Wall clock time and date at job start Mon Mar 30 2020 02:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00042 * 2 1 4 4 H 1.48508 * 109.47179 * 270.00542 * 3 2 1 5 5 H 1.48507 * 109.47135 * 29.99950 * 3 2 1 6 6 H 1.48494 * 109.47644 * 150.00275 * 3 2 1 7 7 C 1.37876 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00150 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00116 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.46990 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99573 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.46622 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.46689 * 180.02562 * 12 11 10 14 14 N 1.46906 * 109.46765 * 180.02562 * 13 12 11 15 15 C 1.47477 * 110.99983 * 74.02777 * 14 13 12 16 16 C 1.53508 * 87.93521 * 138.70217 * 15 14 13 17 17 C 1.47480 * 110.99716 * 169.99624 * 14 13 12 18 18 H 0.96998 * 120.00296 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47064 * 60.00368 * 9 7 2 20 20 H 1.09000 * 109.47099 * 300.00095 * 9 7 2 21 21 H 1.00896 * 111.00309 * 56.04484 * 10 9 7 22 22 H 1.08990 * 109.47358 * 299.99539 * 11 10 9 23 23 H 1.09004 * 109.47457 * 60.00221 * 11 10 9 24 24 H 1.09006 * 109.47203 * 299.99590 * 12 11 10 25 25 H 1.08995 * 109.47152 * 60.00028 * 12 11 10 26 26 H 1.09006 * 109.46807 * 299.99641 * 13 12 11 27 27 H 1.08995 * 109.47458 * 60.00024 * 13 12 11 28 28 H 1.08999 * 113.47600 * 253.47272 * 15 14 13 29 29 H 1.09003 * 113.47856 * 23.93811 * 15 14 13 30 30 H 1.08997 * 114.17600 * 220.33180 * 16 15 14 31 31 H 1.09001 * 114.34605 * 87.62977 * 16 15 14 32 32 H 1.08998 * 113.47575 * 336.06519 * 17 14 13 33 33 H 1.08998 * 113.47206 * 106.53062 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5054 -4.9070 -0.0011 12 6 2.5304 -6.0430 -0.0018 13 6 1.8009 -7.3880 -0.0031 14 7 2.7851 -8.4787 -0.0030 15 6 3.4195 -8.6181 1.3210 16 6 3.3095 -10.1398 1.1519 17 6 2.1322 -9.7795 0.2349 18 1 -0.4850 0.8400 0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6247 -2.5571 0.8897 21 1 2.8406 -3.5487 0.7808 22 1 0.8803 -4.9818 0.8885 23 1 0.8808 -4.9813 -0.8914 24 1 3.1552 -5.9682 -0.8918 25 1 3.1553 -5.9690 0.8882 26 1 1.1758 -7.4631 0.8868 27 1 1.1763 -7.4618 -0.8932 28 1 4.4477 -8.2575 1.3499 29 1 2.8119 -8.2269 2.1370 30 1 3.0221 -10.6702 2.0597 31 1 4.1538 -10.5968 0.6355 32 1 1.1811 -9.6982 0.7611 33 1 2.0695 -10.4034 -0.6567 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697437813.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:52 Heat of formation + Delta-G solvation = 23.998787 kcal Electronic energy + Delta-G solvation = -12205.284619 eV Core-core repulsion = 10073.549978 eV Total energy + Delta-G solvation = -2131.734641 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.05400 -35.86605 -33.17906 -31.75206 -28.50972 -26.21033 -25.84430 -23.21202 -21.27706 -20.85045 -19.99082 -16.44565 -16.13428 -15.86065 -15.20284 -14.75556 -14.29398 -13.77712 -13.07859 -12.85173 -12.67715 -12.06985 -11.91405 -11.40342 -11.34202 -11.00684 -10.95270 -10.79528 -10.61551 -10.49616 -10.31507 -9.83392 -9.15766 -8.97935 -8.46196 -7.26621 -6.01694 -4.03668 3.33727 3.39085 3.43223 3.89846 4.29844 4.44726 4.68959 4.89935 5.09618 5.22282 5.25904 5.34143 5.44655 5.52921 5.57132 5.62715 5.73446 5.79321 5.94803 5.98314 6.09494 6.30918 6.54424 6.60574 6.99523 7.27717 7.43982 7.80628 8.14849 8.42359 8.64270 9.05827 9.61251 11.09584 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.105317 B = 0.004853 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 265.799879 B = 5767.791568 C = 5924.016741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.691 5.691 11 C 0.061 3.939 12 C -0.109 4.109 13 C 0.021 3.979 14 N -0.473 5.473 15 C -0.003 4.003 16 C -0.148 4.148 17 C -0.005 4.005 18 H 0.261 0.739 19 H 0.028 0.972 20 H -0.015 1.015 21 H 0.327 0.673 22 H 0.014 0.986 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.055 0.945 26 H 0.039 0.961 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.898 -17.334 2.922 18.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.321 5.321 11 C -0.070 4.070 12 C -0.147 4.147 13 C -0.108 4.108 14 N -0.195 5.195 15 C -0.132 4.132 16 C -0.186 4.186 17 C -0.134 4.134 18 H 0.071 0.929 19 H 0.046 0.954 20 H 0.003 0.997 21 H 0.144 0.856 22 H 0.032 0.968 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.085 0.915 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.194 -17.038 1.614 17.621 hybrid contribution -0.659 0.933 1.592 1.959 sum 3.535 -16.106 3.205 16.798 Atomic orbital electron populations 1.69967 1.06111 1.26779 1.51011 1.25002 0.94888 0.99409 0.95342 0.86465 0.79662 0.82914 0.78155 1.20575 1.21304 1.19830 1.21209 0.93552 0.90272 1.50244 0.91929 1.19562 0.90639 0.87461 0.95727 1.60638 1.21246 1.01323 1.48866 1.21835 0.95262 0.90351 0.99540 1.21484 0.98492 0.91947 1.02795 1.22680 0.94504 0.92451 1.01138 1.68953 1.21095 1.01656 1.27807 1.23760 1.01595 0.95814 0.92036 1.23113 0.99184 0.96448 0.99855 1.23765 0.96783 0.93133 0.99729 0.92921 0.95428 0.99689 0.85635 0.96765 0.91845 0.90532 0.92597 0.94316 0.90502 0.89768 0.91369 0.90903 0.89028 0.91506 0.89907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -15.00 9.32 -34.44 -0.32 -15.32 16 8 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 9 C 0.19 5.25 5.44 -4.97 -0.03 5.23 16 10 N -0.69 -15.54 6.49 -115.05 -0.75 -16.29 16 11 C 0.06 1.13 5.69 -3.82 -0.02 1.10 16 12 C -0.11 -1.66 5.58 -26.72 -0.15 -1.81 16 13 C 0.02 0.28 4.82 -3.82 -0.02 0.26 16 14 N -0.47 -5.77 6.41 -244.68 -1.57 -7.34 16 15 C 0.00 -0.03 7.00 -7.56 -0.05 -0.08 16 16 C -0.15 -1.25 8.47 -26.20 -0.22 -1.47 16 17 C -0.01 -0.05 7.70 -7.55 -0.06 -0.11 16 18 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 19 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 20 H -0.01 -0.42 8.14 -51.93 -0.42 -0.84 16 21 H 0.33 7.01 8.72 -39.29 -0.34 6.67 16 22 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 23 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 24 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 25 H 0.06 0.83 7.67 -51.93 -0.40 0.43 16 26 H 0.04 0.48 7.56 -51.93 -0.39 0.09 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.69 7.70 -51.93 -0.40 0.29 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.60 7.77 -51.93 -0.40 0.20 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 273.49 15.07 4.12 4.12 Total: -1.00 -30.79 273.49 -9.16 -39.94 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -5.71 Total: -0.10 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -0.97 Total: -10.70 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: -1.58 Total: -50.28 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.79 -9.16 -39.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697437813.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.940 kcal (2) G-P(sol) polarization free energy of solvation -30.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds