Wall clock time and date at job start Mon Mar 30 2020 02:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86809 * 119.99844 * 2 1 4 4 H 1.48499 * 109.46966 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47045 * 299.99701 * 3 2 1 6 6 H 1.48501 * 109.47145 * 60.00056 * 3 2 1 7 7 C 1.37882 * 120.00353 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00032 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99561 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46861 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.47234 * 179.97438 * 10 9 7 12 12 C 1.46902 * 110.99800 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.46626 * 179.97438 * 12 11 10 14 14 N 1.46902 * 109.46626 * 179.97438 * 13 12 11 15 15 C 1.47476 * 111.00115 * 74.03357 * 14 13 12 16 16 C 1.53510 * 87.93628 * 138.70040 * 15 14 13 17 17 C 1.47479 * 110.99664 * 170.00118 * 14 13 12 18 18 H 0.96997 * 120.00566 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.47042 * 60.00010 * 9 7 2 20 20 H 1.08989 * 109.47525 * 299.99557 * 9 7 2 21 21 H 1.08993 * 109.47319 * 59.99954 * 10 9 7 22 22 H 1.09002 * 109.47089 * 300.00009 * 10 9 7 23 23 H 1.00898 * 110.99743 * 56.04920 * 11 10 9 24 24 H 1.09000 * 109.47263 * 60.00269 * 12 11 10 25 25 H 1.09001 * 109.47582 * 299.99548 * 12 11 10 26 26 H 1.08993 * 109.46955 * 300.00347 * 13 12 11 27 27 H 1.09000 * 109.47050 * 60.00176 * 13 12 11 28 28 H 1.08998 * 113.47495 * 253.46917 * 15 14 13 29 29 H 1.08998 * 113.47672 * 23.92839 * 15 14 13 30 30 H 1.09000 * 114.16725 * 220.33198 * 16 15 14 31 31 H 1.09000 * 114.34691 * 87.63298 * 16 15 14 32 32 H 1.09004 * 113.47955 * 336.06580 * 17 14 13 33 33 H 1.08997 * 113.47804 * 106.53006 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 2.4354 -6.0758 0.0006 13 6 1.6353 -7.3800 0.0019 14 7 2.5599 -8.5216 0.0007 15 6 3.1888 -8.6938 1.3234 16 6 2.9975 -10.2076 1.1557 17 6 1.8391 -9.7856 0.2409 18 1 -0.4851 0.8400 0.0004 19 1 0.6247 -2.5570 -0.8897 20 1 0.6241 -2.5567 0.8902 21 1 2.8719 -3.6043 0.8904 22 1 2.8720 -3.6042 -0.8895 23 1 0.8742 -4.9846 -0.7800 24 1 3.0640 -6.0348 0.8901 25 1 3.0627 -6.0349 -0.8899 26 1 1.0083 -7.4206 0.8925 27 1 1.0064 -7.4213 -0.8874 28 1 4.2348 -8.3886 1.3499 29 1 2.6047 -8.2701 2.1404 30 1 2.6840 -10.7213 2.0646 31 1 3.8151 -10.7092 0.6379 32 1 0.8947 -9.6534 0.7690 33 1 1.7413 -10.4058 -0.6500 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697872823.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:54 Heat of formation + Delta-G solvation = 24.364172 kcal Electronic energy + Delta-G solvation = -12205.542080 eV Core-core repulsion = 10073.823283 eV Total energy + Delta-G solvation = -2131.718797 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.05241 -36.06107 -33.15916 -31.40077 -28.90821 -26.20925 -25.63816 -23.53803 -21.47334 -20.47922 -19.96149 -16.37300 -16.18443 -15.92065 -15.24795 -14.84630 -14.37448 -13.46905 -13.32886 -12.99870 -12.58458 -12.21247 -12.02712 -11.51921 -11.20066 -11.00369 -10.94391 -10.86106 -10.58366 -10.47270 -9.97200 -9.36296 -9.12188 -8.99264 -8.34648 -7.81818 -5.98830 -4.01322 3.32165 3.39321 3.43723 3.84560 4.29437 4.45845 4.68764 4.83103 5.01994 5.25060 5.27819 5.35105 5.37278 5.50493 5.57566 5.62492 5.71652 5.89044 5.97244 6.09887 6.30101 6.35986 6.45052 6.95036 6.99374 7.48539 7.74069 7.83704 7.96930 8.09248 8.44887 9.06157 9.62491 11.12749 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.107747 B = 0.004838 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 259.806323 B = 5786.172713 C = 5932.945255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.024 3.976 10 C 0.067 3.933 11 N -0.693 5.693 12 C 0.064 3.936 13 C 0.022 3.978 14 N -0.475 5.475 15 C -0.003 4.003 16 C -0.148 4.148 17 C -0.003 4.003 18 H 0.260 0.740 19 H 0.014 0.986 20 H 0.025 0.975 21 H 0.057 0.943 22 H 0.016 0.984 23 H 0.336 0.664 24 H 0.065 0.935 25 H 0.030 0.970 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.033 -17.413 1.367 17.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.061 4.061 11 N -0.325 5.325 12 C -0.066 4.066 13 C -0.107 4.107 14 N -0.198 5.198 15 C -0.132 4.132 16 C -0.186 4.186 17 C -0.132 4.132 18 H 0.070 0.930 19 H 0.032 0.968 20 H 0.043 0.957 21 H 0.076 0.924 22 H 0.034 0.966 23 H 0.153 0.847 24 H 0.083 0.917 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.196 -17.164 1.435 17.727 hybrid contribution 0.146 1.052 -0.249 1.091 sum 4.342 -16.111 1.186 16.728 Atomic orbital electron populations 1.69978 1.06053 1.26487 1.50789 1.25007 0.94842 0.99243 0.95295 0.86526 0.80091 0.83738 0.77580 1.19751 1.21011 1.20966 1.21223 0.93048 0.91004 1.50717 0.92680 1.19081 0.94043 0.90468 0.97722 1.22150 0.96964 0.88312 0.98687 1.60574 1.19920 1.02241 1.49717 1.21769 0.94631 0.89611 1.00553 1.22653 0.95008 0.91325 1.01725 1.68902 1.21105 1.01725 1.28085 1.23777 1.01672 0.95716 0.92085 1.23113 0.99115 0.96452 0.99904 1.23755 0.96614 0.93106 0.99718 0.93042 0.96776 0.95657 0.92410 0.96573 0.84738 0.91650 0.95134 0.93132 0.90809 0.89862 0.91047 0.90809 0.89084 0.91316 0.89936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.30 13.28 55.43 0.74 -26.56 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.90 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.65 5.23 -27.89 -0.15 0.50 16 10 C 0.07 1.47 5.62 -3.82 -0.02 1.45 16 11 N -0.69 -12.97 6.50 -113.77 -0.74 -13.71 16 12 C 0.06 1.01 5.79 -3.82 -0.02 0.99 16 13 C 0.02 0.29 5.08 -3.82 -0.02 0.27 16 14 N -0.48 -5.79 6.41 -244.70 -1.57 -7.36 16 15 C 0.00 -0.04 7.00 -7.56 -0.05 -0.09 16 16 C -0.15 -1.25 8.47 -26.20 -0.22 -1.47 16 17 C 0.00 -0.03 7.70 -7.56 -0.06 -0.08 16 18 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 19 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 20 H 0.03 0.72 8.14 -51.94 -0.42 0.30 16 21 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 22 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.34 6.02 8.73 -39.29 -0.34 5.67 16 24 H 0.07 1.04 7.67 -51.93 -0.40 0.64 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.68 7.56 -51.93 -0.39 0.29 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.75 7.70 -51.93 -0.40 0.35 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.63 7.77 -51.93 -0.40 0.22 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 273.44 15.07 4.12 4.12 Total: -1.00 -30.60 273.44 -9.13 -39.73 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -5.71 Total: -0.86 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -0.95 Total: -12.27 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: -1.57 Total: -47.63 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.60 -9.13 -39.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697872823.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.099 kcal (2) G-P(sol) polarization free energy of solvation -30.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds