1.03711 0.94970 0.95330 1.70097 1.37468 1.37190 1.12845 0.85425 0.79496 0.78009 0.78283 1.18934 1.19969 1.20482 1.87924 1.87090 1.36293 1.20592 1.22557 0.99362 0.93138 0.86421 1.21004 1.01118 0.97585 0.92252 1.22140 1.06938 1.00105 0.88995 1.23136 0.93706 1.03887 1.00164 1.23050 0.96493 1.01871 0.99958 0.91166 0.93033 0.91203 0.96825 0.98932 0.92802 0.94318 0.92453 0.92490 0.91352 0.87311 0.88683 0.87384 0.87444 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.70 9.53 71.98 0.69 -5.01 16 2 C 0.10 4.23 2.67 30.60 0.08 4.31 16 3 H 0.05 2.11 7.79 -2.39 -0.02 2.10 16 4 C 0.02 1.33 4.68 29.85 0.14 1.47 16 5 C -0.53 -31.25 8.88 25.60 0.23 -31.02 16 6 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 7 C 0.00 -0.15 5.46 84.65 0.46 0.32 16 8 N -0.94 -58.40 13.29 21.45 0.28 -58.11 16 9 Si 0.96 45.89 29.54 68.60 2.03 47.91 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 O -0.40 -17.51 9.74 -148.98 -1.45 -18.96 16 14 C 0.06 2.06 5.71 71.98 0.41 2.48 16 15 C -0.08 -2.38 5.86 30.59 0.18 -2.20 16 16 C -0.16 -3.65 5.74 -10.79 -0.06 -3.72 16 17 C -0.17 -3.11 10.18 30.60 0.31 -2.80 16 18 C -0.18 -3.32 10.25 30.60 0.31 -3.00 16 19 H 0.07 2.04 7.87 -2.39 -0.02 2.03 16 20 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 21 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 22 H 0.01 0.78 8.14 -2.39 -0.02 0.76 16 23 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 24 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 25 H 0.04 1.30 8.09 -2.39 -0.02 1.29 16 26 H 0.06 1.66 7.87 -2.39 -0.02 1.64 16 27 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.07 1.94 7.88 -2.39 -0.02 1.92 16 29 H 0.11 2.31 8.07 -2.39 -0.02 2.29 16 30 H 0.09 1.71 8.03 -2.38 -0.02 1.69 16 31 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -66.77 279.62 4.65 -62.12 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 1.04 Total: 6.21 kcal Atomic # 6 Polarization: -41.92 SS G_CDS: 2.75 Total: -39.17 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.28 Total: -58.11 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -1.45 Total: -18.96 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -66.77 4.65 -62.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695816106.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.863 kcal (2) G-P(sol) polarization free energy of solvation -66.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds