Wall clock time and date at job start Mon Mar 30 2020 02:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86809 * 119.99844 * 2 1 4 4 H 1.48499 * 109.46966 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47045 * 299.99701 * 3 2 1 6 6 H 1.48501 * 109.47145 * 60.00056 * 3 2 1 7 7 C 1.37882 * 120.00353 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00032 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99561 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46861 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.47234 * 179.97438 * 10 9 7 12 12 C 1.46902 * 110.99800 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.46626 * 179.97438 * 12 11 10 14 14 N 1.46902 * 109.46626 * 179.97438 * 13 12 11 15 15 C 1.47476 * 111.00115 * 74.03357 * 14 13 12 16 16 C 1.53510 * 87.93628 * 138.70040 * 15 14 13 17 17 C 1.47479 * 110.99664 * 170.00118 * 14 13 12 18 18 H 0.96997 * 120.00566 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.47042 * 60.00010 * 9 7 2 20 20 H 1.08989 * 109.47525 * 299.99557 * 9 7 2 21 21 H 1.08993 * 109.47319 * 59.99954 * 10 9 7 22 22 H 1.09002 * 109.47089 * 300.00009 * 10 9 7 23 23 H 1.00898 * 110.99743 * 56.04920 * 11 10 9 24 24 H 1.09000 * 109.47263 * 60.00269 * 12 11 10 25 25 H 1.09001 * 109.47582 * 299.99548 * 12 11 10 26 26 H 1.08993 * 109.46955 * 300.00347 * 13 12 11 27 27 H 1.09000 * 109.47050 * 60.00176 * 13 12 11 28 28 H 1.08998 * 113.47495 * 253.46917 * 15 14 13 29 29 H 1.08998 * 113.47672 * 23.92839 * 15 14 13 30 30 H 1.09000 * 114.16725 * 220.33198 * 16 15 14 31 31 H 1.09000 * 114.34691 * 87.63298 * 16 15 14 32 32 H 1.09004 * 113.47955 * 336.06580 * 17 14 13 33 33 H 1.08997 * 113.47804 * 106.53006 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 2.4354 -6.0758 0.0006 13 6 1.6353 -7.3800 0.0019 14 7 2.5599 -8.5216 0.0007 15 6 3.1888 -8.6938 1.3234 16 6 2.9975 -10.2076 1.1557 17 6 1.8391 -9.7856 0.2409 18 1 -0.4851 0.8400 0.0004 19 1 0.6247 -2.5570 -0.8897 20 1 0.6241 -2.5567 0.8902 21 1 2.8719 -3.6043 0.8904 22 1 2.8720 -3.6042 -0.8895 23 1 0.8742 -4.9846 -0.7800 24 1 3.0640 -6.0348 0.8901 25 1 3.0627 -6.0349 -0.8899 26 1 1.0083 -7.4206 0.8925 27 1 1.0064 -7.4213 -0.8874 28 1 4.2348 -8.3886 1.3499 29 1 2.6047 -8.2701 2.1404 30 1 2.6840 -10.7213 2.0646 31 1 3.8151 -10.7092 0.6379 32 1 0.8947 -9.6534 0.7690 33 1 1.7413 -10.4058 -0.6500 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697872823.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:54 Heat of formation + Delta-G solvation = 1.155308 kcal Electronic energy + Delta-G solvation = -12206.548492 eV Core-core repulsion = 10073.823283 eV Total energy + Delta-G solvation = -2132.725209 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.90433 -37.64444 -35.18846 -32.91753 -30.54466 -27.40404 -26.72919 -25.27824 -22.75690 -22.31367 -20.76076 -18.53790 -17.25980 -16.97173 -16.57988 -16.40992 -15.81000 -15.06134 -14.90428 -14.27001 -14.04951 -13.50520 -13.40430 -13.06525 -12.85551 -12.45478 -12.36000 -12.15698 -11.99171 -11.73871 -11.46323 -11.40063 -11.20272 -10.58628 -9.88297 -9.37975 -8.21940 -6.33777 1.40159 1.40717 1.54257 2.39608 2.87819 3.11562 3.48453 3.62290 3.90237 3.94681 4.17822 4.40201 4.49586 4.51963 4.52962 4.57946 4.72846 4.77892 4.87055 4.90226 4.98783 5.02467 5.27319 5.34749 5.41811 5.63551 5.75325 6.03643 6.09727 6.22981 6.48111 6.83163 7.35734 8.90604 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.107747 B = 0.004838 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 259.806323 B = 5786.172713 C = 5932.945255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.031 3.969 10 C 0.084 3.916 11 N -0.697 5.697 12 C 0.070 3.930 13 C 0.032 3.968 14 N -0.494 5.494 15 C -0.011 4.011 16 C -0.133 4.133 17 C -0.005 4.005 18 H 0.265 0.735 19 H -0.007 1.007 20 H -0.004 1.004 21 H 0.057 0.943 22 H 0.018 0.982 23 H 0.340 0.660 24 H 0.064 0.936 25 H 0.027 0.973 26 H 0.049 0.951 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.058 -17.986 1.501 18.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.044 4.044 11 N -0.328 5.328 12 C -0.059 4.059 13 C -0.097 4.097 14 N -0.217 5.217 15 C -0.140 4.140 16 C -0.171 4.171 17 C -0.133 4.133 18 H 0.073 0.927 19 H 0.011 0.989 20 H 0.014 0.986 21 H 0.076 0.924 22 H 0.037 0.963 23 H 0.157 0.843 24 H 0.082 0.918 25 H 0.046 0.954 26 H 0.067 0.933 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.227 -17.764 1.569 18.584 hybrid contribution -0.200 1.170 -0.289 1.221 sum 5.028 -16.594 1.279 17.386 Atomic orbital electron populations 1.70106 1.07855 1.27838 1.51376 1.25990 0.95789 1.03435 0.94501 0.85342 0.78984 0.78471 0.77886 1.18605 1.20206 1.20224 1.21638 0.93550 0.92241 1.51051 0.92175 1.18934 0.94297 0.92246 0.95190 1.21780 0.95648 0.88286 0.98732 1.60480 1.20352 1.01889 1.50113 1.21757 0.94331 0.89577 1.00270 1.22490 0.94810 0.90697 1.01713 1.68914 1.21473 1.02077 1.29269 1.23859 1.01367 0.97495 0.91240 1.23081 0.98606 0.95045 1.00361 1.23845 0.97173 0.91812 1.00491 0.92657 0.98888 0.98595 0.92431 0.96346 0.84254 0.91765 0.95441 0.93293 0.90692 0.90055 0.91230 0.88958 0.88434 0.90786 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.56 13.28 21.45 0.28 -57.27 16 2 C 0.00 0.05 5.46 84.66 0.46 0.51 16 3 Si 0.97 44.75 29.54 68.60 2.03 46.78 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.55 -31.90 9.11 25.60 0.23 -31.67 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 9 C 0.03 1.69 5.23 29.85 0.16 1.85 16 10 C 0.08 3.73 5.62 86.30 0.49 4.21 16 11 N -0.70 -25.98 6.50 -513.86 -3.34 -29.32 16 12 C 0.07 2.16 5.79 86.31 0.50 2.66 16 13 C 0.03 0.82 5.08 86.31 0.44 1.26 16 14 N -0.49 -11.30 6.41 -928.09 -5.95 -17.25 16 15 C -0.01 -0.21 7.00 83.57 0.58 0.38 16 16 C -0.13 -1.92 8.47 30.94 0.26 -1.65 16 17 C 0.00 -0.08 7.70 83.57 0.64 0.57 16 18 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 19 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 20 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 21 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 22 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.34 12.20 8.73 -89.70 -0.78 11.41 16 24 H 0.06 1.99 7.67 -2.39 -0.02 1.97 16 25 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.05 1.26 7.56 -2.39 -0.02 1.25 16 27 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.07 1.37 7.70 -2.39 -0.02 1.35 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.20 7.77 -2.38 -0.02 1.18 16 33 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -64.76 273.44 -2.94 -67.70 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.28 Total: 11.26 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: 3.77 Total: -21.89 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -9.01 Total: -103.84 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -64.76 -2.94 -67.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697872823.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.851 kcal (2) G-P(sol) polarization free energy of solvation -64.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds